Wall clock time and date at job start Wed Apr 1 2020 00:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.86963 * 2 1 4 4 C 1.54319 * 109.88703 * 121.02068 * 2 1 3 5 5 H 1.09006 * 110.71721 * 23.06905 * 4 2 1 6 6 N 1.46498 * 110.71850 * 259.97420 * 4 2 1 7 7 C 1.36943 * 119.99727 * 157.44028 * 6 4 2 8 8 H 1.07998 * 120.00392 * 359.97438 * 7 6 4 9 9 C 1.38811 * 119.99586 * 179.97438 * 7 6 4 10 10 N 1.31618 * 120.00460 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99694 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47297 * 179.97438 * 11 9 7 13 13 H 1.48503 * 109.47261 * 60.00129 * 11 9 7 14 14 H 1.48500 * 109.47454 * 300.00122 * 11 9 7 15 15 C 1.55151 * 103.10409 * 141.51915 * 4 2 1 16 16 C 1.55124 * 101.48586 * 324.72049 * 15 4 2 17 17 N 1.47029 * 109.87913 * 238.83274 * 2 1 3 18 18 C 1.34773 * 125.65353 * 61.60263 * 17 2 1 19 19 O 1.21280 * 119.99946 * 0.02562 * 18 17 2 20 20 C 1.50692 * 120.00033 * 180.02562 * 18 17 2 21 21 C 1.53001 * 109.47211 * 179.97438 * 20 18 17 22 22 C 1.52997 * 109.47438 * 179.97438 * 21 20 18 23 23 O 1.42903 * 109.47190 * 180.02562 * 22 21 20 24 24 C 1.42897 * 113.99863 * 180.02562 * 23 22 21 25 25 C 1.53185 * 109.54145 * 269.81892 * 24 23 22 26 26 C 1.53103 * 109.15508 * 183.24406 * 25 24 23 27 27 O 1.42898 * 109.48936 * 57.47373 * 26 25 24 28 28 C 1.42902 * 114.09609 * 298.88732 * 27 26 25 29 29 C 1.53092 * 109.41648 * 61.16137 * 28 27 26 30 30 H 1.08996 * 109.46781 * 298.97906 * 1 2 3 31 31 H 1.08995 * 109.47239 * 58.97666 * 1 2 3 32 32 H 1.09001 * 109.46919 * 178.98000 * 1 2 3 33 33 H 0.96998 * 120.00095 * 337.43487 * 6 4 2 34 34 H 0.97001 * 119.99952 * 359.97438 * 10 9 7 35 35 H 1.09006 * 111.00487 * 82.66416 * 15 4 2 36 36 H 1.09005 * 111.00867 * 206.51378 * 15 4 2 37 37 H 1.09003 * 110.20644 * 277.95185 * 16 15 4 38 38 H 1.09006 * 110.51051 * 155.75478 * 16 15 4 39 39 H 1.08999 * 109.47355 * 299.99590 * 20 18 17 40 40 H 1.09001 * 109.47841 * 59.99972 * 20 18 17 41 41 H 1.09003 * 109.47381 * 300.00277 * 21 20 18 42 42 H 1.09007 * 109.46953 * 59.99687 * 21 20 18 43 43 H 1.08999 * 109.47347 * 299.99802 * 22 21 20 44 44 H 1.08999 * 109.46934 * 59.99770 * 22 21 20 45 45 H 1.08997 * 109.54753 * 29.99325 * 24 23 22 46 46 H 1.08995 * 109.52158 * 303.05823 * 25 24 23 47 47 H 1.08998 * 109.52065 * 63.25200 * 25 24 23 48 48 H 1.09005 * 109.40894 * 297.49066 * 26 25 24 49 49 H 1.09000 * 109.49011 * 177.51015 * 26 25 24 50 50 H 1.08994 * 109.48563 * 301.17396 * 28 27 26 51 51 H 1.09011 * 109.48691 * 181.14655 * 28 27 26 52 52 H 1.08998 * 109.51997 * 182.48188 * 29 28 27 53 53 H 1.09003 * 109.57341 * 62.32349 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0550 -0.7479 1.2436 5 1 1.3041 -1.4415 1.6219 6 7 2.4556 0.1991 2.2871 7 6 2.5065 -0.2042 3.5948 8 1 2.2510 -1.2202 3.8569 9 6 2.8867 0.6930 4.5835 10 7 3.1976 1.9314 4.2642 11 14 2.9555 0.1430 6.3673 12 1 3.3872 1.2800 7.2196 13 1 3.9250 -0.9735 6.5041 14 1 1.6096 -0.3148 6.7965 15 6 3.2870 -1.5168 0.6977 16 6 2.8145 -1.8803 -0.7344 17 7 2.0300 -0.7156 -1.1831 18 6 1.8073 -0.3653 -2.4653 19 8 1.1435 0.6175 -2.7189 20 6 2.3832 -1.1948 -3.5839 21 6 1.9841 -0.5845 -4.9290 22 6 2.5692 -1.4263 -6.0647 23 8 2.1970 -0.8559 -7.3210 24 6 2.6949 -1.5703 -8.4540 25 6 4.0660 -1.0130 -8.8490 26 6 4.5545 -1.7289 -10.1111 27 8 3.5951 -1.5602 -11.1566 28 6 2.3079 -2.1059 -10.8608 29 6 1.7280 -1.4037 -9.6302 30 1 -0.3633 0.4979 0.8990 31 1 -0.3633 0.5296 -0.8806 32 1 -0.3633 -1.0275 -0.0183 33 1 2.6849 1.1118 2.0518 34 1 3.1616 2.2171 3.3379 35 1 4.1665 -0.8735 0.6661 36 1 3.4812 -2.4128 1.2873 37 1 2.1887 -2.7724 -0.7093 38 1 3.6706 -2.0368 -1.3909 39 1 3.4698 -1.2126 -3.5008 40 1 1.9970 -2.2120 -3.5180 41 1 0.8974 -0.5669 -5.0119 42 1 2.3700 0.4328 -4.9952 43 1 3.6559 -1.4434 -5.9816 44 1 2.1838 -2.4437 -5.9986 45 1 2.7887 -2.6276 -8.2060 46 1 3.9815 0.0554 -9.0474 47 1 4.7742 -1.1789 -8.0373 48 1 4.6790 -2.7910 -9.8999 49 1 5.5096 -1.3059 -10.4225 50 1 2.4029 -3.1728 -10.6594 51 1 1.6443 -1.9544 -11.7122 52 1 0.7657 -1.8486 -9.3767 53 1 1.5939 -0.3433 -9.8442 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283921024.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:17 Heat of formation + Delta-G solvation = -151.791347 kcal Electronic energy + Delta-G solvation = -29549.787314 eV Core-core repulsion = 25420.242889 eV Total energy + Delta-G solvation = -4129.544425 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.34430 -40.59374 -39.08451 -38.49325 -36.25222 -35.02883 -33.52196 -32.96429 -32.27838 -32.11686 -30.69016 -27.96868 -26.68971 -25.27991 -24.93780 -24.61838 -23.91409 -22.65603 -21.69181 -21.26756 -20.06340 -19.35956 -18.21609 -17.93523 -17.49591 -17.19961 -17.01011 -16.82380 -16.60670 -16.16305 -15.87112 -15.77650 -15.45810 -15.09316 -15.03424 -14.78514 -14.56668 -14.28184 -13.97403 -13.91563 -13.68763 -13.44790 -13.25809 -13.07512 -13.02950 -12.73525 -12.69620 -12.53916 -12.41912 -12.36374 -12.25388 -12.15012 -11.89544 -11.87440 -11.71938 -11.68915 -11.34801 -11.28772 -10.95034 -10.83119 -10.67827 -10.45629 -9.71995 -9.14770 -8.39107 -5.34870 1.59819 1.60110 1.69987 1.84842 1.86461 2.58498 2.72823 2.94929 3.35458 3.45190 3.63125 3.69263 3.73577 3.76263 3.89977 3.94876 3.98760 4.02269 4.06828 4.11699 4.24654 4.26350 4.31040 4.32439 4.40357 4.43933 4.48155 4.50410 4.55991 4.58190 4.59021 4.67959 4.74236 4.74984 4.81740 4.85845 4.94996 5.03337 5.06261 5.11107 5.12813 5.16028 5.16996 5.24105 5.29830 5.38722 5.61082 6.21549 6.28369 6.46700 6.55163 7.04882 7.13061 7.94085 8.07950 9.12005 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.033236 B = 0.001551 C = 0.001528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.259801 B =18051.970868 C =18321.633826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.131 3.869 3 H 0.039 0.961 4 C 0.174 3.826 5 H 0.068 0.932 6 N -0.742 5.742 7 C -0.327 4.327 8 H 0.075 0.925 9 C -0.105 4.105 10 N -0.977 5.977 11 Si 1.129 2.871 12 H -0.298 1.298 13 H -0.274 1.274 14 H -0.277 1.277 15 C -0.148 4.148 16 C 0.106 3.894 17 N -0.611 5.611 18 C 0.518 3.482 19 O -0.589 6.589 20 C -0.119 4.119 21 C -0.099 4.099 22 C 0.066 3.934 23 O -0.406 6.406 24 C 0.084 3.916 25 C -0.178 4.178 26 C 0.062 3.938 27 O -0.406 6.406 28 C 0.063 3.937 29 C -0.154 4.154 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.356 0.644 34 H 0.241 0.759 35 H 0.053 0.947 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.120 0.880 40 H 0.128 0.872 41 H 0.058 0.942 42 H 0.051 0.949 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.081 0.919 46 H 0.060 0.940 47 H 0.086 0.914 48 H 0.069 0.931 49 H 0.105 0.895 50 H 0.070 0.930 51 H 0.109 0.891 52 H 0.087 0.913 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.298 -17.278 -28.688 33.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.026 3.974 3 H 0.057 0.943 4 C 0.064 3.936 5 H 0.086 0.914 6 N -0.383 5.383 7 C -0.459 4.459 8 H 0.093 0.907 9 C -0.296 4.296 10 N -0.625 5.625 11 Si 0.953 3.047 12 H -0.224 1.224 13 H -0.200 1.200 14 H -0.204 1.204 15 C -0.189 4.189 16 C -0.015 4.015 17 N -0.345 5.345 18 C 0.309 3.691 19 O -0.470 6.470 20 C -0.158 4.158 21 C -0.137 4.137 22 C -0.010 4.010 23 O -0.326 6.326 24 C 0.027 3.973 25 C -0.216 4.216 26 C -0.015 4.015 27 O -0.325 6.325 28 C -0.013 4.013 29 C -0.192 4.192 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.188 0.812 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.126 0.874 39 H 0.138 0.862 40 H 0.146 0.854 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.099 0.901 46 H 0.079 0.921 47 H 0.105 0.895 48 H 0.087 0.913 49 H 0.123 0.877 50 H 0.088 0.912 51 H 0.127 0.873 52 H 0.106 0.894 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.131 -16.249 -27.469 31.935 hybrid contribution -0.312 0.516 -0.969 1.141 sum 0.820 -15.733 -28.438 32.510 Atomic orbital electron populations 1.21922 0.94408 1.02439 1.01385 1.21587 0.94799 0.95240 0.85791 0.94316 1.21390 0.95152 0.90857 0.86181 0.91398 1.42551 1.81865 1.10209 1.03677 1.20379 1.41933 0.98056 0.85491 0.90696 1.27222 0.99800 0.94128 1.08459 1.71002 1.54154 1.18442 1.18902 0.82619 0.77055 0.74641 0.70353 1.22431 1.19956 1.20355 1.23401 0.98615 1.01146 0.95739 1.22588 0.96092 0.87872 0.94996 1.48679 1.52328 1.29095 1.04405 1.21147 0.79820 0.85193 0.82961 1.90685 1.42385 1.30098 1.83837 1.21532 1.03773 1.00485 0.90022 1.21129 1.01377 0.99316 0.91898 1.22578 0.99488 0.96664 0.82298 1.87930 1.75928 1.54385 1.14342 1.22245 0.93124 0.95974 0.85970 1.22726 0.97835 1.01456 0.99565 1.22681 0.92290 1.00262 0.86237 1.87924 1.21850 1.81040 1.41705 1.22708 0.84160 0.97119 0.97330 1.22311 0.99776 1.02442 0.94678 0.92819 0.92949 0.91070 0.81178 0.94815 0.92841 0.89286 0.88578 0.87441 0.86167 0.85419 0.92329 0.92988 0.91624 0.90968 0.90138 0.92131 0.89539 0.91291 0.87687 0.91221 0.87250 0.89407 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.89 9.09 71.98 0.65 -4.24 16 2 C 0.13 4.65 3.21 45.34 0.15 4.80 16 3 H 0.04 1.64 7.70 -2.39 -0.02 1.62 16 4 C 0.17 6.53 3.12 46.18 0.14 6.67 16 5 H 0.07 2.54 7.81 -2.38 -0.02 2.52 16 6 N -0.74 -36.56 5.24 -317.34 -1.66 -38.22 16 7 C -0.33 -17.74 9.97 84.03 0.84 -16.91 16 8 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 9 C -0.11 -6.01 5.50 84.86 0.47 -5.54 16 10 N -0.98 -61.34 13.70 21.65 0.30 -61.04 16 11 Si 1.13 50.83 29.92 68.60 2.05 52.88 16 12 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 13 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 14 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 15 C -0.15 -4.40 6.79 32.06 0.22 -4.19 16 16 C 0.11 2.17 6.70 86.93 0.58 2.75 16 17 N -0.61 -17.08 3.07 -787.62 -2.42 -19.49 16 18 C 0.52 14.49 7.64 87.66 0.67 15.16 16 19 O -0.59 -22.20 15.03 -3.03 -0.05 -22.25 16 20 C -0.12 -1.92 4.70 29.85 0.14 -1.78 16 21 C -0.10 -1.92 4.87 30.59 0.15 -1.77 16 22 C 0.07 0.91 5.75 71.98 0.41 1.32 16 23 O -0.41 -7.61 10.00 -148.98 -1.49 -9.10 16 24 C 0.08 1.11 2.69 30.72 0.08 1.19 16 25 C -0.18 -2.20 5.77 30.69 0.18 -2.03 16 26 C 0.06 0.64 6.84 72.02 0.49 1.13 16 27 O -0.41 -5.97 10.77 -148.98 -1.60 -7.58 16 28 C 0.06 0.63 6.84 72.01 0.49 1.13 16 29 C -0.15 -1.95 5.79 30.68 0.18 -1.77 16 30 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.05 1.88 6.90 -2.39 -0.02 1.87 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.36 19.05 6.37 -92.71 -0.59 18.46 16 34 H 0.24 15.28 6.77 -92.71 -0.63 14.65 16 35 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 37 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.11 1.48 7.47 -2.38 -0.02 1.46 16 39 H 0.12 1.37 7.85 -2.39 -0.02 1.35 16 40 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.06 1.36 8.10 -2.39 -0.02 1.34 16 42 H 0.05 1.28 8.10 -2.38 -0.02 1.26 16 43 H 0.07 0.69 7.97 -2.39 -0.02 0.67 16 44 H 0.07 0.68 8.09 -2.39 -0.02 0.66 16 45 H 0.08 0.74 7.79 -2.39 -0.02 0.72 16 46 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.09 0.86 7.97 -2.39 -0.02 0.84 16 48 H 0.07 0.46 8.14 -2.38 -0.02 0.45 16 49 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 51 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 52 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 53 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -77.28 416.89 1.40 -75.88 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: 0.42 Total: 32.98 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 5.84 Total: -4.06 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -3.78 Total: -118.76 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -3.14 Total: -38.92 kcal Atomic # 14 Polarization: 50.83 SS G_CDS: 2.05 Total: 52.88 kcal Total: -77.28 1.40 -75.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283921024.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.913 kcal (2) G-P(sol) polarization free energy of solvation -77.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds