Wall clock time and date at job start Wed Apr 1 2020 00:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 113.99925 * 2 1 4 4 C 1.53001 * 109.47469 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.61195 * 65.86026 * 4 3 2 6 6 O 1.21275 * 120.00184 * 238.86741 * 5 4 3 7 7 N 1.34775 * 119.99763 * 58.87134 * 5 4 3 8 8 C 1.46928 * 120.63110 * 5.07963 * 7 5 4 9 9 C 1.53189 * 108.77433 * 233.58706 * 8 7 5 10 10 C 1.53050 * 109.31186 * 305.36168 * 9 8 7 11 11 H 1.08994 * 109.45823 * 181.38504 * 10 9 8 12 12 N 1.46499 * 109.46000 * 301.36356 * 10 9 8 13 13 C 1.36944 * 119.99519 * 274.99631 * 12 10 9 14 14 H 1.07995 * 120.00188 * 0.02562 * 13 12 10 15 15 C 1.38812 * 119.99775 * 180.02562 * 13 12 10 16 16 N 1.31614 * 119.99923 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99952 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47096 * 89.99990 * 17 15 13 19 19 H 1.48506 * 109.47007 * 210.00088 * 17 15 13 20 20 H 1.48496 * 109.47075 * 329.99600 * 17 15 13 21 21 C 1.53036 * 109.53249 * 61.36801 * 10 9 8 22 22 H 1.09001 * 109.50172 * 58.62066 * 21 10 9 23 23 C 1.52999 * 109.49453 * 178.68372 * 21 10 9 24 24 C 1.46930 * 120.62984 * 184.79623 * 7 5 4 25 25 C 1.53180 * 109.54193 * 305.64475 * 4 3 2 26 26 C 1.53089 * 109.16441 * 183.14993 * 25 4 3 27 27 O 1.42902 * 109.41725 * 57.60525 * 26 25 4 28 28 C 1.42903 * 114.09896 * 298.84975 * 27 26 25 29 29 C 1.53087 * 109.41733 * 61.15061 * 28 27 26 30 30 H 1.09000 * 109.47303 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47226 * 299.99641 * 1 2 3 32 32 H 1.08994 * 109.47336 * 59.99662 * 1 2 3 33 33 H 1.09007 * 109.46631 * 60.00501 * 3 2 1 34 34 H 1.08996 * 109.47231 * 300.00324 * 3 2 1 35 35 H 1.09001 * 109.58245 * 353.37176 * 8 7 5 36 36 H 1.09006 * 109.58781 * 113.79858 * 8 7 5 37 37 H 1.08994 * 109.50115 * 65.31179 * 9 8 7 38 38 H 1.09000 * 109.49907 * 185.41654 * 9 8 7 39 39 H 0.96995 * 120.00421 * 94.99463 * 12 10 9 40 40 H 0.97003 * 119.99759 * 180.02562 * 16 15 13 41 41 H 1.09001 * 109.47410 * 59.99438 * 23 21 10 42 42 H 1.09001 * 109.47533 * 180.02562 * 23 21 10 43 43 H 1.09000 * 109.47280 * 299.99789 * 23 21 10 44 44 H 1.08997 * 109.58462 * 246.19939 * 24 7 5 45 45 H 1.08998 * 109.58568 * 6.63219 * 24 7 5 46 46 H 1.09004 * 109.52392 * 303.05437 * 25 4 3 47 47 H 1.08998 * 109.52517 * 63.24466 * 25 4 3 48 48 H 1.09006 * 109.47980 * 297.62724 * 26 25 4 49 49 H 1.08994 * 109.48290 * 177.58899 * 26 25 4 50 50 H 1.09003 * 109.47696 * 301.16720 * 28 27 26 51 51 H 1.09001 * 109.48213 * 181.13891 * 28 27 26 52 52 H 1.09003 * 109.52193 * 182.48999 * 29 28 27 53 53 H 1.08999 * 109.52349 * 62.29815 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 3.9944 0.5659 -1.2945 6 8 4.6300 -0.4669 -1.2814 7 7 3.6986 1.1603 -2.4674 8 6 3.0271 2.4668 -2.4962 9 6 1.7772 2.3595 -3.3753 10 6 2.1725 1.8254 -4.7541 11 1 1.2886 1.7713 -5.3895 12 7 3.1565 2.7244 -5.3620 13 6 2.7384 3.8292 -6.0548 14 1 1.6833 4.0379 -6.1527 15 6 3.6707 4.6808 -6.6313 16 7 3.2689 5.7428 -7.2968 17 14 5.4957 4.3195 -6.4626 18 1 5.9390 3.4697 -7.5969 19 1 6.2559 5.5951 -6.4730 20 1 5.7429 3.6065 -5.1837 21 6 2.7807 0.4289 -4.6067 22 1 2.0578 -0.2347 -4.1323 23 6 3.1454 -0.1176 -5.9885 24 6 4.0471 0.5169 -3.7415 25 6 3.9794 0.3060 1.1741 26 6 5.5089 0.2552 1.2134 27 8 6.0256 1.5828 1.3255 28 6 5.6821 2.4368 0.2325 29 6 4.1595 2.5752 0.1538 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.6885 1.8463 0.8901 34 1 1.6885 1.8464 -0.8899 35 1 2.7389 2.7518 -1.4844 36 1 3.7022 3.2156 -2.9107 37 1 1.0639 1.6779 -2.9120 38 1 1.3227 3.3443 -3.4833 39 1 4.1041 2.5373 -5.2737 40 1 3.9205 6.3377 -7.7000 41 1 3.8692 0.5457 -6.4621 42 1 3.5782 -1.1124 -5.8832 43 1 2.2482 -0.1755 -6.6047 44 1 4.8036 1.1099 -4.2554 45 1 4.4320 -0.4851 -3.5516 46 1 3.6048 0.7274 2.1070 47 1 3.5847 -0.7017 1.0442 48 1 5.8811 -0.2035 0.2973 49 1 5.8311 -0.3339 2.0720 50 1 6.0565 2.0067 -0.6965 51 1 6.1290 3.4193 0.3844 52 1 3.8936 3.1904 -0.7059 53 1 3.7886 3.0425 1.0660 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319689152.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:33 Heat of formation + Delta-G solvation = -114.098141 kcal Electronic energy + Delta-G solvation = -33773.373787 eV Core-core repulsion = 29645.463862 eV Total energy + Delta-G solvation = -4127.909925 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.49414 -40.15419 -38.73144 -38.71731 -36.26011 -35.39993 -34.25182 -33.13932 -32.06727 -31.50743 -29.29131 -27.90490 -27.05446 -26.69254 -25.20094 -24.56585 -23.95613 -23.05334 -22.71027 -20.47292 -19.92580 -19.45943 -17.98171 -17.64671 -17.35324 -17.09070 -16.80268 -16.76115 -16.57738 -16.22820 -15.95007 -15.71445 -15.48227 -15.13719 -15.09467 -14.89461 -14.76272 -14.48838 -14.20382 -13.80000 -13.51861 -13.36033 -13.23988 -13.17176 -12.98918 -12.93113 -12.83472 -12.66244 -12.50579 -12.40318 -12.21862 -12.07501 -11.95731 -11.94971 -11.69603 -11.63160 -11.42909 -11.23508 -10.97646 -10.77944 -10.43839 -10.31666 -9.64804 -9.23880 -7.98209 -5.28798 1.35448 1.37704 1.44178 1.55585 1.93661 2.48636 2.66226 2.89874 3.22489 3.34364 3.58541 3.63464 3.65035 3.73450 3.88350 3.90935 3.96602 3.99700 4.17077 4.21970 4.23184 4.31644 4.35976 4.43029 4.49857 4.52332 4.57303 4.60010 4.61357 4.62253 4.67838 4.73129 4.77130 4.83842 4.86421 4.89257 4.97109 5.00843 5.08777 5.09713 5.13675 5.17150 5.23475 5.25653 5.40144 5.58959 5.84563 6.16981 6.18022 6.25813 6.41002 7.11256 7.12535 7.89288 8.07487 9.23612 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012575 B = 0.004413 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.154271 B = 6343.042494 C = 7128.165019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.407 6.407 3 C 0.058 3.942 4 C -0.074 4.074 5 C 0.529 3.471 6 O -0.573 6.573 7 N -0.601 5.601 8 C 0.096 3.904 9 C -0.143 4.143 10 C 0.179 3.821 11 H 0.051 0.949 12 N -0.741 5.741 13 C -0.211 4.211 14 H 0.064 0.936 15 C -0.055 4.055 16 N -0.983 5.983 17 Si 0.936 3.064 18 H -0.286 1.286 19 H -0.300 1.300 20 H -0.258 1.258 21 C -0.099 4.099 22 H 0.087 0.913 23 C -0.136 4.136 24 C 0.120 3.880 25 C -0.113 4.113 26 C 0.047 3.953 27 O -0.393 6.393 28 C 0.058 3.942 29 C -0.159 4.159 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.121 0.879 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.361 0.639 40 H 0.255 0.745 41 H 0.042 0.958 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.051 0.949 45 H 0.083 0.917 46 H 0.094 0.906 47 H 0.074 0.926 48 H 0.050 0.950 49 H 0.106 0.894 50 H 0.025 0.975 51 H 0.118 0.882 52 H 0.100 0.900 53 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.491 -10.592 19.163 22.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.326 6.326 3 C -0.018 4.018 4 C -0.077 4.077 5 C 0.318 3.682 6 O -0.453 6.453 7 N -0.332 5.332 8 C -0.026 4.026 9 C -0.184 4.184 10 C 0.071 3.929 11 H 0.069 0.931 12 N -0.385 5.385 13 C -0.342 4.342 14 H 0.082 0.918 15 C -0.247 4.247 16 N -0.634 5.634 17 Si 0.765 3.235 18 H -0.212 1.212 19 H -0.227 1.227 20 H -0.183 1.183 21 C -0.119 4.119 22 H 0.105 0.895 23 C -0.194 4.194 24 C -0.003 4.003 25 C -0.151 4.151 26 C -0.029 4.029 27 O -0.312 6.312 28 C -0.019 4.019 29 C -0.196 4.196 30 H 0.110 0.890 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.138 0.862 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.195 0.805 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.101 0.899 46 H 0.112 0.888 47 H 0.092 0.908 48 H 0.068 0.932 49 H 0.124 0.876 50 H 0.044 0.956 51 H 0.136 0.864 52 H 0.118 0.882 53 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.083 -11.102 19.222 22.411 hybrid contribution 0.880 0.343 -1.018 1.389 sum -2.203 -10.759 18.204 21.260 Atomic orbital electron populations 1.22906 0.79341 1.03651 1.01041 1.87896 1.21413 1.27687 1.95621 1.22986 0.89882 0.85765 1.03156 1.20916 0.96243 0.97773 0.92817 1.20745 0.78176 0.83789 0.85456 1.90583 1.41611 1.25793 1.87319 1.48099 1.58656 1.21101 1.05382 1.22353 0.94705 0.83466 1.02064 1.22410 0.96817 1.02173 0.96955 1.20382 0.91859 0.88164 0.92542 0.93093 1.42804 1.04191 1.27406 1.64111 1.18997 0.93095 0.99155 1.22922 0.91812 1.25234 1.00955 0.97487 1.01020 1.69843 1.34080 1.17086 1.42405 0.85710 0.82621 0.76665 0.78479 1.21226 1.22708 1.18297 1.21720 0.96961 0.96901 0.96269 0.89493 1.21655 1.01918 1.00377 0.95441 1.21620 0.96859 0.98330 0.83458 1.21840 0.96199 1.00408 0.96663 1.22871 0.93501 0.83641 1.02894 1.87876 1.75596 1.22824 1.44905 1.22620 0.94501 0.95672 0.89094 1.22701 0.96421 0.94175 1.06288 0.89013 0.92342 0.93561 0.89561 0.90873 0.86188 0.92134 0.90544 0.91125 0.80477 0.93644 0.93854 0.91533 0.92022 0.93110 0.89868 0.88802 0.90755 0.93226 0.87570 0.95618 0.86426 0.88158 0.86804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.41 -8.65 9.65 -148.98 -1.44 -10.08 16 3 C 0.06 1.06 4.47 71.98 0.32 1.38 16 4 C -0.07 -1.61 0.34 -52.81 -0.02 -1.63 16 5 C 0.53 15.23 4.96 87.66 0.44 15.67 16 6 O -0.57 -20.10 13.24 -3.01 -0.04 -20.14 16 7 N -0.60 -17.06 2.96 -818.05 -2.42 -19.48 16 8 C 0.10 2.51 3.84 86.36 0.33 2.84 16 9 C -0.14 -3.97 5.45 30.67 0.17 -3.80 16 10 C 0.18 5.92 2.53 45.02 0.11 6.03 16 11 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 12 N -0.74 -30.78 3.44 -322.81 -1.11 -31.89 16 13 C -0.21 -10.93 10.41 84.03 0.87 -10.06 16 14 H 0.06 3.63 8.06 -2.91 -0.02 3.60 16 15 C -0.06 -3.10 5.50 84.86 0.47 -2.63 16 16 N -0.98 -60.51 13.97 21.65 0.30 -60.21 16 17 Si 0.94 44.18 27.74 68.60 1.90 46.09 16 18 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 19 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 20 H -0.26 -11.09 6.52 99.48 0.65 -10.44 16 21 C -0.10 -2.83 2.69 -10.57 -0.03 -2.86 16 22 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 23 C -0.14 -3.84 9.05 71.98 0.65 -3.19 16 24 C 0.12 3.66 5.43 86.51 0.47 4.13 16 25 C -0.11 -2.45 4.30 30.68 0.13 -2.32 16 26 C 0.05 1.14 6.55 72.01 0.47 1.61 16 27 O -0.39 -9.81 10.77 -148.98 -1.60 -11.41 16 28 C 0.06 1.30 6.62 72.01 0.48 1.77 16 29 C -0.16 -2.94 4.57 30.68 0.14 -2.80 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 31 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.07 1.31 4.03 -2.39 -0.01 1.30 16 35 H 0.12 2.44 2.62 -2.39 -0.01 2.43 16 36 H 0.06 1.89 7.74 -2.38 -0.02 1.87 16 37 H 0.08 1.78 7.54 -2.39 -0.02 1.76 16 38 H 0.07 2.12 8.14 -2.39 -0.02 2.11 16 39 H 0.36 15.09 3.77 -92.71 -0.35 14.74 16 40 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 41 H 0.04 1.40 7.54 -2.39 -0.02 1.38 16 42 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.05 1.69 6.63 -2.39 -0.02 1.68 16 45 H 0.08 2.61 7.03 -2.39 -0.02 2.59 16 46 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 47 H 0.07 1.84 7.56 -2.39 -0.02 1.82 16 48 H 0.05 1.49 5.77 -2.38 -0.01 1.47 16 49 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 50 H 0.03 0.70 7.38 -2.39 -0.02 0.68 16 51 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 52 H 0.10 1.82 4.64 -2.39 -0.01 1.81 16 53 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -68.90 384.63 2.35 -66.55 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: 0.50 Total: 34.80 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 6.26 Total: 5.78 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -3.23 Total: -111.58 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -3.08 Total: -41.64 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.90 Total: 46.09 kcal Total: -68.90 2.35 -66.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319689152.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.548 kcal (2) G-P(sol) polarization free energy of solvation -68.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds