Wall clock time and date at job start Wed Apr 1 2020 00:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.87473 * 2 1 4 4 C 1.54328 * 109.88494 * 238.82703 * 2 1 3 5 5 H 1.09007 * 110.71513 * 336.75055 * 4 2 1 6 6 N 1.46493 * 110.72152 * 100.02131 * 4 2 1 7 7 C 1.36944 * 120.00165 * 205.00005 * 6 4 2 8 8 H 1.07999 * 119.99729 * 0.02562 * 7 6 4 9 9 C 1.38813 * 119.99963 * 179.97438 * 7 6 4 10 10 N 1.31621 * 120.00127 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99750 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46789 * 60.00700 * 11 9 7 13 13 H 1.48492 * 109.47081 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47192 * 300.00660 * 11 9 7 15 15 C 1.55155 * 102.94193 * 218.39140 * 4 2 1 16 16 C 1.54906 * 101.58328 * 35.49714 * 15 4 2 17 17 N 1.47019 * 109.88752 * 121.01638 * 2 1 3 18 18 C 1.34780 * 125.64589 * 298.39914 * 17 2 1 19 19 O 1.21275 * 120.00143 * 359.97438 * 18 17 2 20 20 C 1.50700 * 119.99836 * 179.97438 * 18 17 2 21 21 C 1.52998 * 109.47147 * 179.97438 * 20 18 17 22 22 C 1.52998 * 109.47548 * 180.02562 * 21 20 18 23 23 O 1.42898 * 109.47299 * 180.02562 * 22 21 20 24 24 C 1.42909 * 113.99753 * 179.97438 * 23 22 21 25 25 C 1.53172 * 109.54104 * 269.81770 * 24 23 22 26 26 C 1.53102 * 109.15533 * 183.24180 * 25 24 23 27 27 O 1.42903 * 109.48606 * 57.47718 * 26 25 24 28 28 C 1.42901 * 114.09594 * 298.88421 * 27 26 25 29 29 C 1.53095 * 109.41342 * 61.16148 * 28 27 26 30 30 H 1.09002 * 109.47153 * 300.43629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 180.43820 * 1 2 3 32 32 H 1.09004 * 109.47261 * 60.43801 * 1 2 3 33 33 H 0.97001 * 120.00414 * 25.00826 * 6 4 2 34 34 H 0.96996 * 119.99504 * 179.97438 * 10 9 7 35 35 H 1.09003 * 110.99799 * 277.42087 * 15 4 2 36 36 H 1.08999 * 111.03442 * 153.58709 * 15 4 2 37 37 H 1.09001 * 110.36496 * 204.15090 * 16 15 4 38 38 H 1.08995 * 110.45868 * 81.88076 * 16 15 4 39 39 H 1.09001 * 109.47016 * 299.99445 * 20 18 17 40 40 H 1.09000 * 109.47482 * 59.99951 * 20 18 17 41 41 H 1.09000 * 109.46916 * 300.00343 * 21 20 18 42 42 H 1.09004 * 109.47194 * 59.99734 * 21 20 18 43 43 H 1.09005 * 109.46591 * 300.00333 * 22 21 20 44 44 H 1.08996 * 109.46804 * 59.99593 * 22 21 20 45 45 H 1.08995 * 109.53893 * 29.99807 * 24 23 22 46 46 H 1.09003 * 109.52629 * 303.06087 * 25 24 23 47 47 H 1.09006 * 109.52428 * 63.25018 * 25 24 23 48 48 H 1.09003 * 109.40702 * 297.49395 * 26 25 24 49 49 H 1.09004 * 109.49435 * 177.51148 * 26 25 24 50 50 H 1.08998 * 109.48719 * 301.17655 * 28 27 26 51 51 H 1.08999 * 109.49053 * 181.14415 * 28 27 26 52 52 H 1.08996 * 109.52221 * 182.48219 * 29 28 27 53 53 H 1.09000 * 109.57237 * 62.32543 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0252 0.0000 4 6 2.0549 -0.7512 -1.2417 5 1 1.3051 -1.4482 -1.6163 6 7 2.4554 0.1929 -2.2878 7 6 2.4582 -0.1995 -3.5998 8 1 2.1647 -1.2049 -3.8633 9 6 2.8372 0.6953 -4.5910 10 7 3.1944 1.9208 -4.2699 11 14 2.8417 0.1598 -6.3807 12 1 1.4718 -0.2550 -6.7766 13 1 3.2829 1.2915 -7.2349 14 1 3.7742 -0.9829 -6.5531 15 6 3.2876 -1.5152 -0.6903 16 6 2.8145 -1.8783 0.7394 17 7 2.0301 -0.7124 1.1848 18 6 1.8074 -0.3586 2.4662 19 8 1.1436 0.6248 2.7171 20 6 2.3834 -1.1850 3.5870 21 6 1.9854 -0.5705 4.9304 22 6 2.5707 -1.4091 6.0684 23 8 2.1985 -0.8353 7.3231 24 6 2.6966 -1.5467 8.4581 25 6 1.6787 -2.6091 8.8840 26 6 2.1837 -3.3106 10.1477 27 8 2.3981 -2.3426 11.1768 28 6 3.3759 -1.3524 10.8519 29 6 2.9178 -0.5707 9.6177 30 1 -0.3633 0.5206 0.8861 31 1 -0.3633 -1.0277 0.0079 32 1 -0.3634 0.5070 -0.8939 33 1 2.7188 1.0960 -2.0512 34 1 3.4596 2.5458 -4.9626 35 1 4.1654 -0.8697 -0.6593 36 1 3.4858 -2.4128 -1.2761 37 1 3.6717 -2.0318 1.3950 38 1 2.1892 -2.7708 0.7185 39 1 1.9972 -2.2024 3.5239 40 1 3.4701 -1.2031 3.5039 41 1 2.3719 0.4468 4.9933 42 1 0.8988 -0.5520 5.0139 43 1 2.1846 -2.4265 6.0056 44 1 3.6573 -1.4270 5.9847 45 1 3.6402 -2.0279 8.2013 46 1 0.7203 -2.1331 9.0914 47 1 1.5581 -3.3395 8.0839 48 1 3.1211 -3.8216 9.9283 49 1 1.4428 -4.0374 10.4810 50 1 4.3289 -1.8377 10.6416 51 1 3.4939 -0.6683 11.6922 52 1 3.6825 0.1553 9.3420 53 1 1.9856 -0.0514 9.8397 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283921025.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:21 Heat of formation + Delta-G solvation = -151.237173 kcal Electronic energy + Delta-G solvation = -29500.642863 eV Core-core repulsion = 25371.122468 eV Total energy + Delta-G solvation = -4129.520395 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.26713 -40.57543 -38.99485 -38.45677 -35.90424 -34.98906 -33.47006 -32.95974 -32.19866 -32.10105 -30.83463 -27.94650 -26.84284 -25.26229 -24.81898 -24.58727 -23.83549 -22.58610 -21.56751 -21.23935 -19.97593 -19.13277 -18.16718 -17.92374 -17.46870 -17.12617 -16.89709 -16.84362 -16.53241 -16.03180 -15.79905 -15.63042 -15.42706 -15.10538 -14.90508 -14.70506 -14.50978 -14.29909 -13.93422 -13.80111 -13.53448 -13.31276 -13.21309 -13.12736 -12.97200 -12.88813 -12.62363 -12.55799 -12.48735 -12.36990 -12.23445 -12.18898 -12.09714 -11.86999 -11.71726 -11.68080 -11.52875 -11.33169 -10.92882 -10.78675 -10.66207 -10.43507 -9.63949 -9.02556 -7.93914 -5.24064 1.49439 1.52265 1.58223 1.66358 1.92989 2.56725 2.62580 2.96366 3.36900 3.51443 3.75071 3.76067 3.78662 3.82003 3.96355 3.99624 4.02936 4.05353 4.14255 4.19513 4.26133 4.33239 4.38138 4.43270 4.45493 4.50720 4.52312 4.55145 4.59170 4.62661 4.67214 4.70788 4.76376 4.80847 4.83623 4.94595 5.04851 5.05293 5.09168 5.13423 5.19127 5.21752 5.25875 5.28137 5.37704 5.48246 5.54822 6.22810 6.26094 6.30502 6.62725 7.19627 7.32475 8.05003 8.28569 9.29340 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.036032 B = 0.001531 C = 0.001522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.897343 B =18288.329648 C =18389.271432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.130 3.870 3 H 0.039 0.961 4 C 0.170 3.830 5 H 0.072 0.928 6 N -0.729 5.729 7 C -0.240 4.240 8 H 0.084 0.916 9 C -0.075 4.075 10 N -0.971 5.971 11 Si 0.974 3.026 12 H -0.278 1.278 13 H -0.301 1.301 14 H -0.274 1.274 15 C -0.150 4.150 16 C 0.106 3.894 17 N -0.611 5.611 18 C 0.517 3.483 19 O -0.591 6.591 20 C -0.119 4.119 21 C -0.099 4.099 22 C 0.066 3.934 23 O -0.406 6.406 24 C 0.084 3.916 25 C -0.176 4.176 26 C 0.061 3.939 27 O -0.406 6.406 28 C 0.064 3.936 29 C -0.155 4.155 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.370 0.630 34 H 0.250 0.750 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.127 0.873 40 H 0.121 0.879 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.061 0.939 47 H 0.088 0.912 48 H 0.068 0.932 49 H 0.106 0.894 50 H 0.069 0.931 51 H 0.109 0.891 52 H 0.085 0.915 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.270 -16.174 28.633 32.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.025 3.975 3 H 0.057 0.943 4 C 0.060 3.940 5 H 0.090 0.910 6 N -0.368 5.368 7 C -0.371 4.371 8 H 0.102 0.898 9 C -0.268 4.268 10 N -0.622 5.622 11 Si 0.803 3.197 12 H -0.204 1.204 13 H -0.227 1.227 14 H -0.200 1.200 15 C -0.190 4.190 16 C -0.016 4.016 17 N -0.345 5.345 18 C 0.308 3.692 19 O -0.471 6.471 20 C -0.158 4.158 21 C -0.137 4.137 22 C -0.010 4.010 23 O -0.326 6.326 24 C 0.026 3.974 25 C -0.214 4.214 26 C -0.015 4.015 27 O -0.325 6.325 28 C -0.013 4.013 29 C -0.193 4.193 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.202 0.798 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.124 0.876 38 H 0.114 0.886 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.080 0.920 47 H 0.106 0.894 48 H 0.086 0.914 49 H 0.124 0.876 50 H 0.087 0.913 51 H 0.127 0.873 52 H 0.104 0.896 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.675 -15.591 28.863 32.847 hybrid contribution 0.152 0.890 -1.644 1.875 sum 1.827 -14.701 27.220 30.990 Atomic orbital electron populations 1.21922 0.94561 1.02331 1.01349 1.21634 0.94691 0.95395 0.85791 0.94262 1.21452 0.95155 0.91035 0.86375 0.91011 1.42519 1.79700 1.12133 1.02476 1.19618 1.36370 0.97093 0.84041 0.89817 1.25587 1.02895 0.96039 1.02233 1.69833 1.53272 1.05905 1.33178 0.85199 0.78008 0.76612 0.79844 1.20415 1.22724 1.20010 1.23390 0.98801 1.01221 0.95616 1.22558 0.96000 0.87827 0.95228 1.48693 1.52264 1.29108 1.04436 1.21126 0.79861 0.85164 0.83060 1.90682 1.42441 1.30071 1.83943 1.21528 1.03797 1.00462 0.90029 1.21127 1.01290 0.99372 0.91932 1.22580 0.99412 0.96721 0.82309 1.87931 1.76497 1.53828 1.14336 1.22242 0.96595 0.92598 0.85919 1.22717 0.99998 0.99261 0.99471 1.22694 1.01672 0.90518 0.86638 1.87923 1.61300 1.41467 1.41810 1.22695 0.91121 0.90377 0.97088 1.22312 1.03034 0.99052 0.94870 0.93182 0.91131 0.92700 0.79825 0.94151 0.92695 0.89192 0.87634 0.88619 0.85535 0.86136 0.92860 0.92505 0.91250 0.91369 0.90280 0.92018 0.89361 0.91370 0.87566 0.91303 0.87300 0.89606 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 9.10 71.98 0.66 -4.24 16 2 C 0.13 4.62 3.21 45.34 0.15 4.77 16 3 H 0.04 1.68 7.72 -2.38 -0.02 1.66 16 4 C 0.17 6.27 3.14 46.18 0.14 6.41 16 5 H 0.07 2.59 7.80 -2.38 -0.02 2.57 16 6 N -0.73 -35.70 5.22 -317.32 -1.66 -37.36 16 7 C -0.24 -12.75 9.96 84.03 0.84 -11.91 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 C -0.08 -4.23 5.50 84.86 0.47 -3.76 16 10 N -0.97 -59.21 13.06 21.65 0.28 -58.93 16 11 Si 0.97 45.02 29.55 68.60 2.03 47.05 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 13 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 14 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 15 C -0.15 -4.35 6.77 31.98 0.22 -4.13 16 16 C 0.11 2.14 6.69 86.86 0.58 2.72 16 17 N -0.61 -17.11 3.07 -788.08 -2.42 -19.53 16 18 C 0.52 14.58 7.64 87.66 0.67 15.25 16 19 O -0.59 -22.43 15.02 -3.01 -0.05 -22.47 16 20 C -0.12 -1.94 4.71 29.85 0.14 -1.80 16 21 C -0.10 -1.94 4.87 30.59 0.15 -1.79 16 22 C 0.07 0.92 5.75 71.98 0.41 1.33 16 23 O -0.41 -7.67 10.00 -148.98 -1.49 -9.16 16 24 C 0.08 1.12 2.69 30.71 0.08 1.20 16 25 C -0.18 -2.10 5.77 30.69 0.18 -1.92 16 26 C 0.06 0.61 6.84 72.02 0.49 1.10 16 27 O -0.41 -5.94 10.77 -148.98 -1.60 -7.54 16 28 C 0.06 0.66 6.84 72.01 0.49 1.15 16 29 C -0.15 -2.02 5.79 30.68 0.18 -1.84 16 30 H 0.05 1.81 6.88 -2.39 -0.02 1.79 16 31 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 33 H 0.37 20.19 7.57 -92.71 -0.70 19.49 16 34 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.11 1.44 7.48 -2.39 -0.02 1.42 16 38 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.12 1.38 7.85 -2.39 -0.02 1.36 16 41 H 0.05 1.30 8.10 -2.39 -0.02 1.29 16 42 H 0.06 1.35 8.10 -2.38 -0.02 1.33 16 43 H 0.07 0.69 7.97 -2.38 -0.02 0.67 16 44 H 0.07 0.71 8.09 -2.39 -0.02 0.69 16 45 H 0.08 0.75 7.79 -2.39 -0.02 0.74 16 46 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.09 0.81 7.97 -2.38 -0.02 0.79 16 48 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 49 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 51 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 53 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -74.57 418.58 1.11 -73.46 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: 0.17 Total: 31.95 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 5.84 Total: 2.52 kcal Atomic # 7 Polarization: -112.02 SS G_CDS: -3.79 Total: -115.81 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -3.14 Total: -39.17 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -74.57 1.11 -73.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283921025.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.773 kcal (2) G-P(sol) polarization free energy of solvation -74.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds