Wall clock time and date at job start Wed Apr 1 2020 00:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99857 * 2 1 4 4 H 1.09005 * 112.85016 * 21.69182 * 3 2 1 5 5 C 1.53781 * 113.61578 * 250.49740 * 3 2 1 6 6 H 1.09001 * 113.68934 * 334.57353 * 5 3 2 7 7 C 1.53000 * 113.61667 * 105.46895 * 5 3 2 8 8 C 1.53782 * 87.08022 * 220.02093 * 5 3 2 9 9 H 1.09001 * 113.61144 * 270.80005 * 8 5 3 10 10 N 1.46504 * 113.61824 * 139.98149 * 8 5 3 11 11 C 1.34774 * 119.99819 * 104.49619 * 10 8 5 12 12 O 1.21346 * 120.00475 * 0.02562 * 11 10 8 13 13 C 1.49453 * 119.99375 * 179.97438 * 11 10 8 14 14 O 1.21346 * 120.00146 * 0.02562 * 13 11 10 15 15 N 1.34774 * 119.99371 * 180.02562 * 13 11 10 16 16 C 1.46504 * 119.99815 * 180.02562 * 15 13 11 17 17 C 1.53001 * 109.47415 * 179.97438 * 16 15 13 18 18 C 1.53000 * 109.47124 * 59.99442 * 17 16 15 19 19 C 1.53000 * 109.46989 * 299.99767 * 17 16 15 20 20 C 1.50694 * 109.47168 * 179.97438 * 17 16 15 21 21 H 1.08000 * 120.00563 * 359.97438 * 20 17 16 22 22 C 1.37885 * 119.99902 * 179.97438 * 20 17 16 23 23 N 1.31516 * 119.99913 * 0.02562 * 22 20 17 24 24 Si 1.86805 * 119.99854 * 179.72538 * 22 20 17 25 25 H 1.48504 * 109.47032 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46816 * 120.00323 * 24 22 20 27 27 H 1.48495 * 109.46630 * 240.00111 * 24 22 20 28 28 C 1.53776 * 87.08192 * 25.43019 * 8 5 3 29 29 C 1.53001 * 113.61689 * 89.12116 * 28 8 5 30 30 C 1.52997 * 113.61513 * 220.01949 * 28 8 5 31 31 H 1.09005 * 109.47167 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47368 * 299.99560 * 1 2 3 33 33 H 1.08997 * 109.47074 * 60.00009 * 1 2 3 34 34 H 1.08998 * 109.47111 * 157.49852 * 7 5 3 35 35 H 1.08996 * 109.46565 * 277.50023 * 7 5 3 36 36 H 1.08996 * 109.46903 * 37.49958 * 7 5 3 37 37 H 0.96996 * 119.99617 * 284.50338 * 10 8 5 38 38 H 0.96996 * 120.00568 * 0.02562 * 15 13 11 39 39 H 1.09000 * 109.46981 * 59.99638 * 16 15 13 40 40 H 1.09002 * 109.46732 * 299.99696 * 16 15 13 41 41 H 1.08995 * 109.47131 * 180.02562 * 18 17 16 42 42 H 1.08998 * 109.47544 * 300.00581 * 18 17 16 43 43 H 1.09007 * 109.46721 * 60.00490 * 18 17 16 44 44 H 1.09000 * 109.47156 * 300.00206 * 19 17 16 45 45 H 1.08998 * 109.47223 * 59.99698 * 19 17 16 46 46 H 1.08995 * 109.47095 * 179.97438 * 19 17 16 47 47 H 0.97001 * 119.99646 * 180.02562 * 23 22 20 48 48 H 1.09001 * 109.46825 * 59.99372 * 29 28 8 49 49 H 1.08997 * 109.47307 * 180.02562 * 29 28 8 50 50 H 1.09009 * 109.46754 * 299.99899 * 29 28 8 51 51 H 1.09003 * 109.47125 * 60.00075 * 30 28 8 52 52 H 1.09001 * 109.47610 * 180.02562 * 30 28 8 53 53 H 1.08996 * 109.47620 * 300.00512 * 30 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3297 2.0718 0.3713 5 6 2.6905 1.6770 -1.3282 6 1 3.0275 0.8148 -1.9038 7 6 1.8918 2.6763 -2.1674 8 6 3.8009 2.3279 -0.4867 9 1 3.6118 3.3747 -0.2489 10 7 5.1482 2.0989 -1.0147 11 6 5.7979 3.0902 -1.6563 12 8 5.2673 4.1725 -1.7962 13 6 7.1725 2.8567 -2.1945 14 8 7.7033 1.7746 -2.0542 15 7 7.8224 3.8481 -2.8356 16 6 9.1697 3.6192 -3.3637 17 6 9.6759 4.8947 -4.0402 18 6 9.7151 6.0329 -3.0185 19 6 8.7358 5.2711 -5.1872 20 6 11.0619 4.6593 -4.5828 21 1 11.5348 3.6965 -4.4573 22 6 11.7266 5.6733 -5.2396 23 7 11.1511 6.8460 -5.3920 24 14 13.4478 5.3839 -5.9055 25 1 13.8691 3.9929 -5.6005 26 1 13.4507 5.5904 -7.3760 27 1 14.3913 6.3381 -5.2696 28 6 3.4076 1.3577 0.6397 29 6 4.1553 0.0238 0.5886 30 6 3.4216 1.9952 2.0305 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 2.5625 3.1905 -2.8558 35 1 1.1269 2.1453 -2.7339 36 1 1.4172 3.4050 -1.5104 37 1 5.5724 1.2339 -0.9027 38 1 7.3983 4.7133 -2.9474 39 1 9.1416 2.8086 -4.0919 40 1 9.8393 3.3506 -2.5466 41 1 10.0754 6.9416 -3.5006 42 1 8.7128 6.2032 -2.6256 43 1 10.3850 5.7646 -2.2014 44 1 8.7078 4.4603 -5.9150 45 1 7.7335 5.4415 -4.7943 46 1 9.0962 6.1800 -5.6689 47 1 11.6185 7.5592 -5.8544 48 1 5.2268 0.2044 0.6741 49 1 3.8261 -0.6091 1.4127 50 1 3.9452 -0.4744 -0.3580 51 1 2.7169 2.8263 2.0563 52 1 3.1344 1.2516 2.7740 53 1 4.4239 2.3618 2.2521 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328922139.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:56 Heat of formation + Delta-G solvation = -125.820440 kcal Electronic energy + Delta-G solvation = -30900.501055 eV Core-core repulsion = 26772.082813 eV Total energy + Delta-G solvation = -4128.418242 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.19127 -41.15536 -39.49432 -38.19910 -37.55540 -35.29129 -34.37506 -33.18066 -32.74493 -28.62616 -28.39207 -28.21749 -27.59134 -27.48086 -27.11699 -25.74100 -23.75895 -21.91135 -21.47086 -20.73538 -20.30223 -19.13500 -18.23088 -17.92867 -17.48019 -17.06657 -16.66805 -16.50442 -16.35636 -16.17625 -15.67491 -15.45592 -15.03641 -14.94063 -14.76476 -14.66900 -14.50203 -14.26561 -14.05131 -13.64826 -13.32475 -13.22467 -13.15340 -13.11911 -13.06674 -12.74568 -12.71540 -12.58798 -12.55872 -12.40946 -12.28491 -12.26415 -12.12108 -11.77801 -11.65966 -11.58904 -11.51286 -11.30337 -10.76141 -10.61937 -10.41670 -10.27711 -10.15482 -10.05928 -8.01757 -6.17969 0.33407 1.33692 1.42937 1.47382 1.56606 2.12816 2.44784 2.63022 2.97348 3.22078 3.22354 3.39083 3.49161 3.61720 3.75749 4.18875 4.27744 4.34124 4.34327 4.41913 4.46712 4.47775 4.58584 4.63674 4.67423 4.77033 4.82257 4.86735 4.90726 4.92123 4.94681 5.01273 5.03516 5.03697 5.05536 5.08265 5.16768 5.21186 5.22648 5.32174 5.37389 5.44897 5.47979 5.64443 5.67743 5.95910 6.10867 6.18638 6.31310 6.38491 6.41268 6.72927 6.86374 6.95960 7.49865 8.97669 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.027523 B = 0.002090 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.097681 B =13395.297609 C =13653.622714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.385 6.385 3 C 0.087 3.913 4 H 0.109 0.891 5 C -0.140 4.140 6 H 0.093 0.907 7 C -0.138 4.138 8 C 0.123 3.877 9 H 0.117 0.883 10 N -0.676 5.676 11 C 0.515 3.485 12 O -0.537 6.537 13 C 0.496 3.504 14 O -0.552 6.552 15 N -0.680 5.680 16 C 0.143 3.857 17 C 0.049 3.951 18 C -0.123 4.123 19 C -0.123 4.123 20 C -0.523 4.523 21 H 0.051 0.949 22 C 0.025 3.975 23 N -0.901 5.901 24 Si 0.949 3.051 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.283 1.283 28 C -0.081 4.081 29 C -0.127 4.127 30 C -0.137 4.137 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.042 0.958 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.417 0.583 38 H 0.413 0.587 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.030 0.970 43 H 0.023 0.977 44 H 0.023 0.977 45 H 0.029 0.971 46 H 0.063 0.937 47 H 0.260 0.740 48 H 0.058 0.942 49 H 0.074 0.926 50 H 0.059 0.941 51 H 0.069 0.931 52 H 0.071 0.929 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.729 -10.671 13.437 28.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.304 6.304 3 C 0.028 3.972 4 H 0.127 0.873 5 C -0.160 4.160 6 H 0.111 0.889 7 C -0.196 4.196 8 C 0.019 3.981 9 H 0.134 0.866 10 N -0.329 5.329 11 C 0.296 3.704 12 O -0.414 6.414 13 C 0.276 3.724 14 O -0.431 6.431 15 N -0.332 5.332 16 C 0.020 3.980 17 C 0.049 3.951 18 C -0.181 4.181 19 C -0.181 4.181 20 C -0.562 4.562 21 H 0.069 0.931 22 C -0.175 4.175 23 N -0.539 5.539 24 Si 0.776 3.224 25 H -0.196 1.196 26 H -0.209 1.209 27 H -0.209 1.209 28 C -0.082 4.082 29 C -0.184 4.184 30 C -0.194 4.194 31 H 0.111 0.889 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.256 0.744 38 H 0.251 0.749 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.048 0.952 43 H 0.043 0.957 44 H 0.042 0.958 45 H 0.048 0.952 46 H 0.082 0.918 47 H 0.069 0.931 48 H 0.077 0.923 49 H 0.093 0.907 50 H 0.078 0.922 51 H 0.088 0.912 52 H 0.090 0.910 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.568 -10.652 13.356 28.305 hybrid contribution 1.086 0.272 -0.756 1.351 sum -21.482 -10.380 12.600 26.981 Atomic orbital electron populations 1.22964 0.79920 1.03649 1.00779 1.87916 1.20970 1.27003 1.94486 1.23709 0.93230 0.85884 0.94346 0.87348 1.23612 0.96196 0.99168 0.97036 0.88882 1.21672 0.99587 0.98433 0.99883 1.22747 0.79614 1.00659 0.95076 0.86556 1.45701 1.17216 1.15264 1.54734 1.20024 0.86072 0.84923 0.79421 1.90739 1.68246 1.25051 1.57344 1.20385 0.87150 0.84806 0.80027 1.90712 1.68810 1.25036 1.58514 1.46063 1.17820 1.15383 1.53952 1.21556 0.80137 0.99454 0.96864 1.18394 0.94207 0.90114 0.92417 1.21700 0.97555 1.01474 0.97384 1.21701 0.96104 1.01539 0.98781 1.21257 1.00499 0.98129 1.36320 0.93063 1.25513 1.00828 0.95027 0.96126 1.69934 1.38200 1.03169 1.42640 0.85649 0.80859 0.78059 0.77879 1.19649 1.20920 1.20909 1.22470 0.94948 0.95825 0.94989 1.21432 0.99104 0.94623 1.03222 1.21769 1.02499 1.00939 0.94186 0.88852 0.92818 0.93563 0.93879 0.91645 0.91308 0.74353 0.74891 0.92773 0.92696 0.91787 0.95156 0.95742 0.95793 0.95179 0.91770 0.93065 0.92312 0.90719 0.92240 0.91249 0.91031 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.86 113.37 1.23 1.45 16 2 O -0.39 -5.75 9.80 -148.98 -1.46 -7.21 16 3 C 0.09 1.17 3.25 31.12 0.10 1.27 16 4 H 0.11 1.10 7.54 -2.38 -0.02 1.08 16 5 C -0.14 -2.36 3.64 -10.27 -0.04 -2.40 16 6 H 0.09 1.78 7.66 -2.39 -0.02 1.76 16 7 C -0.14 -2.27 9.71 71.98 0.70 -1.57 16 8 C 0.12 2.29 3.21 45.52 0.15 2.44 16 9 H 0.12 2.32 7.45 -2.39 -0.02 2.30 16 10 N -0.68 -15.66 5.25 -441.37 -2.32 -17.98 16 11 C 0.52 15.36 7.89 87.27 0.69 16.05 16 12 O -0.54 -17.70 16.11 -3.24 -0.05 -17.75 16 13 C 0.50 17.18 7.89 87.27 0.69 17.87 16 14 O -0.55 -20.93 16.48 -3.23 -0.05 -20.99 16 15 N -0.68 -24.94 4.95 -464.40 -2.30 -27.24 16 16 C 0.14 5.97 4.50 86.38 0.39 6.36 16 17 C 0.05 2.30 0.50 -52.93 -0.03 2.27 16 18 C -0.12 -5.62 8.08 71.98 0.58 -5.04 16 19 C -0.12 -5.64 8.08 71.98 0.58 -5.06 16 20 C -0.52 -27.30 8.01 25.60 0.21 -27.09 16 21 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 22 C 0.02 1.30 5.15 84.66 0.44 1.73 16 23 N -0.90 -48.35 9.35 21.45 0.20 -48.15 16 24 Si 0.95 42.40 29.54 68.60 2.03 44.42 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 26 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 27 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 28 C -0.08 -1.18 1.35 -51.66 -0.07 -1.25 16 29 C -0.13 -1.90 7.46 71.98 0.54 -1.36 16 30 C -0.14 -1.65 9.19 71.98 0.66 -0.99 16 31 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 0.94 7.94 -2.39 -0.02 0.92 16 37 H 0.42 9.14 6.05 -92.71 -0.56 8.58 16 38 H 0.41 14.76 5.63 -92.71 -0.52 14.24 16 39 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.06 3.24 6.07 -2.39 -0.01 3.22 16 42 H 0.03 1.21 6.86 -2.39 -0.02 1.19 16 43 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.03 1.20 6.86 -2.39 -0.02 1.19 16 46 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 47 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 48 H 0.06 0.90 7.04 -2.39 -0.02 0.88 16 49 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 50 H 0.06 0.98 7.19 -2.38 -0.02 0.96 16 51 H 0.07 0.69 7.95 -2.39 -0.02 0.67 16 52 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 53 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -59.82 415.66 2.68 -57.14 By element: Atomic # 1 Polarization: 33.25 SS G_CDS: -0.18 Total: 33.07 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 6.81 Total: 4.67 kcal Atomic # 7 Polarization: -88.95 SS G_CDS: -4.42 Total: -93.37 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -1.57 Total: -45.94 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -59.82 2.68 -57.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328922139.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.680 kcal (2) G-P(sol) polarization free energy of solvation -59.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds