Wall clock time and date at job start Tue Mar 31 2020 22:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46909 * 2 1 4 4 O 1.45200 * 109.47158 * 120.00037 * 2 1 3 5 5 C 1.34225 * 117.00476 * 149.99932 * 4 2 1 6 6 O 1.20832 * 119.99515 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00614 * 179.97438 * 5 4 2 8 8 C 1.53035 * 109.46121 * 180.02562 * 7 5 4 9 9 C 1.53191 * 109.31064 * 178.63019 * 8 7 5 10 10 N 1.46924 * 108.78009 * 54.63070 * 9 8 7 11 11 C 1.34777 * 120.62813 * 126.36522 * 10 9 8 12 12 O 1.21283 * 120.00463 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99675 * 179.72946 * 11 10 9 14 14 H 1.08997 * 109.47478 * 40.27795 * 13 11 10 15 15 N 1.46905 * 109.47232 * 160.27974 * 13 11 10 16 16 C 1.53001 * 109.47277 * 280.27534 * 13 11 10 17 17 C 1.52996 * 109.47345 * 174.99661 * 16 13 11 18 18 C 1.53001 * 109.47345 * 180.02562 * 17 16 13 19 19 C 1.50695 * 109.47322 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00318 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99836 * 180.02562 * 19 18 17 22 22 N 1.31509 * 120.00227 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99628 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47556 * 359.97438 * 23 21 19 25 25 H 1.48508 * 109.47304 * 120.00206 * 23 21 19 26 26 H 1.48506 * 109.47271 * 239.99527 * 23 21 19 27 27 C 1.46921 * 118.73733 * 306.64950 * 10 9 8 28 28 C 1.52760 * 109.00994 * 53.30469 * 27 10 9 29 29 H 1.08996 * 109.47085 * 300.00011 * 1 2 3 30 30 H 1.09003 * 109.47213 * 60.00494 * 1 2 3 31 31 H 1.09006 * 109.46800 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47085 * 239.99989 * 2 1 3 33 33 H 1.08996 * 109.47256 * 60.00094 * 3 2 1 34 34 H 1.08998 * 109.46871 * 180.02562 * 3 2 1 35 35 H 1.08995 * 109.47080 * 299.99931 * 3 2 1 36 36 H 1.09002 * 109.45717 * 299.97325 * 7 5 4 37 37 H 1.08994 * 109.50277 * 58.67540 * 8 7 5 38 38 H 1.08997 * 109.49664 * 298.57473 * 8 7 5 39 39 H 1.09006 * 109.58943 * 294.84276 * 9 8 7 40 40 H 1.09004 * 109.70326 * 174.49483 * 9 8 7 41 41 H 1.00898 * 110.99843 * 59.99824 * 15 13 11 42 42 H 1.00899 * 110.99818 * 183.95616 * 15 13 11 43 43 H 1.09000 * 109.47456 * 295.00621 * 16 13 11 44 44 H 1.09003 * 109.46674 * 54.99990 * 16 13 11 45 45 H 1.08994 * 109.47734 * 300.00421 * 17 16 13 46 46 H 1.09008 * 109.46545 * 60.00669 * 17 16 13 47 47 H 1.09007 * 109.47133 * 300.00979 * 18 17 16 48 48 H 1.09007 * 109.47128 * 60.00124 * 18 17 16 49 49 H 0.97000 * 120.00222 * 180.02562 * 22 21 19 50 50 H 1.09004 * 109.58490 * 173.13980 * 27 10 9 51 51 H 1.09002 * 109.58518 * 293.56338 * 27 10 9 52 52 H 1.09005 * 109.56000 * 185.55371 * 28 27 10 53 53 H 1.09001 * 109.36136 * 65.50440 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 3.1936 -1.3170 1.0852 6 8 3.8019 -1.2989 0.0413 7 6 3.7600 -2.0487 2.2747 8 6 5.1031 -2.6764 1.8950 9 6 5.6918 -3.3902 3.1159 10 7 4.7015 -4.3474 3.6274 11 6 5.0276 -5.6427 3.8070 12 8 6.1477 -6.0280 3.5464 13 6 4.0023 -6.6111 4.3382 14 1 3.0340 -6.4004 3.8843 15 7 4.4089 -7.9840 4.0095 16 6 3.8971 -6.4604 5.8571 17 6 2.7703 -7.3526 6.3814 18 6 2.6647 -7.2014 7.9003 19 6 1.5552 -8.0808 8.4168 20 1 0.9829 -8.6872 7.7305 21 6 1.2708 -8.1110 9.7656 22 7 1.9680 -7.3729 10.6014 23 14 -0.1040 -9.2016 10.4058 24 1 -0.7301 -9.9265 9.2711 25 1 0.4514 -10.1814 11.3738 26 1 -1.1267 -8.3635 11.0818 27 6 3.3471 -3.8670 3.9332 28 6 2.7862 -3.1468 2.7083 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1299 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 3.9065 -1.3476 3.0962 37 1 5.7886 -1.8964 1.5640 38 1 4.9538 -3.3959 1.0900 39 1 5.9261 -2.6586 3.8893 40 1 6.5993 -3.9215 2.8288 41 1 5.3043 -8.2038 4.4192 42 1 3.7062 -8.6481 4.2982 43 1 4.8395 -6.7566 6.3178 44 1 3.6825 -5.4208 6.1050 45 1 1.8279 -7.0564 5.9208 46 1 2.9850 -8.3922 6.1335 47 1 3.6071 -7.4974 8.3613 48 1 2.4499 -6.1618 8.1478 49 1 1.7681 -7.3945 11.5504 50 1 2.7069 -4.7132 4.1828 51 1 3.3861 -3.1750 4.7745 52 1 1.8227 -2.7015 2.9563 53 1 2.6587 -3.8619 1.8956 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353170076.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:15 Heat of formation + Delta-G solvation = -173.438154 kcal Electronic energy + Delta-G solvation = -30298.263181 eV Core-core repulsion = 26167.780080 eV Total energy + Delta-G solvation = -4130.483101 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.97702 -41.21331 -38.79471 -37.74374 -37.38234 -35.28055 -34.49663 -33.75589 -32.99034 -32.23140 -29.47943 -28.21130 -28.00852 -26.62536 -24.68931 -24.06962 -23.43982 -22.08000 -21.71098 -21.20401 -19.97104 -18.98682 -18.54374 -18.43891 -17.56222 -17.08488 -16.98778 -16.52917 -16.31415 -16.01579 -15.82370 -15.39897 -15.26462 -15.14375 -14.92101 -14.66087 -14.52200 -14.26913 -14.14298 -13.85602 -13.57643 -13.56581 -13.37585 -13.27615 -13.16496 -12.92986 -12.87477 -12.71987 -12.57077 -12.39126 -12.33634 -12.25563 -11.95458 -11.89944 -11.70663 -11.59199 -11.47085 -11.40955 -11.33387 -11.20325 -10.67009 -10.54350 -9.76043 -9.63205 -8.18445 -6.28981 1.12424 1.41170 1.42387 1.53956 1.55067 1.65083 1.92839 2.42332 3.15319 3.36186 3.51045 3.58331 3.68216 3.70637 3.80884 3.93997 3.98002 3.99949 4.05160 4.12209 4.16689 4.26343 4.32925 4.43064 4.53083 4.59150 4.67031 4.67714 4.73745 4.75550 4.79561 4.82045 4.83911 4.86108 4.98187 5.03226 5.04344 5.13220 5.19416 5.21837 5.22542 5.26902 5.50709 5.52061 5.55225 5.76489 5.88122 6.04391 6.26544 6.34584 6.49570 6.70235 6.89398 7.14227 7.40654 8.93247 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011854 B = 0.002205 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.478236 B =12693.148831 C =14334.713688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 C -0.167 4.167 4 O -0.352 6.352 5 C 0.469 3.531 6 O -0.539 6.539 7 C -0.076 4.076 8 C -0.108 4.108 9 C 0.113 3.887 10 N -0.611 5.611 11 C 0.522 3.478 12 O -0.574 6.574 13 C 0.083 3.917 14 H 0.122 0.878 15 N -0.834 5.834 16 C -0.134 4.134 17 C -0.094 4.094 18 C 0.024 3.976 19 C -0.538 4.538 20 H 0.063 0.937 21 C -0.003 4.003 22 N -0.934 5.934 23 Si 0.962 3.038 24 H -0.260 1.260 25 H -0.283 1.283 26 H -0.278 1.278 27 C 0.099 3.901 28 C -0.119 4.119 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.092 0.908 36 H 0.138 0.862 37 H 0.090 0.910 38 H 0.056 0.944 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.345 0.655 42 H 0.357 0.643 43 H 0.046 0.954 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.053 0.947 47 H -0.017 1.017 48 H -0.005 1.005 49 H 0.262 0.738 50 H 0.101 0.899 51 H 0.097 0.903 52 H 0.112 0.888 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.823 17.677 -20.788 27.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.016 3.984 3 C -0.224 4.224 4 O -0.268 6.268 5 C 0.314 3.686 6 O -0.428 6.428 7 C -0.094 4.094 8 C -0.146 4.146 9 C -0.010 4.010 10 N -0.344 5.344 11 C 0.311 3.689 12 O -0.453 6.453 13 C -0.032 4.032 14 H 0.139 0.861 15 N -0.366 5.366 16 C -0.174 4.174 17 C -0.132 4.132 18 C -0.013 4.013 19 C -0.576 4.576 20 H 0.081 0.919 21 C -0.200 4.200 22 N -0.575 5.575 23 Si 0.787 3.213 24 H -0.184 1.184 25 H -0.209 1.209 26 H -0.204 1.204 27 C -0.023 4.023 28 C -0.158 4.158 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.110 0.890 36 H 0.155 0.845 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.110 0.890 40 H 0.097 0.903 41 H 0.158 0.842 42 H 0.172 0.828 43 H 0.065 0.935 44 H 0.094 0.906 45 H 0.085 0.915 46 H 0.071 0.929 47 H 0.001 0.999 48 H 0.014 0.986 49 H 0.071 0.929 50 H 0.119 0.881 51 H 0.115 0.885 52 H 0.130 0.870 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.088 17.785 -21.862 28.203 hybrid contribution -0.218 -0.632 1.507 1.649 sum -1.306 17.154 -20.354 26.651 Atomic orbital electron populations 1.21909 0.90450 1.03537 1.04388 1.22982 0.96490 0.92967 0.85991 1.22200 1.01026 0.94716 1.04438 1.86574 1.36109 1.62329 1.41834 1.24062 0.78983 0.75613 0.89971 1.90652 1.60248 1.59859 1.32085 1.21157 0.95712 0.97891 0.94688 1.21712 0.95339 1.00096 0.97468 1.21641 0.91853 0.91555 0.95912 1.48194 1.13715 1.07691 1.64804 1.20859 0.88592 0.82929 0.76529 1.90632 1.23883 1.78052 1.52748 1.21432 0.97902 0.89646 0.94210 0.86090 1.58714 1.08572 1.01982 1.67372 1.22240 0.99271 1.01815 0.94051 1.21432 0.97273 0.98458 0.96014 1.19001 0.94702 0.95309 0.92292 1.21755 1.17489 1.25485 0.92903 0.91889 1.25973 0.99161 0.97235 0.97647 1.70099 1.42164 1.41810 1.03397 0.85445 0.78883 0.78540 0.78457 1.18372 1.20883 1.20416 1.22010 0.81601 1.00866 0.97809 1.21836 0.99195 0.96409 0.98312 0.90723 0.88601 0.91857 0.91255 0.90664 0.93615 0.88952 0.84471 0.89170 0.92555 0.88954 0.90315 0.84200 0.82761 0.93527 0.90562 0.91492 0.92859 0.99868 0.98628 0.92908 0.88052 0.88495 0.86961 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.57 71.98 0.69 -0.59 16 2 C 0.07 0.95 3.18 30.59 0.10 1.05 16 3 C -0.17 -1.85 9.55 71.98 0.69 -1.16 16 4 O -0.35 -5.71 9.76 -51.37 -0.50 -6.21 16 5 C 0.47 8.55 7.23 71.23 0.51 9.06 16 6 O -0.54 -13.13 15.20 21.95 0.33 -12.80 16 7 C -0.08 -1.04 2.59 -11.52 -0.03 -1.07 16 8 C -0.11 -1.80 4.65 30.67 0.14 -1.66 16 9 C 0.11 2.09 6.43 86.36 0.56 2.65 16 10 N -0.61 -12.86 2.98 -819.73 -2.44 -15.30 16 11 C 0.52 14.71 6.95 87.66 0.61 15.32 16 12 O -0.57 -20.53 15.66 -3.04 -0.05 -20.57 16 13 C 0.08 2.16 2.36 44.17 0.10 2.26 16 14 H 0.12 2.64 6.53 -2.39 -0.02 2.62 16 15 N -0.83 -22.78 8.94 -171.79 -1.54 -24.31 16 16 C -0.13 -4.01 4.61 30.59 0.14 -3.87 16 17 C -0.09 -3.37 4.92 30.59 0.15 -3.22 16 18 C 0.02 1.19 4.97 29.85 0.15 1.34 16 19 C -0.54 -29.28 9.11 25.60 0.23 -29.05 16 20 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 21 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 22 N -0.93 -55.76 13.29 21.45 0.28 -55.47 16 23 Si 0.96 43.09 29.54 68.60 2.03 45.12 16 24 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 26 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 27 C 0.10 1.48 5.55 86.22 0.48 1.96 16 28 C -0.12 -1.53 5.28 30.53 0.16 -1.37 16 29 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.07 1.15 7.16 -2.39 -0.02 1.13 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.09 1.41 8.07 -2.39 -0.02 1.39 16 38 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 39 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 40 H 0.08 1.82 7.00 -2.38 -0.02 1.81 16 41 H 0.34 10.06 8.58 -89.70 -0.77 9.29 16 42 H 0.36 8.88 7.55 -89.69 -0.68 8.20 16 43 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.08 2.14 7.21 -2.39 -0.02 2.12 16 45 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.05 1.86 6.87 -2.38 -0.02 1.84 16 47 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 48 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 49 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 50 H 0.10 1.52 5.20 -2.38 -0.01 1.51 16 51 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 52 H 0.11 1.08 8.08 -2.38 -0.02 1.06 16 53 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -73.74 419.52 2.72 -71.02 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: -0.54 Total: 26.57 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 5.15 Total: -8.04 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -3.69 Total: -95.08 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -0.22 Total: -39.58 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -73.74 2.72 -71.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353170076.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.422 kcal (2) G-P(sol) polarization free energy of solvation -73.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds