Wall clock time and date at job start Tue Mar 31 2020 23:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.87184 * 2 1 4 4 C 1.54102 * 109.87903 * 238.98765 * 2 1 3 5 5 C 1.54812 * 104.18913 * 238.39387 * 4 2 1 6 6 H 1.09004 * 110.90280 * 97.31858 * 5 4 2 7 7 C 1.50694 * 110.91055 * 220.92395 * 5 4 2 8 8 O 1.21283 * 119.99853 * 17.54093 * 7 5 4 9 9 N 1.34773 * 120.00192 * 197.54319 * 7 5 4 10 10 C 1.46927 * 120.63000 * 4.57102 * 9 7 5 11 11 C 1.52760 * 109.00755 * 233.58510 * 10 9 7 12 12 C 1.53039 * 109.38519 * 305.58560 * 11 10 9 13 13 O 1.42893 * 109.45280 * 181.25578 * 12 11 10 14 14 C 1.42902 * 114.00035 * 89.93846 * 13 12 11 15 15 C 1.53008 * 109.46917 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.46931 * 179.97438 * 15 14 13 17 17 N 1.46501 * 109.47123 * 179.97438 * 16 15 14 18 18 C 1.36932 * 119.99689 * 180.02562 * 17 16 15 19 19 H 1.07995 * 120.00761 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99692 * 180.02562 * 18 17 16 21 21 N 1.31615 * 119.99946 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00078 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47289 * 89.99850 * 22 20 18 24 24 H 1.48500 * 109.47509 * 210.00353 * 22 20 18 25 25 H 1.48503 * 109.46895 * 330.00175 * 22 20 18 26 26 C 1.53036 * 109.53503 * 61.23787 * 12 11 10 27 27 C 1.46926 * 120.63196 * 184.85182 * 9 7 5 28 28 C 1.55001 * 102.09241 * 339.12355 * 5 4 2 29 29 O 1.43884 * 110.07045 * 120.94039 * 2 1 3 30 30 H 1.09001 * 109.46721 * 181.00631 * 1 2 3 31 31 H 1.08992 * 109.47460 * 301.00820 * 1 2 3 32 32 H 1.09000 * 109.46756 * 61.01397 * 1 2 3 33 33 H 1.08998 * 110.48475 * 119.72232 * 4 2 1 34 34 H 1.08995 * 110.49151 * 357.07497 * 4 2 1 35 35 H 1.09000 * 109.58604 * 353.41518 * 10 9 7 36 36 H 1.08992 * 109.58951 * 113.84234 * 10 9 7 37 37 H 1.08999 * 109.56732 * 185.54985 * 11 10 9 38 38 H 1.08998 * 109.36563 * 65.49753 * 11 10 9 39 39 H 1.09003 * 109.46126 * 301.22360 * 12 11 10 40 40 H 1.08999 * 109.47321 * 299.99924 * 14 13 12 41 41 H 1.08994 * 109.47243 * 60.00003 * 14 13 12 42 42 H 1.08999 * 109.46880 * 299.99970 * 15 14 13 43 43 H 1.08994 * 109.47344 * 59.99842 * 15 14 13 44 44 H 1.09005 * 109.47206 * 300.00099 * 16 15 14 45 45 H 1.09003 * 109.47074 * 59.99906 * 16 15 14 46 46 H 0.96996 * 119.99601 * 0.02562 * 17 16 15 47 47 H 0.97002 * 120.00089 * 180.02562 * 21 20 18 48 48 H 1.09006 * 109.49964 * 178.68531 * 26 12 11 49 49 H 1.08995 * 109.50047 * 58.59187 * 26 12 11 50 50 H 1.09008 * 109.58487 * 246.15335 * 27 9 7 51 51 H 1.08996 * 109.58739 * 6.57347 * 27 9 7 52 52 H 1.09002 * 110.61572 * 155.51843 * 28 5 4 53 53 H 1.08998 * 110.61585 * 278.36090 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0540 -0.7467 -1.2420 5 6 2.9228 -1.8883 -0.6601 6 1 2.3592 -2.8201 -0.6120 7 6 4.1853 -2.0664 -1.4633 8 8 4.5605 -1.1846 -2.2067 9 7 4.8974 -3.2055 -1.3558 10 6 4.4047 -4.3219 -0.5373 11 6 5.4886 -4.7227 0.4617 12 6 6.7879 -5.0199 -0.2905 13 8 7.7947 -5.4232 0.6398 14 6 7.8363 -6.8318 0.8769 15 6 8.9447 -7.1470 1.8835 16 6 8.9887 -8.6550 2.1379 17 7 10.0504 -8.9569 3.1012 18 6 10.2793 -10.2515 3.4844 19 1 9.6775 -11.0500 3.0763 20 6 11.2849 -10.5375 4.3976 21 7 11.5052 -11.7818 4.7656 22 14 12.3264 -9.1566 5.1031 23 1 11.6903 -8.6400 6.3416 24 1 13.6824 -9.6719 5.4208 25 1 12.4343 -8.0599 4.1076 26 6 7.2506 -3.7621 -1.0293 27 6 6.1841 -3.3524 -2.0497 28 6 3.2418 -1.3608 0.7621 29 8 2.0238 -0.6948 1.1592 30 1 -0.3633 -1.0275 0.0180 31 1 -0.3634 0.5294 0.8807 32 1 -0.3633 0.4980 -0.8990 33 1 2.6598 -0.0828 -1.8588 34 1 1.2249 -1.1548 -1.8199 35 1 3.5093 -4.0124 0.0018 36 1 4.1718 -5.1710 -1.1797 37 1 5.1721 -5.6121 1.0065 38 1 5.6535 -3.9051 1.1635 39 1 6.6161 -5.8208 -1.0096 40 1 6.8777 -7.1612 1.2777 41 1 8.0367 -7.3521 -0.0596 42 1 9.9035 -6.8175 1.4832 43 1 8.7439 -6.6267 2.8199 44 1 8.0298 -8.9841 2.5384 45 1 9.1894 -9.1757 1.2015 46 1 10.5912 -8.2398 3.4675 47 1 12.2077 -11.9817 5.4040 48 1 8.1883 -3.9677 -1.5458 49 1 7.3989 -2.9535 -0.3136 50 1 6.0992 -4.1210 -2.8181 51 1 6.4623 -2.4036 -2.5083 52 1 3.4648 -2.1873 1.4369 53 1 4.0726 -0.6559 0.7326 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276164382.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:48 Heat of formation + Delta-G solvation = -146.016642 kcal Electronic energy + Delta-G solvation = -29728.855819 eV Core-core repulsion = 25599.561804 eV Total energy + Delta-G solvation = -4129.294015 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.82221 -40.26854 -39.37522 -37.79775 -36.94145 -34.38860 -33.77101 -33.22172 -32.63265 -31.90741 -31.56316 -27.31491 -26.95233 -25.97128 -24.71470 -24.05779 -23.50585 -22.59305 -22.29376 -21.53087 -19.97289 -19.61480 -18.90615 -17.74124 -17.46070 -16.89635 -16.75936 -16.56804 -16.54235 -16.17253 -16.08249 -15.73672 -15.48679 -15.42814 -15.00151 -14.77133 -14.53305 -14.45195 -14.11987 -13.88765 -13.72557 -13.55209 -13.40572 -13.15067 -12.97689 -12.95570 -12.93477 -12.51158 -12.46760 -12.35827 -12.27345 -12.07253 -11.98101 -11.88117 -11.82574 -11.81511 -11.67189 -11.48627 -10.99013 -10.94306 -10.78812 -10.38941 -9.82168 -9.32327 -8.04463 -5.38619 1.38274 1.39265 1.41071 1.48619 1.82319 2.47499 2.57406 2.78396 3.27086 3.27927 3.51653 3.65243 3.66330 3.71610 3.85028 3.93690 3.99673 4.03483 4.09190 4.12523 4.13679 4.26102 4.27189 4.33959 4.39184 4.44235 4.51324 4.56081 4.59144 4.67433 4.71011 4.75302 4.77054 4.78944 4.81071 4.82139 4.91402 4.94930 4.97561 5.08702 5.11758 5.22215 5.28860 5.30409 5.31393 5.44788 5.73659 5.82511 6.19407 6.24943 6.33132 6.99872 7.05978 7.82226 8.00707 9.16744 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021159 B = 0.001655 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.020123 B =16914.022619 C =17507.213826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.066 3.934 3 H 0.065 0.935 4 C -0.137 4.137 5 C -0.142 4.142 6 H 0.135 0.865 7 C 0.525 3.475 8 O -0.577 6.577 9 N -0.608 5.608 10 C 0.106 3.894 11 C -0.156 4.156 12 C 0.085 3.915 13 O -0.400 6.400 14 C 0.075 3.925 15 C -0.118 4.118 16 C 0.157 3.843 17 N -0.762 5.762 18 C -0.240 4.240 19 H 0.059 0.941 20 C -0.063 4.063 21 N -0.982 5.982 22 Si 0.956 3.044 23 H -0.277 1.277 24 H -0.294 1.294 25 H -0.253 1.253 26 C -0.125 4.125 27 C 0.117 3.883 28 C 0.065 3.935 29 O -0.385 6.385 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.032 0.968 45 H 0.029 0.971 46 H 0.366 0.634 47 H 0.259 0.741 48 H 0.086 0.914 49 H 0.059 0.941 50 H 0.089 0.911 51 H 0.082 0.918 52 H 0.117 0.883 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.032 24.701 -16.101 38.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.009 3.991 3 H 0.083 0.917 4 C -0.175 4.175 5 C -0.163 4.163 6 H 0.153 0.847 7 C 0.314 3.686 8 O -0.457 6.457 9 N -0.340 5.340 10 C -0.016 4.016 11 C -0.194 4.194 12 C 0.028 3.972 13 O -0.320 6.320 14 C -0.002 4.002 15 C -0.156 4.156 16 C 0.031 3.969 17 N -0.408 5.408 18 C -0.371 4.371 19 H 0.077 0.923 20 C -0.255 4.255 21 N -0.632 5.632 22 Si 0.783 3.217 23 H -0.203 1.203 24 H -0.221 1.221 25 H -0.178 1.178 26 C -0.164 4.164 27 C -0.005 4.005 28 C -0.012 4.012 29 O -0.305 6.305 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.118 0.882 35 H 0.128 0.872 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.050 0.950 45 H 0.047 0.953 46 H 0.199 0.801 47 H 0.068 0.932 48 H 0.104 0.896 49 H 0.078 0.922 50 H 0.107 0.893 51 H 0.101 0.899 52 H 0.135 0.865 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.862 25.061 -16.218 38.216 hybrid contribution 1.175 0.125 0.458 1.267 sum -22.687 25.186 -15.760 37.382 Atomic orbital electron populations 1.21935 0.92019 1.03359 1.03178 1.22924 0.96424 0.95728 0.84057 0.91656 1.22992 0.99821 0.96495 0.98175 1.22944 0.94417 1.02912 0.96012 0.84726 1.20576 0.85387 0.80976 0.81636 1.90677 1.71478 1.42793 1.40724 1.48257 1.21421 1.15355 1.49001 1.21937 0.97348 0.89137 0.93178 1.22355 0.94968 1.03301 0.98797 1.22192 0.87621 0.96742 0.90677 1.87901 1.56337 1.23483 1.64252 1.22353 0.98355 0.81224 0.98232 1.21532 0.99393 0.94933 0.99723 1.20659 0.90734 0.93789 0.91751 1.42737 1.40711 1.04457 1.52875 1.19069 1.13515 0.85087 1.19435 0.92295 1.25527 1.00832 0.98607 1.00484 1.69880 1.35968 1.19396 1.37991 0.85395 0.77948 0.79425 0.78940 1.20279 1.22055 1.17783 1.21923 0.99200 0.97051 0.98206 1.21588 0.81640 1.03015 0.94302 1.23446 0.87662 0.97025 0.93111 1.88938 1.39595 1.67945 1.33991 0.91378 0.92102 0.89635 0.90380 0.88152 0.87209 0.88727 0.88944 0.91496 0.90432 0.91715 0.92114 0.91764 0.91481 0.95027 0.95328 0.80105 0.93248 0.89563 0.92194 0.89313 0.89923 0.86519 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.37 71.98 0.67 -0.59 16 2 C 0.07 0.82 4.05 30.97 0.13 0.95 16 3 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.14 -1.61 6.16 31.59 0.19 -1.42 16 5 C -0.14 -1.57 2.50 -10.24 -0.03 -1.59 16 6 H 0.13 0.79 6.58 -2.38 -0.02 0.77 16 7 C 0.53 8.45 6.94 87.66 0.61 9.06 16 8 O -0.58 -13.92 14.96 -3.04 -0.05 -13.97 16 9 N -0.61 -7.56 2.98 -819.76 -2.44 -10.00 16 10 C 0.11 0.75 6.26 86.22 0.54 1.29 16 11 C -0.16 -1.69 5.68 30.53 0.17 -1.52 16 12 C 0.09 1.24 2.57 30.62 0.08 1.32 16 13 O -0.40 -8.62 9.99 -148.98 -1.49 -10.11 16 14 C 0.08 1.61 5.75 71.98 0.41 2.02 16 15 C -0.12 -3.35 5.70 30.60 0.17 -3.18 16 16 C 0.16 5.72 6.26 86.38 0.54 6.26 16 17 N -0.76 -35.90 5.41 -343.45 -1.86 -37.75 16 18 C -0.24 -13.84 10.47 84.04 0.88 -12.96 16 19 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 20 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 21 N -0.98 -63.08 13.97 21.65 0.30 -62.78 16 22 Si 0.96 45.69 27.74 68.60 1.90 47.60 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 24 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 25 H -0.25 -10.99 6.52 99.48 0.65 -10.34 16 26 C -0.13 -1.82 5.73 30.67 0.18 -1.65 16 27 C 0.12 1.54 6.42 86.36 0.55 2.09 16 28 C 0.06 0.82 7.08 72.67 0.51 1.34 16 29 O -0.39 -6.15 11.21 -148.98 -1.67 -7.82 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 32 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.08 1.25 6.78 -2.39 -0.02 1.23 16 34 H 0.10 0.82 7.70 -2.39 -0.02 0.80 16 35 H 0.11 0.39 5.30 -2.39 -0.01 0.38 16 36 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.09 0.88 7.84 -2.39 -0.02 0.86 16 38 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.08 0.92 7.79 -2.39 -0.02 0.90 16 40 H 0.06 1.20 7.84 -2.39 -0.02 1.18 16 41 H 0.06 1.18 8.08 -2.39 -0.02 1.16 16 42 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 45 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.37 16.50 5.53 -92.71 -0.51 15.99 16 47 H 0.26 15.79 8.31 -92.71 -0.77 15.01 16 48 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 49 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 51 H 0.08 1.38 7.03 -2.39 -0.02 1.37 16 52 H 0.12 1.05 7.91 -2.39 -0.02 1.03 16 53 H 0.05 0.81 8.04 -2.39 -0.02 0.79 16 Total: -1.00 -75.92 412.04 1.10 -74.82 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.31 Total: 21.85 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 6.09 Total: -1.84 kcal Atomic # 7 Polarization: -106.54 SS G_CDS: -4.00 Total: -110.53 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -3.20 Total: -31.89 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.90 Total: 47.60 kcal Total: -75.92 1.10 -74.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276164382.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.201 kcal (2) G-P(sol) polarization free energy of solvation -75.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds