Wall clock time and date at job start Tue Mar 31 2020 23:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.33140 * 2 1 4 4 C 1.54481 * 110.37412 * 237.75156 * 2 1 3 5 5 C 1.54503 * 104.06445 * 217.08080 * 4 2 1 6 6 H 1.09004 * 110.51074 * 241.35380 * 5 4 2 7 7 C 1.50696 * 110.51420 * 118.77919 * 5 4 2 8 8 O 1.21282 * 119.99802 * 0.02562 * 7 5 4 9 9 N 1.34782 * 119.99899 * 179.97438 * 7 5 4 10 10 C 1.46918 * 120.63010 * 359.71929 * 9 7 5 11 11 C 1.52761 * 109.00939 * 233.58040 * 10 9 7 12 12 C 1.53033 * 109.38721 * 305.59432 * 11 10 9 13 13 O 1.42897 * 109.46170 * 181.26013 * 12 11 10 14 14 C 1.42902 * 114.00132 * 89.93237 * 13 12 11 15 15 C 1.53007 * 109.46854 * 180.02562 * 14 13 12 16 16 C 1.52996 * 109.46772 * 179.97438 * 15 14 13 17 17 N 1.46502 * 109.46999 * 179.97438 * 16 15 14 18 18 C 1.36936 * 119.99798 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00359 * 0.02562 * 18 17 16 20 20 C 1.38819 * 119.99862 * 179.97438 * 18 17 16 21 21 N 1.31622 * 119.99905 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 119.99860 * 0.02562 * 20 18 17 23 23 H 1.48509 * 109.46893 * 89.99590 * 22 20 18 24 24 H 1.48500 * 109.47177 * 209.99588 * 22 20 18 25 25 H 1.48503 * 109.47371 * 330.00107 * 22 20 18 26 26 C 1.53039 * 109.54152 * 61.23306 * 12 11 10 27 27 C 1.46927 * 120.62805 * 180.02562 * 9 7 5 28 28 C 1.54482 * 104.06349 * 359.97438 * 5 4 2 29 29 O 1.44428 * 110.46595 * 122.31356 * 2 1 3 30 30 H 1.09003 * 109.46683 * 180.70325 * 1 2 3 31 31 H 1.09002 * 109.47180 * 300.69767 * 1 2 3 32 32 H 1.08996 * 109.47407 * 60.70027 * 1 2 3 33 33 H 1.09007 * 110.50806 * 335.72406 * 4 2 1 34 34 H 1.08998 * 110.51350 * 98.28882 * 4 2 1 35 35 H 1.08992 * 109.59060 * 353.42484 * 10 9 7 36 36 H 1.09008 * 109.58407 * 113.84750 * 10 9 7 37 37 H 1.09002 * 109.56438 * 185.55418 * 11 10 9 38 38 H 1.08997 * 109.35657 * 65.50454 * 11 10 9 39 39 H 1.09004 * 109.45613 * 301.21829 * 12 11 10 40 40 H 1.08999 * 109.46519 * 299.99621 * 14 13 12 41 41 H 1.08998 * 109.47264 * 59.99941 * 14 13 12 42 42 H 1.09001 * 109.46847 * 299.99558 * 15 14 13 43 43 H 1.08998 * 109.47360 * 59.99845 * 15 14 13 44 44 H 1.09005 * 109.47381 * 300.00142 * 16 15 14 45 45 H 1.09001 * 109.47461 * 60.00084 * 16 15 14 46 46 H 0.96990 * 120.00035 * 0.02562 * 17 16 15 47 47 H 0.96998 * 119.99346 * 180.02562 * 21 20 18 48 48 H 1.09001 * 109.50136 * 178.68055 * 26 12 11 49 49 H 1.09010 * 109.49141 * 58.58711 * 26 12 11 50 50 H 1.08993 * 109.58662 * 246.15595 * 27 9 7 51 51 H 1.09000 * 109.58568 * 6.58530 * 27 9 7 52 52 H 1.09000 * 110.37168 * 142.80761 * 28 5 4 53 53 H 1.08998 * 110.37438 * 265.04419 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0679 -0.7727 -1.2248 5 6 3.3194 -1.5027 -0.6882 6 1 4.2116 -1.1727 -1.2206 7 6 3.1540 -2.9954 -0.8123 8 8 2.1360 -3.4554 -1.2845 9 7 4.1377 -3.8190 -0.3995 10 6 5.3796 -3.2764 0.1678 11 6 6.5699 -3.8581 -0.5927 12 6 6.4858 -5.3860 -0.5760 13 8 7.6141 -5.9325 -1.2618 14 6 8.7428 -6.1778 -0.4204 15 6 9.8854 -6.7584 -1.2563 16 6 11.0940 -7.0205 -0.3556 17 7 12.1878 -7.5769 -1.1558 18 6 13.3794 -7.8937 -0.5602 19 1 13.5128 -7.7338 0.4995 20 6 14.4157 -8.4214 -1.3183 21 7 15.5609 -8.7264 -0.7457 22 14 14.1847 -8.6987 -3.1511 23 1 14.5954 -7.4788 -3.8919 24 1 15.0193 -9.8470 -3.5871 25 1 12.7559 -8.9904 -3.4315 26 6 5.1992 -5.8356 -1.2721 27 6 3.9913 -5.2765 -0.5146 28 6 3.3902 -1.0841 0.7971 29 8 2.0350 -0.7233 1.1436 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3634 0.5246 0.8837 32 1 -0.3634 0.5029 -0.8961 33 1 1.3283 -1.4917 -1.5776 34 1 2.3388 -0.0821 -2.0233 35 1 5.3814 -2.1907 0.0717 36 1 5.4517 -3.5522 1.2199 37 1 7.4977 -3.5395 -0.1175 38 1 6.5482 -3.5038 -1.6233 39 1 6.4826 -5.7382 0.4556 40 1 9.0660 -5.2422 0.0359 41 1 8.4668 -6.8866 0.3603 42 1 9.5624 -7.6939 -1.7130 43 1 10.1613 -6.0493 -2.0368 44 1 11.4168 -6.0847 0.1008 45 1 10.8185 -7.7295 0.4251 46 1 12.0679 -7.7209 -2.1075 47 1 16.2850 -9.0948 -1.2756 48 1 5.1514 -6.9245 -1.2805 49 1 5.1904 -5.4626 -2.2964 50 1 3.9477 -5.7190 0.4805 51 1 3.0775 -5.5099 -1.0610 52 1 3.7288 -1.9188 1.4108 53 1 4.0557 -0.2296 0.9193 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276164380.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:40 Heat of formation + Delta-G solvation = -146.129045 kcal Electronic energy + Delta-G solvation = -29744.105680 eV Core-core repulsion = 25614.806791 eV Total energy + Delta-G solvation = -4129.298890 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.87122 -40.20709 -39.28699 -37.79422 -36.94722 -34.41018 -33.77682 -33.21205 -32.59765 -31.88764 -31.53302 -27.33088 -26.98591 -26.05249 -24.49489 -24.09661 -23.57054 -22.57616 -22.20967 -21.49267 -20.06600 -19.61784 -18.44571 -17.78056 -17.51169 -17.29743 -16.83560 -16.61392 -16.59965 -16.08584 -15.87218 -15.76688 -15.53245 -15.40389 -14.94358 -14.76851 -14.66737 -14.16053 -14.09821 -13.83599 -13.72818 -13.51125 -13.24006 -13.13855 -12.97287 -12.93876 -12.76827 -12.51447 -12.47030 -12.33535 -12.20466 -12.11677 -12.06334 -11.97908 -11.83979 -11.81610 -11.70180 -11.49516 -11.07723 -10.98682 -10.61172 -10.39005 -9.81237 -9.32388 -8.04519 -5.38687 1.38220 1.40974 1.47869 1.48623 1.85951 2.47489 2.57004 2.89709 3.27085 3.28237 3.45053 3.64763 3.70338 3.77014 3.88186 3.96961 4.00786 4.07561 4.08934 4.15291 4.25251 4.26183 4.31013 4.34733 4.40325 4.46457 4.52514 4.55367 4.59834 4.65794 4.70797 4.72609 4.75843 4.78596 4.80800 4.81832 4.85847 4.95312 4.96750 5.10151 5.16364 5.21367 5.26753 5.30048 5.31168 5.46259 5.73668 5.85791 6.19399 6.28110 6.32435 7.04660 7.05965 7.82154 8.00655 9.16738 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.030667 B = 0.001568 C = 0.001544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.820213 B =17857.733758 C =18133.345006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.067 3.933 3 H 0.092 0.908 4 C -0.144 4.144 5 C -0.145 4.145 6 H 0.140 0.860 7 C 0.520 3.480 8 O -0.581 6.581 9 N -0.611 5.611 10 C 0.105 3.895 11 C -0.154 4.154 12 C 0.085 3.915 13 O -0.400 6.400 14 C 0.075 3.925 15 C -0.118 4.118 16 C 0.157 3.843 17 N -0.762 5.762 18 C -0.240 4.240 19 H 0.059 0.941 20 C -0.062 4.062 21 N -0.982 5.982 22 Si 0.956 3.044 23 H -0.276 1.276 24 H -0.294 1.294 25 H -0.253 1.253 26 C -0.124 4.124 27 C 0.116 3.884 28 C 0.053 3.947 29 O -0.397 6.397 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.032 0.968 45 H 0.028 0.972 46 H 0.366 0.634 47 H 0.259 0.741 48 H 0.085 0.915 49 H 0.059 0.941 50 H 0.087 0.913 51 H 0.080 0.920 52 H 0.098 0.902 53 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.823 20.617 1.804 37.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.010 3.990 3 H 0.110 0.890 4 C -0.182 4.182 5 C -0.166 4.166 6 H 0.157 0.843 7 C 0.309 3.691 8 O -0.460 6.460 9 N -0.343 5.343 10 C -0.017 4.017 11 C -0.193 4.193 12 C 0.028 3.972 13 O -0.320 6.320 14 C -0.002 4.002 15 C -0.156 4.156 16 C 0.031 3.969 17 N -0.408 5.408 18 C -0.371 4.371 19 H 0.077 0.923 20 C -0.254 4.254 21 N -0.633 5.633 22 Si 0.783 3.217 23 H -0.203 1.203 24 H -0.221 1.221 25 H -0.178 1.178 26 C -0.163 4.163 27 C -0.006 4.006 28 C -0.024 4.024 29 O -0.317 6.317 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.122 0.878 35 H 0.130 0.870 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.050 0.950 45 H 0.046 0.954 46 H 0.199 0.801 47 H 0.068 0.932 48 H 0.103 0.897 49 H 0.077 0.923 50 H 0.105 0.895 51 H 0.098 0.902 52 H 0.116 0.884 53 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -32.342 20.267 1.758 38.208 hybrid contribution 0.641 -0.704 -1.040 1.410 sum -31.701 19.563 0.717 37.259 Atomic orbital electron populations 1.21824 0.93147 1.02133 1.03383 1.23198 0.95798 0.95957 0.84011 0.88980 1.23080 0.96376 0.99704 0.99077 1.22789 1.02684 0.90772 1.00346 0.84279 1.20884 0.82237 0.89943 0.76031 1.90653 1.30271 1.78264 1.46860 1.48231 1.17556 1.06680 1.61848 1.21979 0.81050 1.00455 0.98176 1.22341 0.99428 0.95425 1.02080 1.22188 0.85363 0.93245 0.96446 1.87901 1.23155 1.83981 1.36948 1.22360 0.85349 0.99944 0.92539 1.21532 0.93590 1.01534 0.98915 1.20658 0.86501 0.96319 0.93444 1.42738 1.12177 1.78107 1.07767 1.19072 0.89960 1.33991 0.94089 0.92295 1.25525 0.95519 1.01495 1.02872 1.69884 1.05022 1.51256 1.37094 0.85395 0.78321 0.77527 0.80463 1.20252 1.22063 1.17804 1.21903 0.92691 1.01974 0.99707 1.21552 0.98235 0.79364 1.01459 1.23679 0.85157 1.01765 0.91770 1.89161 1.27950 1.75179 1.39424 0.93674 0.91593 0.89364 0.90848 0.87780 0.86991 0.88803 0.88768 0.91588 0.90461 0.91624 0.92163 0.91807 0.91431 0.94973 0.95364 0.80105 0.93246 0.89654 0.92265 0.89512 0.90187 0.88423 0.87872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.52 71.98 0.69 -1.03 16 2 C 0.07 0.78 3.92 31.10 0.12 0.91 16 3 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 4 C -0.14 -1.74 6.21 31.61 0.20 -1.54 16 5 C -0.14 -1.54 2.54 -10.53 -0.03 -1.56 16 6 H 0.14 0.69 7.57 -2.38 -0.02 0.67 16 7 C 0.52 9.22 7.02 87.65 0.61 9.84 16 8 O -0.58 -15.45 14.69 -3.04 -0.04 -15.50 16 9 N -0.61 -8.37 2.96 -819.84 -2.42 -10.80 16 10 C 0.11 0.78 5.00 86.22 0.43 1.21 16 11 C -0.15 -1.71 5.68 30.53 0.17 -1.53 16 12 C 0.09 1.29 2.57 30.62 0.08 1.37 16 13 O -0.40 -8.75 9.99 -148.98 -1.49 -10.24 16 14 C 0.07 1.61 5.75 71.98 0.41 2.02 16 15 C -0.12 -3.35 5.70 30.60 0.17 -3.18 16 16 C 0.16 5.72 6.26 86.38 0.54 6.26 16 17 N -0.76 -35.86 5.41 -343.44 -1.86 -37.72 16 18 C -0.24 -13.82 10.47 84.04 0.88 -12.94 16 19 H 0.06 3.68 8.06 -2.91 -0.02 3.65 16 20 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 21 N -0.98 -63.03 13.97 21.65 0.30 -62.72 16 22 Si 0.96 45.61 27.74 68.60 1.90 47.51 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 25 H -0.25 -10.99 6.52 99.48 0.65 -10.34 16 26 C -0.12 -1.94 5.73 30.66 0.18 -1.76 16 27 C 0.12 1.72 6.43 86.35 0.56 2.27 16 28 C 0.05 0.48 6.00 72.49 0.44 0.91 16 29 O -0.40 -6.37 11.35 -148.98 -1.69 -8.06 16 30 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.09 0.68 8.14 -2.39 -0.02 0.67 16 33 H 0.07 1.35 6.23 -2.38 -0.01 1.33 16 34 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.11 0.33 5.15 -2.39 -0.01 0.32 16 36 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 37 H 0.09 0.88 7.84 -2.39 -0.02 0.86 16 38 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.08 0.96 7.79 -2.39 -0.02 0.95 16 40 H 0.07 1.21 7.84 -2.39 -0.02 1.19 16 41 H 0.06 1.18 8.08 -2.39 -0.02 1.16 16 42 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 45 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.37 16.48 5.53 -92.72 -0.51 15.96 16 47 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 48 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 50 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.08 1.50 7.00 -2.39 -0.02 1.49 16 52 H 0.10 0.81 6.53 -2.39 -0.02 0.79 16 53 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 Total: -1.00 -78.57 409.20 0.93 -77.64 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.31 Total: 21.88 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 5.92 Total: -1.99 kcal Atomic # 7 Polarization: -107.26 SS G_CDS: -3.98 Total: -111.24 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -3.22 Total: -33.81 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.90 Total: 47.51 kcal Total: -78.57 0.93 -77.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276164380.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.489 kcal (2) G-P(sol) polarization free energy of solvation -78.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds