Wall clock time and date at job start Wed Apr 1 2020 00:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.38729 * 2 1 4 4 C 1.54384 * 110.34283 * 122.23054 * 2 1 3 5 5 N 1.48143 * 104.62065 * 142.73967 * 4 2 1 6 6 C 1.34769 * 127.84170 * 140.39360 * 5 4 2 7 7 O 1.21288 * 120.00282 * 180.02562 * 6 5 4 8 8 C 1.50705 * 119.99985 * 0.02562 * 6 5 4 9 9 C 1.52998 * 109.47263 * 180.02562 * 8 6 5 10 10 O 1.42896 * 109.47322 * 179.97438 * 9 8 6 11 11 C 1.42898 * 114.00024 * 179.97438 * 10 9 8 12 12 C 1.53180 * 109.54414 * 269.82260 * 11 10 9 13 13 C 1.53105 * 109.15798 * 183.24004 * 12 11 10 14 14 O 1.42908 * 109.48459 * 57.47857 * 13 12 11 15 15 C 1.42907 * 114.09446 * 298.88746 * 14 13 12 16 16 C 1.53089 * 109.41356 * 61.15977 * 15 14 13 17 17 C 1.48151 * 104.32040 * 320.41512 * 5 4 2 18 18 C 1.54281 * 110.34372 * 237.76803 * 2 1 3 19 19 H 1.09005 * 110.34282 * 122.14983 * 18 2 1 20 20 C 1.53004 * 110.34432 * 359.97438 * 18 2 1 21 21 N 1.46499 * 109.47198 * 175.00023 * 20 18 2 22 22 C 1.36939 * 119.99933 * 180.27608 * 21 20 18 23 23 H 1.08001 * 119.99700 * 359.72658 * 22 21 20 24 24 C 1.38810 * 120.00095 * 179.71972 * 22 21 20 25 25 N 1.31624 * 119.99740 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00044 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47201 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47080 * 120.00466 * 26 24 22 29 29 H 1.48506 * 109.47018 * 240.00565 * 26 24 22 30 30 H 1.09002 * 109.46810 * 182.22987 * 1 2 3 31 31 H 1.09001 * 109.46892 * 302.23152 * 1 2 3 32 32 H 1.09001 * 109.47136 * 62.23259 * 1 2 3 33 33 H 1.09008 * 110.40676 * 261.52406 * 4 2 1 34 34 H 1.09001 * 110.40797 * 23.95001 * 4 2 1 35 35 H 1.08998 * 109.47260 * 300.00375 * 8 6 5 36 36 H 1.08998 * 109.47196 * 60.00402 * 8 6 5 37 37 H 1.08998 * 109.47207 * 300.00308 * 9 8 6 38 38 H 1.09006 * 109.47108 * 59.99978 * 9 8 6 39 39 H 1.08996 * 109.54692 * 30.00325 * 11 10 9 40 40 H 1.08997 * 109.52368 * 303.06008 * 12 11 10 41 41 H 1.09001 * 109.52255 * 63.24836 * 12 11 10 42 42 H 1.08996 * 109.40653 * 297.49629 * 13 12 11 43 43 H 1.08995 * 109.49188 * 177.50903 * 13 12 11 44 44 H 1.09001 * 109.48079 * 301.17310 * 15 14 13 45 45 H 1.08999 * 109.48526 * 181.14573 * 15 14 13 46 46 H 1.09000 * 109.52080 * 182.48177 * 16 15 14 47 47 H 1.09002 * 109.52340 * 62.29769 * 16 15 14 48 48 H 1.08998 * 110.40618 * 280.80042 * 17 5 4 49 49 H 1.08998 * 110.40357 * 158.37108 * 17 5 4 50 50 H 1.09009 * 109.46730 * 54.99810 * 20 18 2 51 51 H 1.08998 * 109.46846 * 295.00355 * 20 18 2 52 52 H 0.97001 * 119.99790 * 359.97438 * 21 20 18 53 53 H 0.96998 * 119.99409 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0218 0.0000 4 6 2.0667 -0.7720 1.2245 5 7 3.2665 -1.4816 0.7227 6 6 4.4425 -1.6660 1.3545 7 8 5.3370 -2.2740 0.8056 8 6 4.6463 -1.1166 2.7429 9 6 6.0564 -1.4616 3.2261 10 8 6.2498 -0.9402 4.5424 11 6 7.5420 -1.2093 5.0901 12 6 7.5092 -2.5378 5.8518 13 6 8.8742 -2.7778 6.5024 14 8 9.1905 -1.6828 7.3645 15 6 9.2820 -0.4225 6.6972 16 6 7.9328 -0.0868 6.0563 17 6 2.8802 -1.9422 -0.6314 18 6 2.0664 -0.7715 -1.2237 19 1 2.7081 -0.1282 -1.8258 20 6 0.9062 -1.3041 -2.0671 21 7 1.4329 -1.9285 -3.2832 22 6 0.5742 -2.4744 -4.1996 23 1 -0.4911 -2.4486 -4.0236 24 6 1.0729 -3.0610 -5.3546 25 7 2.3712 -3.0928 -5.5688 26 14 -0.0985 -3.8063 -6.6043 27 1 -1.4966 -3.6427 -6.1314 28 1 0.0660 -3.1171 -7.9094 29 1 0.2040 -5.2512 -6.7660 30 1 -0.3633 -1.0269 0.0400 31 1 -0.3633 0.5481 0.8693 32 1 -0.3633 0.4788 -0.9093 33 1 2.3401 -0.0794 2.0206 34 1 1.3235 -1.4860 1.5793 35 1 4.5228 -0.0338 2.7270 36 1 3.9127 -1.5561 3.4188 37 1 6.1803 -2.5444 3.2419 38 1 6.7898 -1.0219 2.5501 39 1 8.2742 -1.2686 4.2849 40 1 6.7413 -2.4960 6.6242 41 1 7.2866 -3.3495 5.1591 42 1 9.6354 -2.8614 5.7268 43 1 8.8435 -3.7000 7.0825 44 1 10.0486 -0.4753 5.9241 45 1 9.5450 0.3521 7.4176 46 1 8.0129 0.8528 5.5098 47 1 7.1737 0.0061 6.8330 48 1 2.2640 -2.8389 -0.5664 49 1 3.7673 -2.1324 -1.2354 50 1 0.2461 -0.4801 -2.3383 51 1 0.3480 -2.0427 -1.4918 52 1 2.3897 -1.9514 -3.4413 53 1 2.7196 -3.5030 -6.3757 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484380098.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:55 Heat of formation + Delta-G solvation = -146.536803 kcal Electronic energy + Delta-G solvation = -29690.834724 eV Core-core repulsion = 25561.518153 eV Total energy + Delta-G solvation = -4129.316571 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.33397 -40.59831 -39.42786 -38.41389 -36.41678 -34.42658 -33.99782 -32.84028 -32.16128 -32.10705 -30.40761 -27.79125 -26.79686 -25.73562 -25.02054 -24.62435 -23.96063 -23.30733 -21.43687 -20.27891 -20.17548 -19.00022 -18.54149 -17.75473 -17.40561 -17.12622 -16.98259 -16.70895 -16.52809 -16.26311 -16.09214 -15.82198 -15.35338 -15.30492 -15.09021 -14.81702 -14.73109 -14.21900 -14.20115 -13.79320 -13.50625 -13.39068 -13.21043 -13.06948 -12.95890 -12.84978 -12.81442 -12.76304 -12.66716 -12.34600 -12.13184 -12.09949 -11.83474 -11.83038 -11.68781 -11.50937 -11.38519 -11.27436 -11.02943 -10.89433 -10.69937 -10.53944 -9.83626 -8.98487 -7.95122 -5.24080 1.46599 1.47601 1.50769 1.57721 1.72333 2.55508 2.58274 2.93063 3.37978 3.42583 3.59755 3.68707 3.71111 3.75924 3.83731 3.94698 3.98716 4.00568 4.09600 4.17174 4.24266 4.26146 4.33227 4.43191 4.43885 4.49691 4.56503 4.59266 4.66871 4.67323 4.73328 4.73894 4.76595 4.81641 4.83542 4.86141 4.91266 4.97702 5.02362 5.09456 5.17465 5.18947 5.22281 5.27268 5.44266 5.51155 5.58317 6.11979 6.19570 6.27076 6.52056 7.02562 7.32661 8.09919 8.30986 9.28883 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021512 B = 0.001725 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.313080 B =16226.182537 C =17140.388692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 H 0.096 0.904 4 C 0.103 3.897 5 N -0.621 5.621 6 C 0.529 3.471 7 O -0.595 6.595 8 C -0.119 4.119 9 C 0.081 3.919 10 O -0.386 6.386 11 C 0.082 3.918 12 C -0.177 4.177 13 C 0.062 3.938 14 O -0.401 6.401 15 C 0.060 3.940 16 C -0.148 4.148 17 C 0.119 3.881 18 C -0.098 4.098 19 H 0.064 0.936 20 C 0.163 3.837 21 N -0.750 5.750 22 C -0.240 4.240 23 H 0.080 0.920 24 C -0.081 4.081 25 N -0.973 5.973 26 Si 0.974 3.026 27 H -0.262 1.262 28 H -0.294 1.294 29 H -0.296 1.296 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.047 0.953 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.108 0.892 44 H 0.061 0.939 45 H 0.116 0.884 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.065 0.935 49 H 0.045 0.955 50 H 0.036 0.964 51 H 0.030 0.970 52 H 0.370 0.630 53 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.900 9.198 29.086 31.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.114 0.886 4 C -0.018 4.018 5 N -0.354 5.354 6 C 0.320 3.680 7 O -0.476 6.476 8 C -0.159 4.159 9 C 0.004 3.996 10 O -0.306 6.306 11 C 0.025 3.975 12 C -0.215 4.215 13 C -0.015 4.015 14 O -0.320 6.320 15 C -0.016 4.016 16 C -0.186 4.186 17 C -0.004 4.004 18 C -0.118 4.118 19 H 0.082 0.918 20 C 0.038 3.962 21 N -0.392 5.392 22 C -0.371 4.371 23 H 0.098 0.902 24 C -0.273 4.273 25 N -0.624 5.624 26 Si 0.803 3.197 27 H -0.186 1.186 28 H -0.222 1.222 29 H -0.224 1.224 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.134 0.866 34 H 0.107 0.893 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.126 0.874 44 H 0.079 0.921 45 H 0.134 0.866 46 H 0.108 0.892 47 H 0.094 0.906 48 H 0.083 0.917 49 H 0.064 0.936 50 H 0.054 0.946 51 H 0.047 0.953 52 H 0.201 0.799 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.156 8.908 29.123 31.284 hybrid contribution 0.165 -0.977 -2.052 2.279 sum 7.320 7.931 27.071 29.143 Atomic orbital electron populations 1.21875 0.92752 1.02564 1.02883 1.22072 0.97388 0.99469 0.91929 0.88573 1.22842 0.85606 0.96159 0.97199 1.49116 1.13749 1.55355 1.17154 1.20738 0.79929 0.79017 0.88341 1.90721 1.42966 1.44533 1.69380 1.21374 0.98534 1.04811 0.91141 1.22058 0.96122 0.98034 0.83399 1.87822 1.34071 1.78284 1.30422 1.22264 0.84710 0.95144 0.95429 1.22708 0.99673 0.98186 1.00915 1.22651 0.94249 0.90273 0.94309 1.87923 1.91001 1.16824 1.36300 1.22743 0.95126 0.85886 0.97853 1.22278 0.98852 0.98516 0.98951 1.22161 0.97913 0.97250 0.83056 1.22194 0.96669 0.96023 0.96921 0.91777 1.21031 0.94182 0.94965 0.86071 1.42713 1.05946 1.69403 1.21174 1.19701 0.90680 1.28212 0.98556 0.90171 1.25616 0.97367 1.03317 1.00981 1.69849 1.12544 1.51799 1.28200 0.85055 0.78735 0.77155 0.78722 1.18591 1.22181 1.22370 0.92537 0.89840 0.92512 0.86586 0.89285 0.85676 0.85848 0.93462 0.93356 0.91776 0.90714 0.90590 0.92236 0.87373 0.92053 0.86636 0.89189 0.90642 0.91721 0.93619 0.94609 0.95266 0.79899 0.94176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 7.94 71.98 0.57 -1.95 16 2 C -0.09 -1.76 3.66 -9.89 -0.04 -1.80 16 3 H 0.10 1.64 8.14 -2.39 -0.02 1.63 16 4 C 0.10 1.74 6.46 86.53 0.56 2.30 16 5 N -0.62 -16.26 3.32 -807.96 -2.68 -18.94 16 6 C 0.53 14.62 7.91 87.66 0.69 15.31 16 7 O -0.59 -22.45 16.25 -3.05 -0.05 -22.50 16 8 C -0.12 -2.11 5.05 29.85 0.15 -1.96 16 9 C 0.08 1.62 5.04 71.98 0.36 1.99 16 10 O -0.39 -7.15 10.00 -148.98 -1.49 -8.64 16 11 C 0.08 1.27 2.69 30.71 0.08 1.35 16 12 C -0.18 -2.56 5.77 30.69 0.18 -2.38 16 13 C 0.06 0.78 6.84 72.02 0.49 1.28 16 14 O -0.40 -6.25 10.77 -148.98 -1.60 -7.85 16 15 C 0.06 0.66 6.84 72.01 0.49 1.15 16 16 C -0.15 -1.84 5.79 30.68 0.18 -1.66 16 17 C 0.12 4.03 6.41 86.53 0.55 4.58 16 18 C -0.10 -3.03 3.10 -9.89 -0.03 -3.06 16 19 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 20 C 0.16 6.14 4.40 86.38 0.38 6.52 16 21 N -0.75 -38.15 5.48 -343.44 -1.88 -40.03 16 22 C -0.24 -13.38 9.99 84.03 0.84 -12.54 16 23 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 24 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 25 N -0.97 -61.16 13.06 21.65 0.28 -60.88 16 26 Si 0.97 46.63 29.55 68.60 2.03 48.66 16 27 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 28 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 29 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 30 H 0.06 1.09 6.90 -2.39 -0.02 1.07 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 1.15 6.67 -2.39 -0.02 1.13 16 33 H 0.12 1.14 7.30 -2.38 -0.02 1.12 16 34 H 0.09 1.33 7.83 -2.39 -0.02 1.31 16 35 H 0.13 1.65 7.95 -2.39 -0.02 1.63 16 36 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.05 1.04 7.93 -2.39 -0.02 1.02 16 38 H 0.05 1.06 8.04 -2.38 -0.02 1.04 16 39 H 0.06 0.97 7.79 -2.39 -0.02 0.96 16 40 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.08 1.10 7.97 -2.39 -0.02 1.08 16 42 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.11 1.10 8.14 -2.39 -0.02 1.09 16 44 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.06 2.32 7.75 -2.39 -0.02 2.30 16 49 H 0.05 1.87 7.88 -2.39 -0.02 1.85 16 50 H 0.04 1.31 6.49 -2.38 -0.02 1.30 16 51 H 0.03 1.08 6.93 -2.39 -0.02 1.07 16 52 H 0.37 20.55 7.61 -92.71 -0.71 19.84 16 53 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -75.85 413.89 0.72 -75.13 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: 0.18 Total: 30.16 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 5.93 Total: 4.89 kcal Atomic # 7 Polarization: -115.57 SS G_CDS: -4.28 Total: -119.85 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -3.14 Total: -39.00 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -75.85 0.72 -75.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484380098.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.404 kcal (2) G-P(sol) polarization free energy of solvation -75.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds