Wall clock time and date at job start Wed Apr 1 2020 00:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 110.88363 * 2 1 4 4 C 1.54917 * 111.00301 * 236.12118 * 2 1 3 5 5 N 1.47422 * 104.83074 * 204.91369 * 4 2 1 6 6 C 1.34776 * 125.64527 * 204.09182 * 5 4 2 7 7 O 1.21509 * 119.99830 * 180.02562 * 6 5 4 8 8 O 1.34636 * 120.00137 * 0.02734 * 6 5 4 9 9 C 1.45206 * 116.99760 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.46809 * 60.00254 * 9 8 6 11 11 C 1.52999 * 109.46961 * 179.97438 * 9 8 6 12 12 C 1.53001 * 109.47412 * 300.00032 * 9 8 6 13 13 C 1.47020 * 108.70191 * 24.12901 * 5 4 2 14 14 C 1.54316 * 107.27568 * 358.94070 * 13 5 4 15 15 H 1.08999 * 110.87697 * 96.23821 * 14 13 5 16 16 C 1.52998 * 110.72220 * 219.44342 * 14 13 5 17 17 N 1.46899 * 109.47090 * 288.52276 * 16 14 13 18 18 C 1.47473 * 110.99992 * 74.02642 * 17 16 14 19 19 C 1.53520 * 87.93191 * 138.70427 * 18 17 16 20 20 O 1.42905 * 114.16835 * 87.62199 * 19 18 17 21 21 C 1.50696 * 114.16961 * 220.32875 * 19 18 17 22 22 H 1.07994 * 120.00108 * 93.84134 * 21 19 18 23 23 C 1.37875 * 119.99921 * 273.83890 * 21 19 18 24 24 N 1.31517 * 120.00067 * 359.97438 * 23 21 19 25 25 Si 1.86800 * 119.99966 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47114 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47166 * 120.00020 * 25 23 21 28 28 H 1.48497 * 109.46957 * 239.99716 * 25 23 21 29 29 C 1.47475 * 111.00167 * 170.00123 * 17 16 14 30 30 H 1.09004 * 109.47256 * 182.42357 * 1 2 3 31 31 H 1.08998 * 109.47483 * 302.42369 * 1 2 3 32 32 H 1.08999 * 109.47641 * 62.42556 * 1 2 3 33 33 H 1.08998 * 110.36726 * 323.75382 * 4 2 1 34 34 H 1.09005 * 110.36534 * 86.07904 * 4 2 1 35 35 H 1.09005 * 109.47057 * 59.99869 * 10 9 8 36 36 H 1.09000 * 109.46861 * 179.97438 * 10 9 8 37 37 H 1.08997 * 109.47269 * 299.99564 * 10 9 8 38 38 H 1.09007 * 109.47117 * 59.99804 * 11 9 8 39 39 H 1.09000 * 109.47310 * 180.02562 * 11 9 8 40 40 H 1.09005 * 109.47365 * 300.00413 * 11 9 8 41 41 H 1.09007 * 109.46608 * 59.99889 * 12 9 8 42 42 H 1.09000 * 109.47011 * 180.02562 * 12 9 8 43 43 H 1.09002 * 109.47219 * 300.00358 * 12 9 8 44 44 H 1.09000 * 109.88493 * 239.51822 * 13 5 4 45 45 H 1.09003 * 109.87996 * 118.35911 * 13 5 4 46 46 H 1.09002 * 109.47021 * 48.52371 * 16 14 13 47 47 H 1.08999 * 109.47428 * 168.52086 * 16 14 13 48 48 H 1.09003 * 113.47751 * 253.46612 * 18 17 16 49 49 H 1.08996 * 113.47972 * 23.94013 * 18 17 16 50 50 H 0.96691 * 113.99969 * 86.16311 * 20 19 18 51 51 H 0.97004 * 120.00161 * 180.02562 * 24 23 21 52 52 H 1.09003 * 113.47577 * 336.06321 * 29 17 16 53 53 H 1.08996 * 113.48328 * 106.52525 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0852 -0.8062 -1.2007 5 7 3.4271 -1.2427 -0.7739 6 6 4.4475 -1.5609 -1.5948 7 8 5.5147 -1.9101 -1.1303 8 8 4.2845 -1.4918 -2.9295 9 6 5.4266 -1.8485 -3.7523 10 6 5.8324 -3.2949 -3.4620 11 6 5.0534 -1.7108 -5.2297 12 6 6.5968 -0.9163 -3.4323 13 6 3.4674 -1.2744 0.6954 14 6 2.0862 -0.8084 1.2019 15 1 1.4451 -1.6619 1.4222 16 6 2.2350 0.0866 2.4338 17 7 2.6481 -0.7283 3.5841 18 6 4.0654 -1.1200 3.4725 19 6 4.2052 -0.8334 4.9743 20 8 3.8860 -1.9447 5.8141 21 6 5.4915 -0.1465 5.3543 22 1 5.5268 0.9302 5.4300 23 6 6.6234 -0.8927 5.6053 24 7 6.5803 -2.2040 5.5137 25 14 8.2177 -0.0413 6.0771 26 1 8.0031 1.4277 6.1113 27 1 8.6513 -0.5100 7.4178 28 1 9.2664 -0.3647 5.0767 29 6 3.0312 0.1237 4.7252 30 1 -0.3634 -1.0268 0.0435 31 1 -0.3634 0.5510 0.8674 32 1 -0.3634 0.4757 -0.9109 33 1 1.4518 -1.6698 -1.4032 34 1 2.1559 -0.1711 -2.0838 35 1 4.9986 -3.9589 -3.6901 36 1 6.6894 -3.5627 -4.0800 37 1 6.0981 -3.3934 -2.4095 38 1 4.7639 -0.6805 -5.4369 39 1 5.9105 -1.9789 -5.8475 40 1 4.2198 -2.3752 -5.4575 41 1 6.8624 -1.0149 -2.3797 42 1 7.4539 -1.1838 -4.0503 43 1 6.3076 0.1141 -3.6391 44 1 4.2425 -0.6002 1.0596 45 1 3.6650 -2.2898 1.0390 46 1 2.9888 0.8496 2.2396 47 1 1.2807 0.5660 2.6521 48 1 4.2070 -2.1699 3.2159 49 1 4.6533 -0.4492 2.8460 50 1 4.6271 -2.5460 5.9694 51 1 7.3766 -2.7290 5.6906 52 1 3.3429 1.1265 4.4329 53 1 2.2962 0.1281 5.5300 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001459995489.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:07 Heat of formation + Delta-G solvation = -114.829197 kcal Electronic energy + Delta-G solvation = -31775.940607 eV Core-core repulsion = 27647.998981 eV Total energy + Delta-G solvation = -4127.941626 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.02517 -41.21065 -39.76453 -37.80568 -36.31787 -35.21704 -34.12524 -33.95808 -32.14469 -29.51496 -28.41398 -28.31622 -27.67012 -27.40106 -26.50860 -24.92746 -22.99142 -22.13253 -21.23551 -20.53164 -20.35323 -19.21934 -18.94461 -17.87352 -17.47882 -17.14233 -16.79769 -16.60595 -16.08362 -15.91884 -15.70195 -15.44937 -15.07987 -14.93090 -14.62922 -14.53277 -14.40353 -13.81794 -13.68557 -13.63698 -13.39706 -13.32559 -13.28131 -13.13226 -12.93804 -12.90747 -12.88526 -12.69927 -12.61422 -12.55603 -12.41725 -12.27960 -12.22993 -12.06567 -11.68148 -11.60466 -11.46333 -11.43839 -11.16083 -11.11231 -10.64415 -10.05387 -9.88279 -9.66430 -8.27443 -6.44667 0.97491 1.38005 1.40379 1.51630 1.66477 2.34486 2.83813 2.93941 3.14136 3.44900 3.47217 3.69538 3.72534 3.76313 3.91393 4.01778 4.11707 4.19222 4.23238 4.32859 4.41301 4.46438 4.48460 4.54251 4.57048 4.60157 4.60803 4.67195 4.72022 4.77270 4.78222 4.80036 4.85560 4.86628 4.94691 5.02794 5.07789 5.12285 5.16262 5.18608 5.24387 5.31571 5.32321 5.39042 5.40221 5.44119 5.51368 5.74204 5.95156 6.33496 6.36298 6.61467 7.18803 7.28524 7.54593 8.77626 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010167 B = 0.003435 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.409703 B = 8149.827376 C =10218.754837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.087 4.087 3 H 0.091 0.909 4 C 0.107 3.893 5 N -0.607 5.607 6 C 0.658 3.342 7 O -0.599 6.599 8 O -0.359 6.359 9 C 0.123 3.877 10 C -0.181 4.181 11 C -0.131 4.131 12 C -0.181 4.181 13 C 0.134 3.866 14 C -0.077 4.077 15 H 0.095 0.905 16 C 0.030 3.970 17 N -0.471 5.471 18 C -0.003 4.003 19 C 0.214 3.786 20 O -0.582 6.582 21 C -0.556 4.556 22 H 0.066 0.934 23 C 0.024 3.976 24 N -0.920 5.920 25 Si 0.966 3.034 26 H -0.264 1.264 27 H -0.275 1.275 28 H -0.282 1.282 29 C 0.015 3.985 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.051 0.949 38 H 0.072 0.928 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.051 0.949 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.050 0.950 45 H 0.044 0.956 46 H 0.037 0.963 47 H 0.102 0.898 48 H 0.042 0.958 49 H 0.053 0.947 50 H 0.383 0.617 51 H 0.273 0.727 52 H 0.078 0.922 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.180 4.258 -21.773 24.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.107 4.107 3 H 0.109 0.891 4 C -0.014 4.014 5 N -0.347 5.347 6 C 0.413 3.587 7 O -0.490 6.490 8 O -0.273 6.273 9 C 0.087 3.913 10 C -0.238 4.238 11 C -0.187 4.187 12 C -0.238 4.238 13 C 0.012 3.988 14 C -0.096 4.096 15 H 0.114 0.886 16 C -0.099 4.099 17 N -0.193 5.193 18 C -0.133 4.133 19 C 0.173 3.827 20 O -0.394 6.394 21 C -0.594 4.594 22 H 0.085 0.915 23 C -0.175 4.175 24 N -0.561 5.561 25 Si 0.790 3.210 26 H -0.188 1.188 27 H -0.200 1.200 28 H -0.208 1.208 29 C -0.113 4.113 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.122 0.878 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.112 0.888 43 H 0.083 0.917 44 H 0.068 0.932 45 H 0.063 0.937 46 H 0.055 0.945 47 H 0.121 0.879 48 H 0.061 0.939 49 H 0.071 0.929 50 H 0.237 0.763 51 H 0.083 0.917 52 H 0.096 0.904 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.785 3.740 -21.713 24.108 hybrid contribution 2.583 0.221 0.520 2.644 sum -7.202 3.961 -21.193 22.731 Atomic orbital electron populations 1.21671 0.91041 1.02973 1.03379 1.22401 0.98112 0.98815 0.91361 0.89118 1.22657 0.80926 0.99272 0.98550 1.47321 1.12509 1.68894 1.05995 1.17741 0.82590 0.77014 0.81354 1.90934 1.26958 1.53779 1.77349 1.86296 1.43950 1.82208 1.14885 1.22473 0.83173 0.94940 0.90727 1.22484 1.03037 0.94987 1.03341 1.21862 1.03961 1.03882 0.89044 1.22483 0.98577 0.99493 1.03281 1.22085 0.99325 1.00479 0.76909 1.22211 0.93675 0.99410 0.94301 0.88650 1.22702 1.01873 0.94599 0.90690 1.68867 1.18620 1.27240 1.04569 1.24411 0.88854 0.98760 1.01285 1.19790 0.91555 0.84894 0.86433 1.85998 1.42849 1.39869 1.70664 1.21896 0.95220 0.94064 1.48207 0.91534 1.25833 1.02414 0.95523 0.93735 1.69382 1.31079 1.05867 1.49776 0.85391 0.78624 0.79042 0.77902 1.18826 1.20032 1.20816 1.23942 0.97034 0.95932 0.94435 0.91956 0.91390 0.90305 0.89854 0.88733 0.91679 0.88811 0.93003 0.90866 0.87837 0.90884 0.93028 0.88824 0.91672 0.93198 0.93723 0.94517 0.87942 0.93925 0.92864 0.76288 0.91717 0.90432 0.90682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 9.29 71.98 0.67 -1.04 16 2 C -0.09 -1.61 3.09 -9.40 -0.03 -1.64 16 3 H 0.09 1.64 8.05 -2.39 -0.02 1.62 16 4 C 0.11 2.16 6.39 86.86 0.56 2.71 16 5 N -0.61 -18.11 3.33 -942.11 -3.13 -21.24 16 6 C 0.66 21.92 7.93 129.79 1.03 22.95 16 7 O -0.60 -24.38 12.21 19.81 0.24 -24.13 16 8 O -0.36 -9.64 9.42 -55.45 -0.52 -10.16 16 9 C 0.12 2.69 1.13 -10.79 -0.01 2.68 16 10 C -0.18 -4.13 8.37 71.98 0.60 -3.53 16 11 C -0.13 -1.72 8.85 71.98 0.64 -1.08 16 12 C -0.18 -4.14 8.37 71.98 0.60 -3.54 16 13 C 0.13 4.50 4.90 86.73 0.42 4.92 16 14 C -0.08 -2.03 2.62 -9.61 -0.03 -2.05 16 15 H 0.10 2.56 8.01 -2.39 -0.02 2.54 16 16 C 0.03 0.90 4.47 86.30 0.39 1.29 16 17 N -0.47 -18.80 6.41 -928.32 -5.95 -24.75 16 18 C 0.00 -0.16 5.16 83.58 0.43 0.27 16 19 C 0.21 11.13 1.57 -11.20 -0.02 11.11 16 20 O -0.58 -32.75 13.54 -148.98 -2.02 -34.77 16 21 C -0.56 -30.40 8.69 25.60 0.22 -30.18 16 22 H 0.07 3.53 7.81 -2.91 -0.02 3.51 16 23 C 0.02 1.33 5.40 84.65 0.46 1.79 16 24 N -0.92 -51.75 11.02 21.45 0.24 -51.52 16 25 Si 0.97 43.15 29.54 68.60 2.03 45.17 16 26 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 28 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 29 C 0.02 0.65 7.12 83.57 0.60 1.25 16 30 H 0.06 0.80 8.11 -2.39 -0.02 0.78 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.08 1.48 8.04 -2.39 -0.02 1.46 16 34 H 0.09 1.62 8.04 -2.38 -0.02 1.60 16 35 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.05 1.61 5.88 -2.39 -0.01 1.59 16 38 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 41 H 0.05 1.61 5.88 -2.38 -0.01 1.59 16 42 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.05 1.94 5.87 -2.39 -0.01 1.92 16 45 H 0.04 1.74 7.65 -2.39 -0.02 1.72 16 46 H 0.04 1.14 7.35 -2.39 -0.02 1.12 16 47 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 48 H 0.04 2.21 7.71 -2.39 -0.02 2.19 16 49 H 0.05 2.56 6.10 -2.39 -0.01 2.55 16 50 H 0.38 22.27 6.33 -74.06 -0.47 21.80 16 51 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 52 H 0.08 3.05 7.72 -2.39 -0.02 3.03 16 53 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -68.66 406.55 -2.18 -70.83 By element: Atomic # 1 Polarization: 44.26 SS G_CDS: 0.42 Total: 44.68 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: 6.53 Total: 5.89 kcal Atomic # 7 Polarization: -88.66 SS G_CDS: -8.85 Total: -97.51 kcal Atomic # 8 Polarization: -66.77 SS G_CDS: -2.30 Total: -69.06 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -68.66 -2.18 -70.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459995489.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.997 kcal (2) G-P(sol) polarization free energy of solvation -68.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds