Wall clock time and date at job start Wed Apr 1 2020 00:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00309 * 2 1 4 4 H 1.09003 * 112.84662 * 21.69253 * 3 2 1 5 5 C 1.53773 * 113.61918 * 250.49440 * 3 2 1 6 6 H 1.09003 * 113.62085 * 156.24920 * 5 3 2 7 7 C 1.53002 * 113.61273 * 25.43152 * 5 3 2 8 8 C 1.53784 * 87.08068 * 270.88609 * 5 3 2 9 9 H 1.08992 * 113.61711 * 89.11846 * 8 5 3 10 10 N 1.46508 * 113.61095 * 220.01655 * 8 5 3 11 11 C 1.34770 * 119.99789 * 255.49654 * 10 8 5 12 12 O 1.21351 * 120.00483 * 359.97438 * 11 10 8 13 13 C 1.49448 * 119.99928 * 180.02562 * 11 10 8 14 14 O 1.21348 * 120.00132 * 359.97438 * 13 11 10 15 15 N 1.34777 * 120.00348 * 179.97438 * 13 11 10 16 16 C 1.46496 * 120.00321 * 179.97438 * 15 13 11 17 17 C 1.52998 * 109.47491 * 179.97438 * 16 15 13 18 18 C 1.53000 * 109.47198 * 299.99898 * 17 16 15 19 19 C 1.53007 * 109.47130 * 59.99880 * 17 16 15 20 20 C 1.50702 * 109.47227 * 179.97438 * 17 16 15 21 21 H 1.07998 * 120.00077 * 357.00723 * 20 17 16 22 22 C 1.37877 * 119.99556 * 177.00736 * 20 17 16 23 23 N 1.31508 * 120.00639 * 5.54253 * 22 20 17 24 24 Si 1.86809 * 119.99693 * 185.54178 * 22 20 17 25 25 H 1.48496 * 109.46848 * 85.00038 * 24 22 20 26 26 H 1.48503 * 109.46966 * 204.99849 * 24 22 20 27 27 H 1.48500 * 109.46948 * 325.00193 * 24 22 20 28 28 C 1.53780 * 87.07983 * 334.56141 * 8 5 3 29 29 C 1.52991 * 113.61717 * 270.88629 * 28 8 5 30 30 C 1.52999 * 113.60863 * 139.97845 * 28 8 5 31 31 H 1.09005 * 109.47121 * 300.00221 * 1 2 3 32 32 H 1.09009 * 109.46807 * 59.99790 * 1 2 3 33 33 H 1.08994 * 109.47436 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.46944 * 79.50664 * 7 5 3 35 35 H 1.09004 * 109.47417 * 199.50695 * 7 5 3 36 36 H 1.09003 * 109.47147 * 319.50549 * 7 5 3 37 37 H 0.96996 * 120.00052 * 75.49463 * 10 8 5 38 38 H 0.96996 * 119.99738 * 359.97438 * 15 13 11 39 39 H 1.08998 * 109.47368 * 300.00297 * 16 15 13 40 40 H 1.09007 * 109.47247 * 60.00009 * 16 15 13 41 41 H 1.09004 * 109.46953 * 53.93396 * 18 17 16 42 42 H 1.08996 * 109.47097 * 173.92997 * 18 17 16 43 43 H 1.08997 * 109.47363 * 293.93637 * 18 17 16 44 44 H 1.08997 * 109.46590 * 59.99766 * 19 17 16 45 45 H 1.08995 * 109.47155 * 179.97438 * 19 17 16 46 46 H 1.09005 * 109.46919 * 300.00483 * 19 17 16 47 47 H 0.97004 * 120.00862 * 179.97438 * 23 22 20 48 48 H 1.09005 * 109.47306 * 177.00202 * 29 28 8 49 49 H 1.08999 * 109.47397 * 297.00300 * 29 28 8 50 50 H 1.09000 * 109.47471 * 57.00139 * 29 28 8 51 51 H 1.08991 * 109.47600 * 303.00272 * 30 28 8 52 52 H 1.08999 * 109.46984 * 63.00750 * 30 28 8 53 53 H 1.09004 * 109.46681 * 182.99875 * 30 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3298 2.0717 0.3713 5 6 2.6907 1.6768 -1.3280 6 1 2.7665 2.7514 -1.4943 7 6 2.1263 0.9271 -2.5365 8 6 3.9724 1.0479 -0.7566 9 1 4.0655 -0.0181 -0.9636 10 7 5.1884 1.7994 -1.0778 11 6 6.0320 1.3434 -2.0247 12 8 5.7847 0.3102 -2.6111 13 6 7.2726 2.1097 -2.3519 14 8 7.5202 3.1427 -1.7653 15 7 8.1166 1.6535 -3.2986 16 6 9.3324 2.4049 -3.6197 17 6 10.1078 1.6752 -4.7184 18 6 10.4872 0.2754 -4.2311 19 6 9.2339 1.5604 -5.9691 20 6 11.3582 2.4486 -5.0492 21 1 11.5537 3.3927 -4.5627 22 6 12.2526 1.9506 -5.9728 23 7 11.9640 0.8577 -6.6448 24 14 13.8746 2.8286 -6.2697 25 1 14.8735 2.3745 -5.2693 26 1 14.3644 2.5147 -7.6360 27 1 13.6750 4.2944 -6.1399 28 6 3.4077 1.3575 0.6398 29 6 3.7912 2.7433 1.1626 30 6 3.6558 0.2458 1.6614 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3634 -1.0276 -0.0005 34 1 1.1945 1.3964 -2.8525 35 1 2.8461 0.9617 -3.3543 36 1 1.9360 -0.1109 -2.2637 37 1 5.3862 2.6251 -0.6089 38 1 7.9189 0.8276 -3.7672 39 1 9.0622 3.4023 -3.9664 40 1 9.9553 2.4863 -2.7288 41 1 9.5924 -0.2458 -3.8908 42 1 10.9438 -0.2826 -5.0486 43 1 11.1956 0.3572 -3.4068 44 1 8.9636 2.5577 -6.3162 45 1 9.7865 1.0409 -6.7520 46 1 8.3292 1.0013 -5.7301 47 1 12.5930 0.5075 -7.2949 48 1 3.3143 2.9121 2.1282 49 1 4.8736 2.8018 1.2769 50 1 3.4589 3.5032 0.4554 51 1 3.2318 -0.6880 1.2924 52 1 4.7284 0.1234 1.8118 53 1 3.1841 0.5103 2.6078 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328922137.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:48 Heat of formation + Delta-G solvation = -122.921296 kcal Electronic energy + Delta-G solvation = -31006.021052 eV Core-core repulsion = 26877.728526 eV Total energy + Delta-G solvation = -4128.292526 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.20107 -41.18379 -39.50023 -38.19701 -37.48348 -35.26956 -34.33905 -33.09113 -32.74906 -28.56378 -28.48089 -28.20704 -27.60258 -27.39242 -27.03280 -25.92281 -23.87554 -21.77049 -21.46946 -20.73372 -20.28611 -19.13291 -18.15643 -17.90560 -17.42165 -17.06865 -16.64410 -16.53802 -16.44178 -16.16034 -15.77429 -15.53114 -15.09414 -14.96107 -14.75655 -14.61957 -14.23769 -14.17415 -14.05673 -13.72341 -13.27677 -13.25407 -13.20818 -13.12733 -13.04923 -12.74363 -12.70271 -12.59962 -12.56945 -12.33298 -12.32343 -12.27565 -12.13251 -11.87744 -11.60288 -11.51187 -11.30921 -11.19880 -10.76688 -10.60951 -10.40813 -10.33228 -10.15275 -10.04662 -8.02191 -6.17487 0.34162 1.36548 1.44791 1.47499 1.54952 2.13584 2.45457 2.65310 2.74223 3.21971 3.29998 3.45507 3.50424 3.63650 3.91169 4.18697 4.29909 4.33785 4.38077 4.45796 4.46596 4.55077 4.65230 4.67088 4.68004 4.75188 4.79629 4.89678 4.91942 4.92687 4.95315 5.01913 5.02531 5.04672 5.07647 5.10291 5.15609 5.20694 5.23732 5.38426 5.41477 5.46877 5.50143 5.63746 5.67965 5.97110 6.08718 6.17698 6.32064 6.38933 6.41051 6.74720 6.86686 6.96468 7.49988 8.97710 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.026785 B = 0.002135 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.092591 B =13109.573719 C =13528.360961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.380 6.380 3 C 0.087 3.913 4 H 0.104 0.896 5 C -0.142 4.142 6 H 0.111 0.889 7 C -0.134 4.134 8 C 0.126 3.874 9 H 0.098 0.902 10 N -0.676 5.676 11 C 0.512 3.488 12 O -0.541 6.541 13 C 0.497 3.503 14 O -0.550 6.550 15 N -0.682 5.682 16 C 0.143 3.857 17 C 0.049 3.951 18 C -0.121 4.121 19 C -0.123 4.123 20 C -0.526 4.526 21 H 0.052 0.948 22 C 0.026 3.974 23 N -0.901 5.901 24 Si 0.948 3.052 25 H -0.278 1.278 26 H -0.286 1.286 27 H -0.273 1.273 28 C -0.082 4.082 29 C -0.138 4.138 30 C -0.131 4.131 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.036 0.964 36 H 0.059 0.941 37 H 0.419 0.581 38 H 0.413 0.587 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.030 0.970 42 H 0.060 0.940 43 H 0.024 0.976 44 H 0.023 0.977 45 H 0.063 0.937 46 H 0.028 0.972 47 H 0.260 0.740 48 H 0.085 0.915 49 H 0.063 0.937 50 H 0.072 0.928 51 H 0.058 0.942 52 H 0.048 0.952 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.435 0.886 16.015 29.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.298 6.298 3 C 0.028 3.972 4 H 0.122 0.878 5 C -0.162 4.162 6 H 0.129 0.871 7 C -0.191 4.191 8 C 0.022 3.978 9 H 0.116 0.884 10 N -0.330 5.330 11 C 0.292 3.708 12 O -0.419 6.419 13 C 0.278 3.722 14 O -0.429 6.429 15 N -0.333 5.333 16 C 0.020 3.980 17 C 0.049 3.951 18 C -0.179 4.179 19 C -0.181 4.181 20 C -0.565 4.565 21 H 0.070 0.930 22 C -0.174 4.174 23 N -0.539 5.539 24 Si 0.775 3.225 25 H -0.204 1.204 26 H -0.212 1.212 27 H -0.198 1.198 28 C -0.083 4.083 29 C -0.195 4.195 30 C -0.188 4.188 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.111 0.889 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.258 0.742 38 H 0.250 0.750 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.048 0.952 42 H 0.079 0.921 43 H 0.043 0.957 44 H 0.043 0.957 45 H 0.082 0.918 46 H 0.047 0.953 47 H 0.069 0.931 48 H 0.104 0.896 49 H 0.082 0.918 50 H 0.091 0.909 51 H 0.077 0.923 52 H 0.067 0.933 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -24.233 0.586 15.862 28.969 hybrid contribution 1.140 0.395 -0.659 1.375 sum -23.093 0.982 15.202 27.665 Atomic orbital electron populations 1.22984 0.79500 1.03661 1.00930 1.87848 1.21208 1.26470 1.94274 1.22989 0.93901 0.85896 0.94378 0.87805 1.23632 0.95205 1.01161 0.96176 0.87136 1.21505 1.00377 1.00782 0.96484 1.23010 0.81590 0.96572 0.96670 0.88447 1.45796 1.22191 1.27638 1.37347 1.20100 0.84316 0.85086 0.81274 1.90749 1.75372 1.24321 1.51415 1.20362 0.85028 0.85669 0.81184 1.90701 1.75773 1.24522 1.51907 1.46086 1.22548 1.27516 1.37178 1.21544 0.83331 0.94576 0.98514 1.18392 0.93015 0.93090 0.90621 1.21679 0.98196 0.98198 0.99849 1.21720 0.96906 0.98878 1.00575 1.21212 1.05339 1.06267 1.23639 0.92969 1.25513 1.00774 0.95811 0.95304 1.69945 1.36173 1.22629 1.25167 0.85724 0.80666 0.79059 0.77048 1.20427 1.21186 1.19764 1.22478 0.94337 0.98185 0.93259 1.21669 1.02250 0.92869 1.02675 1.21572 1.01156 0.97711 0.98351 0.92595 0.93398 0.88926 0.91388 0.94506 0.92221 0.74213 0.74973 0.92665 0.92630 0.95156 0.92078 0.95708 0.95750 0.91792 0.95336 0.93068 0.89597 0.91778 0.90906 0.92284 0.93260 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.86 113.37 1.23 1.46 16 2 O -0.38 -5.75 7.80 -148.98 -1.16 -6.91 16 3 C 0.09 1.13 3.64 31.12 0.11 1.24 16 4 H 0.10 0.88 7.85 -2.39 -0.02 0.86 16 5 C -0.14 -2.34 3.78 -10.27 -0.04 -2.38 16 6 H 0.11 1.60 7.63 -2.39 -0.02 1.58 16 7 C -0.13 -2.51 9.50 71.98 0.68 -1.83 16 8 C 0.13 2.56 3.15 45.52 0.14 2.70 16 9 H 0.10 2.52 7.45 -2.39 -0.02 2.50 16 10 N -0.68 -15.88 5.26 -441.37 -2.32 -18.20 16 11 C 0.51 15.84 7.89 87.27 0.69 16.53 16 12 O -0.54 -19.12 16.12 -3.25 -0.05 -19.18 16 13 C 0.50 17.40 7.89 87.27 0.69 18.08 16 14 O -0.55 -20.67 16.48 -3.24 -0.05 -20.72 16 15 N -0.68 -25.35 4.90 -464.42 -2.27 -27.63 16 16 C 0.14 6.01 4.50 86.38 0.39 6.40 16 17 C 0.05 2.32 0.50 -52.93 -0.03 2.29 16 18 C -0.12 -5.60 8.03 71.98 0.58 -5.02 16 19 C -0.12 -5.68 8.11 71.98 0.58 -5.09 16 20 C -0.53 -27.52 8.01 25.60 0.20 -27.32 16 21 H 0.05 2.73 7.75 -2.91 -0.02 2.71 16 22 C 0.03 1.36 5.13 84.66 0.43 1.80 16 23 N -0.90 -48.71 9.45 21.45 0.20 -48.50 16 24 Si 0.95 42.47 29.54 68.60 2.03 44.50 16 25 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 26 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 27 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 28 C -0.08 -1.16 1.35 -51.66 -0.07 -1.23 16 29 C -0.14 -1.45 7.97 71.98 0.57 -0.87 16 30 C -0.13 -1.95 8.99 71.98 0.65 -1.30 16 31 H 0.06 0.35 8.14 -2.38 -0.02 0.33 16 32 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16 33 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.06 1.20 7.07 -2.39 -0.02 1.19 16 37 H 0.42 8.64 6.13 -92.71 -0.57 8.07 16 38 H 0.41 15.13 5.63 -92.71 -0.52 14.61 16 39 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 41 H 0.03 1.23 6.71 -2.38 -0.02 1.21 16 42 H 0.06 3.10 6.25 -2.39 -0.01 3.08 16 43 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.06 3.27 6.10 -2.39 -0.01 3.26 16 46 H 0.03 1.16 6.86 -2.38 -0.02 1.14 16 47 H 0.26 13.56 8.31 -92.70 -0.77 12.79 16 48 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 49 H 0.06 0.78 7.23 -2.39 -0.02 0.76 16 50 H 0.07 0.65 7.32 -2.39 -0.02 0.63 16 51 H 0.06 1.03 7.07 -2.39 -0.02 1.01 16 52 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 53 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 Total: -1.00 -61.32 413.24 3.01 -58.31 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: -0.18 Total: 32.87 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 6.82 Total: 5.46 kcal Atomic # 7 Polarization: -89.94 SS G_CDS: -4.39 Total: -94.34 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -1.27 Total: -46.81 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -61.32 3.01 -58.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328922137.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.607 kcal (2) G-P(sol) polarization free energy of solvation -61.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds