Wall clock time and date at job start Tue Mar 31 2020 22:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47026 * 2 1 4 4 O 1.45205 * 109.47295 * 120.00198 * 2 1 3 5 5 C 1.34221 * 116.99894 * 89.99956 * 4 2 1 6 6 O 1.20827 * 120.00674 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99924 * 180.02562 * 5 4 2 8 8 C 1.53033 * 109.46207 * 59.92820 * 7 5 4 9 9 C 1.53192 * 109.31270 * 181.38592 * 8 7 5 10 10 N 1.46926 * 108.77820 * 305.36633 * 9 8 7 11 11 C 1.34773 * 120.62904 * 233.58715 * 10 9 8 12 12 O 1.21277 * 120.00553 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99638 * 180.02562 * 11 10 9 14 14 H 1.08994 * 109.47266 * 319.99616 * 13 11 10 15 15 N 1.46905 * 109.47016 * 199.99725 * 13 11 10 16 16 C 1.53003 * 109.47251 * 79.99898 * 13 11 10 17 17 C 1.53001 * 109.47134 * 185.00067 * 16 13 11 18 18 C 1.53003 * 109.47134 * 180.02562 * 17 16 13 19 19 C 1.50699 * 109.47026 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00117 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99652 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99449 * 180.02562 * 21 19 18 23 23 Si 1.86790 * 120.00239 * 0.02562 * 21 19 18 24 24 H 1.48507 * 109.47087 * 89.99951 * 23 21 19 25 25 H 1.48495 * 109.47201 * 209.99847 * 23 21 19 26 26 H 1.48503 * 109.47339 * 330.00044 * 23 21 19 27 27 C 1.46927 * 118.73580 * 53.60911 * 10 9 8 28 28 C 1.53041 * 109.46128 * 179.97438 * 7 5 4 29 29 H 1.08998 * 109.47532 * 60.00190 * 1 2 3 30 30 H 1.09004 * 109.47221 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46788 * 299.99341 * 1 2 3 32 32 H 1.09001 * 109.47034 * 239.99919 * 2 1 3 33 33 H 1.08999 * 109.47184 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47214 * 300.00567 * 3 2 1 35 35 H 1.09001 * 109.47281 * 60.00070 * 3 2 1 36 36 H 1.09002 * 109.44689 * 299.96626 * 7 5 4 37 37 H 1.09000 * 109.49457 * 61.43935 * 8 7 5 38 38 H 1.08995 * 109.50116 * 301.34105 * 8 7 5 39 39 H 1.09006 * 109.58809 * 185.57967 * 9 8 7 40 40 H 1.09002 * 109.58657 * 65.15954 * 9 8 7 41 41 H 1.00902 * 110.99450 * 176.04503 * 15 13 11 42 42 H 1.00895 * 110.99992 * 300.00073 * 15 13 11 43 43 H 1.09000 * 109.47154 * 304.99885 * 16 13 11 44 44 H 1.08999 * 109.47339 * 64.99986 * 16 13 11 45 45 H 1.09000 * 109.46952 * 299.99942 * 17 16 13 46 46 H 1.08999 * 109.47073 * 59.99757 * 17 16 13 47 47 H 1.09000 * 109.47154 * 299.99818 * 18 17 16 48 48 H 1.09001 * 109.46906 * 60.00202 * 18 17 16 49 49 H 0.97001 * 119.99999 * 180.02562 * 22 21 19 50 50 H 1.08997 * 109.58859 * 66.17990 * 27 10 9 51 51 H 1.09001 * 109.58530 * 186.46228 * 27 10 9 52 52 H 1.09005 * 109.49689 * 58.66128 * 28 7 5 53 53 H 1.08994 * 109.52286 * 298.58038 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0141 -0.6845 1.1856 5 6 2.2172 -2.0075 1.0851 6 8 1.9974 -2.5750 0.0412 7 6 2.7183 -2.7854 2.2745 8 6 1.7229 -2.6493 3.4289 9 6 2.2524 -3.4125 4.6471 10 7 2.5315 -4.7997 4.2514 11 6 1.9965 -5.8299 4.9360 12 8 1.2773 -5.6165 5.8890 13 6 2.2928 -7.2472 4.5181 14 1 2.2883 -7.3136 3.4302 15 7 1.2675 -8.1443 5.0677 16 6 3.6677 -7.6585 5.0485 17 6 4.0226 -9.0501 4.5208 18 6 5.3972 -9.4616 5.0518 19 6 5.7464 -10.8326 4.5325 20 1 5.0571 -11.3576 3.8879 21 6 6.9465 -11.4161 4.8795 22 7 7.2514 -12.6123 4.4259 23 14 8.1390 -10.5077 5.9938 24 1 7.8490 -10.8466 7.4103 25 1 9.5297 -10.9102 5.6634 26 1 7.9865 -9.0441 5.7939 27 6 3.4054 -5.0423 3.0955 28 6 2.8624 -4.2609 1.8949 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9564 0.8900 36 1 3.6875 -2.3930 2.5826 37 1 0.7603 -3.0640 3.1300 38 1 1.6027 -1.5963 3.6834 39 1 1.5032 -3.4021 5.4388 40 1 3.1692 -2.9423 5.0027 41 1 1.4072 -9.0913 4.7487 42 1 1.2517 -8.1008 6.0756 43 1 4.4163 -6.9408 4.7127 44 1 3.6459 -7.6778 6.1381 45 1 3.2740 -9.7677 4.8566 46 1 4.0443 -9.0308 3.4312 47 1 6.1460 -8.7441 4.7164 48 1 5.3749 -9.4811 6.1414 49 1 8.0955 -13.0230 4.6703 50 1 4.4163 -4.7051 3.3245 51 1 3.4190 -6.1075 2.8649 52 1 3.5535 -4.3552 1.0572 53 1 1.8891 -4.6605 1.6103 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353170081.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:19 Heat of formation + Delta-G solvation = -170.718875 kcal Electronic energy + Delta-G solvation = -30325.985041 eV Core-core repulsion = 26195.619856 eV Total energy + Delta-G solvation = -4130.365185 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.97529 -41.21457 -38.78875 -37.76103 -37.39558 -35.24571 -34.53064 -33.74029 -33.25983 -32.19495 -29.76287 -28.23066 -28.11083 -26.57588 -24.44519 -24.28109 -23.14045 -22.09234 -21.73668 -21.20707 -19.94509 -18.99690 -18.87839 -18.60143 -17.38488 -17.22841 -16.92903 -16.49160 -16.24764 -16.03146 -15.85036 -15.51195 -15.24367 -15.02327 -14.92204 -14.82822 -14.62305 -14.43509 -14.05234 -14.00669 -13.70342 -13.62022 -13.34478 -13.30662 -13.17827 -13.03275 -12.90907 -12.73114 -12.56057 -12.43121 -12.27882 -11.98747 -11.85719 -11.78476 -11.77777 -11.65108 -11.56217 -11.44328 -11.34933 -11.31199 -10.75682 -10.68859 -9.75848 -9.63490 -8.28301 -6.32133 1.12433 1.36680 1.37528 1.49338 1.54452 1.64549 1.93244 2.36506 3.07397 3.39054 3.42702 3.60979 3.69530 3.70749 3.79544 3.93279 3.96395 3.98037 4.02735 4.11016 4.15387 4.27809 4.31494 4.39354 4.47263 4.58050 4.65593 4.67522 4.73161 4.74489 4.75046 4.82585 4.83599 4.87831 4.95065 4.96944 5.03524 5.07938 5.11416 5.12431 5.20437 5.21511 5.50568 5.51677 5.53270 5.60288 5.68214 6.04571 6.29578 6.34061 6.48097 6.70064 6.76739 7.14261 7.32663 8.88333 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016086 B = 0.002095 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.213388 B =13359.143483 C =14148.256878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.070 3.930 3 C -0.144 4.144 4 O -0.352 6.352 5 C 0.467 3.533 6 O -0.538 6.538 7 C -0.075 4.075 8 C -0.113 4.113 9 C 0.112 3.888 10 N -0.611 5.611 11 C 0.525 3.475 12 O -0.571 6.571 13 C 0.079 3.921 14 H 0.115 0.885 15 N -0.836 5.836 16 C -0.136 4.136 17 C -0.093 4.093 18 C -0.012 4.012 19 C -0.531 4.531 20 H 0.033 0.967 21 C 0.001 3.999 22 N -0.952 5.952 23 Si 0.950 3.050 24 H -0.271 1.271 25 H -0.286 1.286 26 H -0.242 1.242 27 C 0.101 3.899 28 C -0.116 4.116 29 H 0.092 0.908 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.140 0.860 37 H 0.055 0.945 38 H 0.107 0.893 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.355 0.645 42 H 0.346 0.654 43 H 0.083 0.917 44 H 0.058 0.942 45 H 0.050 0.950 46 H 0.060 0.940 47 H 0.024 0.976 48 H 0.012 0.988 49 H 0.265 0.735 50 H 0.100 0.900 51 H 0.098 0.902 52 H 0.093 0.907 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.075 31.951 -6.290 34.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.016 3.984 3 C -0.201 4.201 4 O -0.269 6.269 5 C 0.312 3.688 6 O -0.427 6.427 7 C -0.094 4.094 8 C -0.152 4.152 9 C -0.010 4.010 10 N -0.344 5.344 11 C 0.313 3.687 12 O -0.450 6.450 13 C -0.036 4.036 14 H 0.133 0.867 15 N -0.368 5.368 16 C -0.176 4.176 17 C -0.131 4.131 18 C -0.049 4.049 19 C -0.569 4.569 20 H 0.051 0.949 21 C -0.196 4.196 22 N -0.593 5.593 23 Si 0.773 3.227 24 H -0.197 1.197 25 H -0.211 1.211 26 H -0.166 1.166 27 C -0.021 4.021 28 C -0.154 4.154 29 H 0.111 0.889 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.157 0.843 37 H 0.074 0.926 38 H 0.126 0.874 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.171 0.829 42 H 0.160 0.840 43 H 0.101 0.899 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.042 0.958 48 H 0.030 0.970 49 H 0.074 0.926 50 H 0.118 0.882 51 H 0.116 0.884 52 H 0.112 0.888 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.950 32.267 -6.524 34.694 hybrid contribution 1.232 -1.102 0.447 1.712 sum -9.718 31.165 -6.078 33.206 Atomic orbital electron populations 1.22208 0.93710 1.02145 1.04425 1.22980 0.95227 0.94149 0.86061 1.21898 1.02117 0.91726 1.04376 1.86564 1.76664 1.21859 1.41845 1.24115 0.73317 0.81435 0.89967 1.90662 1.49142 1.70624 1.32282 1.21167 1.02685 0.94579 0.90945 1.21828 0.97366 1.02728 0.93247 1.21689 1.02530 0.79952 0.96843 1.48196 1.48902 1.06181 1.31127 1.20759 0.78351 0.87551 0.82039 1.90633 1.38788 1.85872 1.29730 1.21445 0.90835 0.89735 1.01578 0.86716 1.58689 1.49642 1.12813 1.15685 1.22282 0.96366 0.98126 1.00848 1.21327 0.96852 0.94629 1.00276 1.19530 0.95188 0.94402 0.95819 1.21537 1.03168 1.02281 1.29893 0.94857 1.26047 1.00262 0.95583 0.97671 1.70076 1.24698 1.17086 1.47431 0.85662 0.77530 0.80536 0.78924 1.19680 1.21149 1.16567 1.22069 0.94242 1.02125 0.83668 1.21798 1.03017 0.92267 0.98307 0.88914 0.94031 0.90697 0.91135 0.91650 0.88635 0.90736 0.84266 0.92598 0.87425 0.90021 0.88550 0.82907 0.84010 0.89866 0.92370 0.93110 0.92083 0.95803 0.96971 0.92622 0.88156 0.88377 0.88828 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 9.55 71.98 0.69 -1.22 16 2 C 0.07 0.91 3.18 30.59 0.10 1.00 16 3 C -0.14 -1.06 9.57 71.98 0.69 -0.37 16 4 O -0.35 -5.42 9.76 -51.33 -0.50 -5.92 16 5 C 0.47 8.20 7.23 71.24 0.51 8.72 16 6 O -0.54 -12.90 15.20 21.96 0.33 -12.57 16 7 C -0.07 -0.94 2.59 -11.51 -0.03 -0.97 16 8 C -0.11 -1.45 5.30 30.67 0.16 -1.28 16 9 C 0.11 1.71 6.43 86.36 0.56 2.26 16 10 N -0.61 -11.64 2.97 -818.90 -2.43 -14.08 16 11 C 0.52 13.72 6.95 87.66 0.61 14.33 16 12 O -0.57 -19.00 15.66 -3.02 -0.05 -19.05 16 13 C 0.08 1.97 2.35 44.17 0.10 2.07 16 14 H 0.12 2.55 6.54 -2.39 -0.02 2.54 16 15 N -0.84 -22.32 8.94 -171.79 -1.54 -23.86 16 16 C -0.14 -3.67 4.61 30.60 0.14 -3.53 16 17 C -0.09 -3.19 4.92 30.60 0.15 -3.04 16 18 C -0.01 -0.53 4.04 29.85 0.12 -0.41 16 19 C -0.53 -29.78 9.66 25.60 0.25 -29.54 16 20 H 0.03 2.05 7.99 -2.91 -0.02 2.03 16 21 C 0.00 0.05 5.47 84.66 0.46 0.51 16 22 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 23 Si 0.95 43.49 27.47 68.60 1.88 45.37 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 26 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16 27 C 0.10 1.47 5.59 86.36 0.48 1.95 16 28 C -0.12 -1.70 4.65 30.67 0.14 -1.55 16 29 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 1.11 7.16 -2.39 -0.02 1.09 16 33 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.11 1.01 8.08 -2.39 -0.02 0.99 16 39 H 0.08 1.59 7.01 -2.38 -0.02 1.57 16 40 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.36 8.98 7.55 -89.69 -0.68 8.30 16 42 H 0.35 9.59 8.58 -89.70 -0.77 8.82 16 43 H 0.08 1.98 7.20 -2.39 -0.02 1.96 16 44 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.05 1.77 6.87 -2.39 -0.02 1.75 16 46 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.02 1.01 7.20 -2.39 -0.02 0.99 16 48 H 0.01 0.52 7.57 -2.39 -0.02 0.51 16 49 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 50 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.10 1.50 5.18 -2.39 -0.01 1.49 16 52 H 0.09 1.31 8.07 -2.38 -0.02 1.29 16 53 H 0.06 1.13 8.13 -2.39 -0.02 1.11 16 Total: -1.00 -75.61 415.93 2.54 -73.07 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: -0.60 Total: 27.12 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 5.14 Total: -11.07 kcal Atomic # 7 Polarization: -93.28 SS G_CDS: -3.67 Total: -96.95 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -0.21 Total: -37.54 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.88 Total: 45.37 kcal Total: -75.61 2.54 -73.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353170081.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.653 kcal (2) G-P(sol) polarization free energy of solvation -75.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds