Wall clock time and date at job start Wed Apr 1 2020 00:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 113.99767 * 2 1 4 4 C 1.53003 * 109.47041 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.54331 * 305.04570 * 4 3 2 6 6 O 1.21278 * 119.99965 * 126.57521 * 5 4 3 7 7 N 1.34775 * 119.99697 * 306.57803 * 5 4 3 8 8 C 1.46920 * 120.63447 * 354.99826 * 7 5 4 9 9 C 1.53196 * 108.89394 * 233.55864 * 8 7 5 10 10 C 1.53066 * 109.29663 * 305.57627 * 9 8 7 11 11 H 1.09001 * 109.34670 * 301.13254 * 10 9 8 12 12 N 1.46496 * 109.45481 * 181.24476 * 10 9 8 13 13 C 1.36934 * 120.00484 * 84.78920 * 12 10 9 14 14 H 1.08003 * 119.99518 * 359.97438 * 13 12 10 15 15 C 1.38806 * 120.00346 * 179.97438 * 13 12 10 16 16 N 1.31614 * 119.99930 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00117 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46728 * 90.00237 * 17 15 13 19 19 H 1.48500 * 109.47337 * 210.00043 * 17 15 13 20 20 H 1.48503 * 109.47077 * 330.00410 * 17 15 13 21 21 C 1.53043 * 109.65938 * 61.15261 * 10 9 8 22 22 H 1.08998 * 109.49613 * 58.65177 * 21 10 9 23 23 C 1.52999 * 109.49961 * 178.75203 * 21 10 9 24 24 C 1.46935 * 120.62796 * 175.01842 * 7 5 4 25 25 C 1.53174 * 109.61647 * 65.26471 * 4 3 2 26 26 C 1.53096 * 109.16529 * 176.89028 * 25 4 3 27 27 O 1.42897 * 109.41642 * 302.39705 * 26 25 4 28 28 C 1.42907 * 114.10008 * 61.15418 * 27 26 25 29 29 C 1.53092 * 109.41365 * 298.84423 * 28 27 26 30 30 H 1.09006 * 109.47148 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47195 * 299.99753 * 1 2 3 32 32 H 1.08992 * 109.47284 * 60.00538 * 1 2 3 33 33 H 1.09000 * 109.47071 * 60.00278 * 3 2 1 34 34 H 1.08999 * 109.47023 * 299.99769 * 3 2 1 35 35 H 1.08998 * 109.58778 * 353.41910 * 8 7 5 36 36 H 1.09001 * 109.59163 * 113.69862 * 8 7 5 37 37 H 1.08994 * 109.49624 * 65.39271 * 9 8 7 38 38 H 1.08999 * 109.49629 * 185.48263 * 9 8 7 39 39 H 0.97001 * 119.99550 * 264.78560 * 12 10 9 40 40 H 0.97007 * 119.99921 * 180.02562 * 16 15 13 41 41 H 1.09006 * 109.46829 * 179.84049 * 23 21 10 42 42 H 1.08999 * 109.46572 * 299.83243 * 23 21 10 43 43 H 1.08995 * 109.47653 * 59.83474 * 23 21 10 44 44 H 1.08994 * 109.58532 * 246.15839 * 24 7 5 45 45 H 1.08993 * 109.58412 * 6.58302 * 24 7 5 46 46 H 1.09005 * 109.52537 * 296.80162 * 25 4 3 47 47 H 1.09007 * 109.52438 * 56.98957 * 25 4 3 48 48 H 1.09001 * 109.48211 * 182.40820 * 26 25 4 49 49 H 1.08997 * 109.47712 * 62.37483 * 26 25 4 50 50 H 1.08996 * 109.48012 * 178.86600 * 28 27 26 51 51 H 1.08992 * 109.48707 * 58.83139 * 28 27 26 52 52 H 1.09005 * 109.52161 * 297.70032 * 29 28 27 53 53 H 1.09006 * 109.52550 * 177.51452 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9732 0.3321 1.1637 6 8 4.6925 -0.6262 0.9763 7 7 3.5651 0.6346 2.4121 8 6 2.7848 1.8524 2.6702 9 6 3.4762 2.6601 3.7731 10 6 3.6801 1.7688 5.0007 11 1 2.7133 1.4012 5.3446 12 7 4.3142 2.5462 6.0682 13 6 3.5475 3.3095 6.9076 14 1 2.4751 3.3387 6.7823 15 6 4.1483 4.0456 7.9194 16 7 5.4552 4.0104 8.0717 17 14 3.1023 5.0875 9.0639 18 1 2.6933 4.2748 10.2376 19 1 3.8891 6.2600 9.5237 20 1 1.8930 5.5557 8.3404 21 6 4.5749 0.5829 4.6330 22 1 5.5330 0.9503 4.2656 23 6 4.8017 -0.2886 5.8699 24 6 3.8927 -0.2471 3.5409 25 6 4.0010 0.5420 -1.3095 26 6 5.5311 0.4971 -1.3314 27 8 6.0474 1.8212 -1.1824 28 6 5.6838 2.4544 0.0460 29 6 4.1598 2.5780 0.1232 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 2.7284 2.4499 1.7604 36 1 1.7793 1.5808 2.9919 37 1 4.4443 3.0101 3.4151 38 1 2.8559 3.5155 4.0408 39 1 5.2774 2.5201 6.1805 40 1 5.8750 4.5246 8.7791 41 1 5.4367 -1.1346 5.6068 42 1 5.2871 0.3024 6.6466 43 1 3.8430 -0.6543 6.2375 44 1 2.9784 -0.6899 3.9360 45 1 4.5673 -1.0348 3.2055 46 1 3.6057 -0.4715 -1.3787 47 1 3.6419 1.1323 -2.1526 48 1 5.8690 0.0797 -2.2799 49 1 5.8881 -0.1266 -0.5119 50 1 6.1316 3.4472 0.0896 51 1 6.0428 1.8565 0.8836 52 1 3.8039 3.2095 -0.6909 53 1 3.8781 3.0207 1.0787 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319689144.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:25 Heat of formation + Delta-G solvation = -120.095436 kcal Electronic energy + Delta-G solvation = -33114.727147 eV Core-core repulsion = 28986.557160 eV Total energy + Delta-G solvation = -4128.169988 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.42963 -39.96628 -38.72320 -38.61666 -36.34362 -35.47578 -34.19486 -33.03904 -32.05011 -31.05681 -29.29756 -27.84671 -26.92641 -26.70019 -25.15046 -24.55588 -23.63887 -23.08255 -22.53396 -21.05354 -19.87056 -19.02849 -17.97708 -17.65430 -17.18315 -17.06187 -16.77952 -16.75347 -16.57047 -16.20446 -15.73266 -15.71605 -15.38541 -15.37832 -14.93395 -14.87372 -14.54177 -14.40118 -13.97147 -13.77106 -13.51705 -13.34442 -13.09211 -13.00037 -12.94783 -12.88195 -12.81256 -12.68277 -12.43777 -12.37122 -12.19728 -12.13197 -12.00138 -11.85587 -11.71260 -11.58843 -11.44054 -11.15723 -10.90451 -10.77040 -10.39534 -10.27166 -9.62147 -8.94778 -7.89665 -5.17240 1.49797 1.50562 1.58532 1.60826 1.97027 2.59076 2.68559 2.92260 3.25593 3.43589 3.63082 3.65298 3.76240 3.80693 3.92536 3.92794 4.01249 4.02959 4.25758 4.26442 4.30980 4.36002 4.39836 4.46882 4.51167 4.56050 4.57313 4.61945 4.62689 4.70620 4.74731 4.77607 4.77685 4.82380 4.87774 4.90147 4.94462 5.00192 5.03699 5.08564 5.15240 5.21053 5.31453 5.39292 5.50953 5.57101 5.64304 6.19324 6.20918 6.31352 6.43815 7.16309 7.38307 8.14183 8.37570 9.33910 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014339 B = 0.003322 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.197142 B = 8426.912567 C = 8766.485180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.410 6.410 3 C 0.056 3.944 4 C -0.075 4.075 5 C 0.532 3.468 6 O -0.575 6.575 7 N -0.601 5.601 8 C 0.095 3.905 9 C -0.143 4.143 10 C 0.181 3.819 11 H 0.046 0.954 12 N -0.731 5.731 13 C -0.230 4.230 14 H 0.078 0.922 15 C -0.075 4.075 16 N -0.971 5.971 17 Si 0.966 3.034 18 H -0.292 1.292 19 H -0.301 1.301 20 H -0.266 1.266 21 C -0.098 4.098 22 H 0.051 0.949 23 C -0.130 4.130 24 C 0.129 3.871 25 C -0.116 4.116 26 C 0.044 3.956 27 O -0.394 6.394 28 C 0.058 3.942 29 C -0.151 4.151 30 H 0.088 0.912 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.121 0.879 36 H 0.081 0.919 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.370 0.630 40 H 0.248 0.752 41 H 0.061 0.939 42 H 0.041 0.959 43 H 0.057 0.943 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.095 0.905 48 H 0.104 0.896 49 H 0.054 0.946 50 H 0.114 0.886 51 H 0.024 0.976 52 H 0.114 0.886 53 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.939 -5.382 -20.745 23.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.329 6.329 3 C -0.020 4.020 4 C -0.078 4.078 5 C 0.321 3.679 6 O -0.455 6.455 7 N -0.332 5.332 8 C -0.027 4.027 9 C -0.183 4.183 10 C 0.072 3.928 11 H 0.064 0.936 12 N -0.370 5.370 13 C -0.361 4.361 14 H 0.096 0.904 15 C -0.267 4.267 16 N -0.622 5.622 17 Si 0.796 3.204 18 H -0.220 1.220 19 H -0.228 1.228 20 H -0.191 1.191 21 C -0.118 4.118 22 H 0.069 0.931 23 C -0.188 4.188 24 C 0.005 3.995 25 C -0.154 4.154 26 C -0.032 4.032 27 O -0.313 6.313 28 C -0.019 4.019 29 C -0.188 4.188 30 H 0.107 0.893 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.138 0.862 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.202 0.798 40 H 0.057 0.943 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.091 0.909 47 H 0.114 0.886 48 H 0.122 0.878 49 H 0.072 0.928 50 H 0.132 0.868 51 H 0.043 0.957 52 H 0.133 0.867 53 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.524 -5.888 -20.890 23.702 hybrid contribution 0.001 0.572 1.539 1.642 sum -9.523 -5.317 -19.352 22.213 Atomic orbital electron populations 1.22894 0.79281 1.03539 1.01134 1.87904 1.21493 1.27884 1.95633 1.23077 0.89685 0.85745 1.03511 1.20929 0.96423 0.96375 0.94077 1.20698 0.78529 0.84624 0.84032 1.90573 1.38584 1.31635 1.84729 1.48068 1.53988 1.24508 1.06664 1.22512 0.94801 0.85230 1.00141 1.22510 1.00513 0.99285 0.96040 1.20395 0.94799 0.89900 0.87681 0.93607 1.42583 1.06118 1.53954 1.34334 1.19590 0.91338 1.18271 1.06947 0.90373 1.25454 0.96601 1.03019 1.01589 1.69820 1.09649 1.47099 1.35652 0.85245 0.78024 0.77937 0.79198 1.21957 1.22809 1.19100 1.21588 0.98584 0.96130 0.95510 0.93087 1.21570 1.01699 0.98747 0.96741 1.21531 1.00271 0.92403 0.85251 1.21903 0.96232 1.01988 0.95238 1.22929 0.93571 0.83732 1.02990 1.87872 1.74913 1.29671 1.38865 1.22599 0.94587 0.98657 0.86029 1.22557 0.96117 0.94225 1.05951 0.89329 0.93227 0.92390 0.90174 0.89678 0.86195 0.90033 0.93197 0.90952 0.79838 0.94328 0.92010 0.94012 0.92359 0.90362 0.90314 0.90879 0.88625 0.87780 0.92781 0.86759 0.95734 0.86738 0.88280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.41 -8.09 9.80 -148.98 -1.46 -9.55 16 3 C 0.06 0.89 4.41 71.98 0.32 1.20 16 4 C -0.07 -1.53 0.34 -52.81 -0.02 -1.54 16 5 C 0.53 14.72 4.75 87.66 0.42 15.14 16 6 O -0.58 -19.87 13.07 -3.02 -0.04 -19.91 16 7 N -0.60 -15.83 2.96 -818.90 -2.43 -18.25 16 8 C 0.10 2.11 4.04 86.36 0.35 2.46 16 9 C -0.14 -4.28 5.54 30.68 0.17 -4.11 16 10 C 0.18 6.52 2.19 45.03 0.10 6.61 16 11 H 0.05 1.67 8.08 -2.39 -0.02 1.66 16 12 N -0.73 -34.57 4.41 -322.78 -1.42 -35.99 16 13 C -0.23 -11.97 9.93 84.03 0.83 -11.14 16 14 H 0.08 3.87 7.83 -2.91 -0.02 3.84 16 15 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 16 N -0.97 -58.23 13.06 21.65 0.28 -57.95 16 17 Si 0.97 44.67 29.55 68.60 2.03 46.70 16 18 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 19 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 21 C -0.10 -3.20 2.46 -10.71 -0.03 -3.23 16 22 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 23 C -0.13 -4.25 9.02 71.98 0.65 -3.60 16 24 C 0.13 3.67 5.73 86.36 0.49 4.16 16 25 C -0.12 -2.39 4.45 30.68 0.14 -2.26 16 26 C 0.04 1.06 6.55 72.01 0.47 1.53 16 27 O -0.39 -9.98 10.77 -148.98 -1.60 -11.58 16 28 C 0.06 1.33 6.62 72.01 0.48 1.80 16 29 C -0.15 -2.67 4.61 30.68 0.14 -2.53 16 30 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.08 1.11 4.56 -2.39 -0.01 1.10 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.12 2.06 2.47 -2.39 -0.01 2.05 16 36 H 0.08 1.62 8.08 -2.39 -0.02 1.60 16 37 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.37 19.46 7.50 -92.71 -0.70 18.76 16 40 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 41 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 42 H 0.04 1.63 7.36 -2.39 -0.02 1.62 16 43 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.08 2.43 7.00 -2.39 -0.02 2.41 16 46 H 0.07 1.71 7.89 -2.38 -0.02 1.69 16 47 H 0.10 1.53 8.14 -2.38 -0.02 1.52 16 48 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 49 H 0.05 1.64 5.58 -2.39 -0.01 1.62 16 50 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 51 H 0.02 0.69 7.38 -2.39 -0.02 0.67 16 52 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 53 H 0.10 1.68 4.94 -2.38 -0.01 1.67 16 Total: -1.00 -69.00 393.07 1.79 -67.21 By element: Atomic # 1 Polarization: 36.68 SS G_CDS: 0.21 Total: 36.89 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 6.23 Total: 2.45 kcal Atomic # 7 Polarization: -108.63 SS G_CDS: -3.57 Total: -112.20 kcal Atomic # 8 Polarization: -37.95 SS G_CDS: -3.10 Total: -41.05 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -69.00 1.79 -67.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319689144.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.888 kcal (2) G-P(sol) polarization free energy of solvation -68.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds