Wall clock time and date at job start Tue Mar 31 2020 23:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.99813 * 2 1 4 4 C 1.54333 * 109.98893 * 238.96278 * 2 1 3 5 5 C 1.55159 * 103.02338 * 218.66409 * 4 2 1 6 6 H 1.08997 * 111.00218 * 277.23553 * 5 4 2 7 7 N 1.46502 * 111.00391 * 153.38033 * 5 4 2 8 8 C 1.36933 * 119.99537 * 161.35503 * 7 5 4 9 9 H 1.07999 * 120.00296 * 359.97438 * 8 7 5 10 10 C 1.38820 * 119.99889 * 180.02562 * 8 7 5 11 11 N 1.31621 * 119.99792 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00233 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47351 * 89.99541 * 12 10 8 14 14 H 1.48499 * 109.47021 * 209.99928 * 12 10 8 15 15 H 1.48508 * 109.46723 * 329.99799 * 12 10 8 16 16 C 1.54912 * 101.57710 * 35.30746 * 5 4 2 17 17 N 1.47022 * 109.88554 * 121.09898 * 2 1 3 18 18 C 1.34777 * 125.64532 * 298.39436 * 17 2 1 19 19 O 1.21286 * 119.99912 * 359.71231 * 18 17 2 20 20 C 1.50693 * 119.99953 * 179.71865 * 18 17 2 21 21 C 1.53001 * 109.47139 * 179.97438 * 20 18 17 22 22 C 1.53000 * 109.47189 * 179.97438 * 21 20 18 23 23 O 1.42901 * 109.47512 * 179.97438 * 22 21 20 24 24 C 1.42889 * 114.00317 * 179.97438 * 23 22 21 25 25 C 1.53181 * 109.54623 * 209.99990 * 24 23 22 26 26 C 1.53090 * 109.16481 * 183.06288 * 25 24 23 27 27 O 1.42905 * 109.41466 * 57.61337 * 26 25 24 28 28 C 1.42905 * 114.09831 * 298.84306 * 27 26 25 29 29 C 1.53087 * 109.41504 * 61.15479 * 28 27 26 30 30 H 1.09006 * 109.46663 * 300.35931 * 1 2 3 31 31 H 1.09002 * 109.47209 * 60.35301 * 1 2 3 32 32 H 1.08992 * 109.47513 * 180.36094 * 1 2 3 33 33 H 1.09010 * 110.85058 * 100.19642 * 4 2 1 34 34 H 1.08997 * 110.51937 * 336.97731 * 4 2 1 35 35 H 0.96994 * 120.00044 * 341.35202 * 7 5 4 36 36 H 0.97001 * 120.00165 * 180.02562 * 11 10 8 37 37 H 1.09002 * 110.36304 * 204.15277 * 16 5 4 38 38 H 1.08997 * 110.36763 * 81.82961 * 16 5 4 39 39 H 1.08999 * 109.47552 * 59.99807 * 20 18 17 40 40 H 1.09009 * 109.47076 * 299.99447 * 20 18 17 41 41 H 1.09003 * 109.47374 * 59.99649 * 21 20 18 42 42 H 1.08996 * 109.47018 * 299.99788 * 21 20 18 43 43 H 1.08999 * 109.47074 * 60.00268 * 22 21 20 44 44 H 1.08996 * 109.47420 * 300.00096 * 22 21 20 45 45 H 1.08997 * 109.55096 * 330.18267 * 24 23 22 46 46 H 1.09007 * 109.52008 * 63.16379 * 25 24 23 47 47 H 1.08996 * 109.52389 * 302.97251 * 25 24 23 48 48 H 1.08998 * 109.48371 * 297.63244 * 26 25 24 49 49 H 1.09005 * 109.49161 * 177.59641 * 26 25 24 50 50 H 1.08994 * 109.48072 * 181.14100 * 28 27 26 51 51 H 1.09001 * 109.47741 * 301.17313 * 28 27 26 52 52 H 1.09001 * 109.52122 * 182.48887 * 29 28 27 53 53 H 1.08995 * 109.57446 * 62.33001 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0575 -0.7478 -1.2427 5 6 3.2863 -1.5184 -0.6916 6 1 4.1669 -0.8769 -0.6581 7 7 3.5474 -2.7243 -1.4815 8 6 4.7733 -3.3313 -1.4192 9 1 5.5477 -2.9209 -0.7882 10 6 5.0209 -4.4737 -2.1681 11 7 4.0773 -4.9735 -2.9375 12 14 6.6933 -5.3014 -2.0838 13 1 6.6901 -6.3145 -0.9981 14 1 6.9827 -5.9658 -3.3800 15 1 7.7368 -4.2818 -1.8062 16 6 2.8099 -1.8825 0.7367 17 7 2.0301 -0.7141 1.1838 18 6 1.8074 -0.3621 2.4656 19 8 1.1476 0.6238 2.7179 20 6 2.3785 -1.1934 3.5853 21 6 1.9816 -0.5799 4.9296 22 6 2.5609 -1.4243 6.0665 23 8 2.1907 -0.8510 7.3220 24 6 2.6834 -1.5674 8.4559 25 6 1.7141 -1.3981 9.6299 26 6 2.2876 -2.1046 10.8610 27 8 3.5764 -1.5651 11.1610 28 6 4.5379 -1.7365 10.1179 29 6 4.0549 -1.0153 8.8569 30 1 -0.3633 0.5194 0.8868 31 1 -0.3634 0.5083 -0.8931 32 1 -0.3634 -1.0275 0.0065 33 1 2.3596 -0.0449 -2.0193 34 1 1.3052 -1.4406 -1.6197 35 1 2.8520 -3.0927 -2.0485 36 1 4.2501 -5.7720 -3.4605 37 1 3.6656 -2.0412 1.3931 38 1 2.1801 -2.7718 0.7114 39 1 3.4652 -1.2160 3.5034 40 1 1.9879 -2.2090 3.5196 41 1 0.8949 -0.5569 5.0119 42 1 2.3724 0.4354 4.9952 43 1 3.6475 -1.4475 5.9845 44 1 2.1697 -2.4395 6.0008 45 1 2.7745 -2.6249 8.2079 46 1 0.7506 -1.8385 9.3731 47 1 1.5851 -0.3375 9.8457 48 1 2.3785 -3.1717 10.6584 49 1 1.6226 -1.9513 11.7110 50 1 5.4939 -1.3180 10.4324 51 1 4.6583 -2.7988 9.9055 52 1 4.7654 -1.1818 8.0473 53 1 3.9733 0.0532 9.0560 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278410943.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:21 Heat of formation + Delta-G solvation = -151.206950 kcal Electronic energy + Delta-G solvation = -29667.655675 eV Core-core repulsion = 25538.136591 eV Total energy + Delta-G solvation = -4129.519084 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.26365 -40.59340 -38.97402 -38.46962 -35.98572 -35.01191 -33.37322 -33.18342 -32.48362 -32.11709 -30.06120 -28.06462 -26.70305 -25.79667 -25.20294 -24.61402 -23.51148 -22.25394 -21.69301 -21.26246 -19.87338 -19.19449 -18.18227 -17.95657 -17.48480 -17.21581 -17.01788 -16.77324 -16.46218 -16.15308 -15.83835 -15.53729 -15.35634 -15.10823 -14.93233 -14.78001 -14.47552 -14.23983 -14.00493 -13.95810 -13.56466 -13.43859 -13.25690 -13.14178 -12.99995 -12.83966 -12.75670 -12.55032 -12.41213 -12.28839 -12.24731 -12.10287 -12.02748 -11.88993 -11.71982 -11.69867 -11.49295 -11.35130 -11.01403 -10.79810 -10.68009 -10.46599 -9.65708 -9.03744 -7.93097 -5.22917 1.51866 1.52570 1.60597 1.62454 1.94243 2.55286 2.60888 2.94340 3.38833 3.41120 3.73017 3.74386 3.80161 3.84858 3.93886 3.97718 4.00406 4.02779 4.10799 4.17092 4.24665 4.28110 4.33400 4.42601 4.44912 4.46990 4.50319 4.52329 4.57452 4.61285 4.69293 4.74032 4.74821 4.81351 4.82788 4.87006 5.03059 5.05766 5.08090 5.11502 5.12408 5.16229 5.22893 5.25944 5.39397 5.44114 5.56909 6.20697 6.25904 6.27785 6.57202 7.16034 7.35745 8.07226 8.31307 9.29701 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010107 B = 0.002094 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.582415 B =13367.324439 C =15699.313997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.136 3.864 3 H 0.073 0.927 4 C -0.124 4.124 5 C 0.164 3.836 6 H 0.063 0.937 7 N -0.723 5.723 8 C -0.240 4.240 9 H 0.081 0.919 10 C -0.071 4.071 11 N -0.967 5.967 12 Si 0.969 3.031 13 H -0.287 1.287 14 H -0.301 1.301 15 H -0.269 1.269 16 C 0.088 3.912 17 N -0.610 5.610 18 C 0.523 3.477 19 O -0.582 6.582 20 C -0.128 4.128 21 C -0.093 4.093 22 C 0.064 3.936 23 O -0.401 6.401 24 C 0.082 3.918 25 C -0.152 4.152 26 C 0.063 3.937 27 O -0.404 6.404 28 C 0.062 3.938 29 C -0.177 4.177 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.377 0.623 36 H 0.250 0.750 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.087 0.913 47 H 0.065 0.935 48 H 0.066 0.934 49 H 0.112 0.888 50 H 0.107 0.893 51 H 0.065 0.935 52 H 0.083 0.917 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.157 5.839 22.649 23.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.033 3.967 3 H 0.091 0.909 4 C -0.163 4.163 5 C 0.053 3.947 6 H 0.081 0.919 7 N -0.363 5.363 8 C -0.372 4.372 9 H 0.099 0.901 10 C -0.264 4.264 11 N -0.617 5.617 12 Si 0.798 3.202 13 H -0.214 1.214 14 H -0.228 1.228 15 H -0.194 1.194 16 C -0.038 4.038 17 N -0.344 5.344 18 C 0.314 3.686 19 O -0.463 6.463 20 C -0.167 4.167 21 C -0.131 4.131 22 C -0.012 4.012 23 O -0.321 6.321 24 C 0.025 3.975 25 C -0.190 4.190 26 C -0.014 4.014 27 O -0.323 6.323 28 C -0.015 4.015 29 C -0.215 4.215 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.209 0.791 36 H 0.059 0.941 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.105 0.895 47 H 0.084 0.916 48 H 0.084 0.916 49 H 0.130 0.870 50 H 0.125 0.875 51 H 0.084 0.916 52 H 0.102 0.898 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.385 6.599 23.064 24.227 hybrid contribution 0.521 -0.972 -0.941 1.450 sum -2.864 5.627 22.123 23.006 Atomic orbital electron populations 1.22042 0.94334 1.01958 1.02677 1.21551 0.94870 0.96018 0.84296 0.90882 1.22906 0.97590 0.99415 0.96375 1.21451 0.95840 0.87959 0.89432 0.91898 1.42434 1.13268 1.28807 1.51745 1.19611 0.91189 1.05616 1.20763 0.90110 1.25516 1.01068 0.99794 0.99985 1.69804 1.34319 1.24605 1.32958 0.85211 0.80162 0.78514 0.76278 1.21364 1.22784 1.19419 1.23148 0.94796 0.87308 0.98533 1.48708 1.52113 1.28531 1.05023 1.20788 0.79743 0.85105 0.83006 1.90654 1.42256 1.29471 1.83872 1.21533 1.03595 1.00253 0.91326 1.21079 1.01435 0.99365 0.91193 1.22568 0.99435 0.96532 0.82664 1.87909 1.76194 1.53850 1.14104 1.22255 0.93398 0.95787 0.86082 1.22301 0.99637 1.02604 0.94490 1.22713 0.84205 0.97060 0.97387 1.87920 1.21572 1.81185 1.41654 1.22675 0.92370 1.00082 0.86344 1.22709 0.97673 1.01627 0.99459 0.93048 0.89941 0.92923 0.89121 0.90664 0.79050 0.94070 0.90067 0.92094 0.86965 0.87181 0.92065 0.92076 0.91895 0.91755 0.90711 0.89476 0.91574 0.91550 0.87027 0.87522 0.91630 0.89829 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 9.11 71.98 0.66 -3.31 16 2 C 0.14 3.79 3.46 45.34 0.16 3.95 16 3 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 4 C -0.12 -3.61 6.11 31.79 0.19 -3.41 16 5 C 0.16 5.67 3.69 46.38 0.17 5.84 16 6 H 0.06 2.22 8.13 -2.39 -0.02 2.20 16 7 N -0.72 -32.59 5.28 -316.36 -1.67 -34.26 16 8 C -0.24 -12.07 9.98 84.04 0.84 -11.23 16 9 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 10 C -0.07 -3.79 5.50 84.86 0.47 -3.33 16 11 N -0.97 -55.73 13.06 21.65 0.28 -55.45 16 12 Si 0.97 43.19 29.55 68.60 2.03 45.22 16 13 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 14 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 15 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 16 C 0.09 2.67 6.38 86.86 0.55 3.22 16 17 N -0.61 -17.61 3.06 -788.06 -2.41 -20.03 16 18 C 0.52 15.21 7.64 87.65 0.67 15.88 16 19 O -0.58 -20.56 15.03 -3.05 -0.05 -20.61 16 20 C -0.13 -2.71 4.71 29.85 0.14 -2.57 16 21 C -0.09 -2.02 4.87 30.59 0.15 -1.87 16 22 C 0.06 1.13 5.76 71.98 0.41 1.54 16 23 O -0.40 -8.35 10.00 -148.98 -1.49 -9.84 16 24 C 0.08 1.29 2.69 30.72 0.08 1.37 16 25 C -0.15 -2.17 5.79 30.68 0.18 -2.00 16 26 C 0.06 0.74 6.84 72.01 0.49 1.23 16 27 O -0.40 -6.56 10.77 -148.98 -1.60 -8.16 16 28 C 0.06 0.76 6.84 72.01 0.49 1.26 16 29 C -0.18 -2.55 5.77 30.69 0.18 -2.37 16 30 H 0.05 1.50 6.89 -2.38 -0.02 1.49 16 31 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.09 2.41 8.14 -2.38 -0.02 2.40 16 34 H 0.07 2.25 7.70 -2.39 -0.02 2.23 16 35 H 0.38 18.48 7.71 -92.71 -0.71 17.76 16 36 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 37 H 0.08 2.27 7.48 -2.39 -0.02 2.25 16 38 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.11 2.02 7.85 -2.39 -0.02 2.00 16 40 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 41 H 0.06 1.53 8.10 -2.39 -0.02 1.51 16 42 H 0.06 1.53 8.10 -2.39 -0.02 1.51 16 43 H 0.06 0.94 8.00 -2.39 -0.02 0.92 16 44 H 0.06 0.95 8.09 -2.39 -0.02 0.93 16 45 H 0.07 0.96 7.79 -2.39 -0.02 0.94 16 46 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 47 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 49 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 50 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 52 H 0.08 1.06 8.00 -2.39 -0.02 1.04 16 53 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -65.49 419.01 1.08 -64.41 By element: Atomic # 1 Polarization: 34.37 SS G_CDS: 0.15 Total: 34.52 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 5.83 Total: 4.19 kcal Atomic # 7 Polarization: -105.94 SS G_CDS: -3.80 Total: -109.74 kcal Atomic # 8 Polarization: -35.46 SS G_CDS: -3.14 Total: -38.60 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -65.49 1.08 -64.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278410943.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.796 kcal (2) G-P(sol) polarization free energy of solvation -65.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds