Wall clock time and date at job start Tue Mar 31 2020 23:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00044 * 2 1 4 4 C 1.52997 * 109.47200 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.61796 * 300.22360 * 4 3 2 6 6 O 1.21284 * 120.00197 * 239.77454 * 5 4 3 7 7 N 1.34778 * 119.99809 * 59.77719 * 5 4 3 8 8 C 1.46497 * 120.00063 * 179.97438 * 7 5 4 9 9 H 1.08996 * 109.46013 * 34.97483 * 8 7 5 10 10 C 1.53042 * 109.46333 * 275.00006 * 8 7 5 11 11 C 1.53190 * 109.31577 * 178.61037 * 10 8 7 12 12 N 1.46934 * 108.77017 * 54.63607 * 11 10 8 13 13 C 1.36939 * 120.62558 * 126.41140 * 12 11 10 14 14 H 1.07997 * 120.00245 * 207.67123 * 13 12 11 15 15 C 1.38822 * 120.00232 * 27.68111 * 13 12 11 16 16 N 1.31622 * 119.99541 * 17.35109 * 15 13 12 17 17 Si 1.86795 * 119.99800 * 197.35320 * 15 13 12 18 18 H 1.48492 * 109.47128 * 89.99986 * 17 15 13 19 19 H 1.48502 * 109.46567 * 209.99883 * 17 15 13 20 20 H 1.48496 * 109.47280 * 329.99268 * 17 15 13 21 21 C 1.46920 * 118.74256 * 306.38966 * 12 11 10 22 22 H 1.08993 * 109.58839 * 173.54021 * 21 12 11 23 23 C 1.53003 * 109.58824 * 293.82508 * 21 12 11 24 24 C 1.53046 * 109.46197 * 154.93290 * 8 7 5 25 25 C 1.53180 * 109.54305 * 180.02562 * 4 3 2 26 26 C 1.53102 * 109.21437 * 183.12237 * 25 4 3 27 27 O 1.43032 * 109.33991 * 57.57787 * 26 25 4 28 28 C 1.42903 * 114.13702 * 298.87832 * 27 26 25 29 29 C 1.53095 * 109.41387 * 61.16290 * 28 27 26 30 30 H 1.08996 * 109.47017 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46932 * 299.99770 * 1 2 3 32 32 H 1.08995 * 109.47309 * 59.99667 * 1 2 3 33 33 H 1.09007 * 109.46680 * 60.00380 * 3 2 1 34 34 H 1.08998 * 109.47651 * 300.00374 * 3 2 1 35 35 H 0.96997 * 119.99926 * 0.02562 * 7 5 4 36 36 H 1.08999 * 109.49754 * 298.56943 * 10 8 7 37 37 H 1.09004 * 109.49523 * 58.62896 * 10 8 7 38 38 H 1.08996 * 109.58945 * 174.42262 * 11 10 8 39 39 H 1.09000 * 109.59147 * 294.85233 * 11 10 8 40 40 H 0.97005 * 119.99532 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.47010 * 59.99248 * 23 21 12 42 42 H 1.08991 * 109.47053 * 179.97438 * 23 21 12 43 43 H 1.09002 * 109.46743 * 299.99693 * 23 21 12 44 44 H 1.08998 * 109.49155 * 301.34101 * 24 8 7 45 45 H 1.09003 * 109.49438 * 61.43320 * 24 8 7 46 46 H 1.08995 * 109.52177 * 303.06033 * 25 4 3 47 47 H 1.09003 * 109.52592 * 63.18696 * 25 4 3 48 48 H 1.08993 * 109.47990 * 177.62172 * 26 25 4 49 49 H 1.08997 * 109.48153 * 297.65780 * 26 25 4 50 50 H 1.09003 * 109.48222 * 301.18250 * 28 27 26 51 51 H 1.08999 * 109.48280 * 181.14851 * 28 27 26 52 52 H 1.08993 * 109.52255 * 182.48806 * 29 28 27 53 53 H 1.09001 * 109.57200 * 62.32728 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9829 0.4326 1.2275 6 8 4.7283 0.9615 2.0248 7 7 3.5547 -0.8278 1.4388 8 6 3.9901 -1.5591 2.6311 9 1 4.0869 -0.8662 3.4669 10 6 5.3429 -2.2206 2.3580 11 6 5.8113 -2.9553 3.6179 12 7 4.7577 -3.8883 4.0404 13 6 5.0388 -5.2134 4.2413 14 1 4.2653 -5.9555 4.1094 15 6 6.3178 -5.6028 4.6148 16 7 7.1590 -4.7165 5.1039 17 14 6.8449 -7.3846 4.4231 18 1 7.4459 -7.5812 3.0796 19 1 7.8463 -7.7195 5.4673 20 1 5.6615 -8.2695 4.5704 21 6 3.3971 -3.3724 4.2437 22 1 2.7176 -4.2015 4.4408 23 6 3.3865 -2.4072 5.4308 24 6 2.9559 -2.6329 2.9767 25 6 4.1602 2.5833 0.0013 26 6 5.6838 2.4545 -0.0768 27 8 6.0374 1.7195 -1.2517 28 6 5.5205 0.3876 -1.2855 29 6 3.9905 0.4347 -1.2551 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.6886 1.8463 0.8901 34 1 1.6886 1.8465 -0.8899 35 1 2.9589 -1.2509 0.8010 36 1 5.2411 -2.9320 1.5385 37 1 6.0732 -1.4575 2.0886 38 1 6.7241 -3.5095 3.3997 39 1 6.0006 -2.2338 4.4127 40 1 8.0529 -4.9886 5.3645 41 1 4.0628 -1.5764 5.2296 42 1 2.3766 -2.0254 5.5796 43 1 3.7129 -2.9321 6.3287 44 1 1.9873 -2.1633 3.1482 45 1 2.8765 -3.3405 2.1514 46 1 3.7974 3.1446 -0.8597 47 1 3.8853 3.1047 0.9182 48 1 6.1308 3.4477 -0.1192 49 1 6.0498 1.9283 0.8048 50 1 5.8844 -0.1656 -0.4197 51 1 5.8508 -0.1075 -2.1986 52 1 3.5952 -0.5808 -1.2362 53 1 3.6234 0.9521 -2.1414 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484980170.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:12 Heat of formation + Delta-G solvation = -134.892687 kcal Electronic energy + Delta-G solvation = -32904.442257 eV Core-core repulsion = 28775.630612 eV Total energy + Delta-G solvation = -4128.811644 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.04577 -40.03090 -38.80837 -38.65113 -35.99897 -35.21404 -34.26072 -32.49872 -32.07211 -31.17211 -29.17273 -28.51354 -26.91954 -26.26131 -24.81122 -24.49459 -23.67542 -23.45704 -22.34317 -20.79443 -19.80074 -18.69926 -17.87755 -17.57338 -17.42591 -17.05968 -16.86771 -16.67428 -16.39707 -16.02916 -15.71483 -15.58662 -15.51607 -15.22124 -14.96199 -14.72935 -14.50906 -14.25806 -14.11075 -13.89028 -13.37649 -13.29623 -13.16313 -13.15432 -12.92922 -12.85386 -12.67435 -12.55616 -12.36115 -12.28458 -12.21703 -12.02712 -11.99135 -11.77806 -11.64199 -11.54762 -11.41982 -11.11887 -10.76513 -10.56400 -10.55126 -10.30612 -9.88201 -8.69165 -7.85543 -5.30570 1.47151 1.48761 1.57289 1.65155 2.22879 2.51940 2.69365 2.92776 3.29854 3.53943 3.55916 3.63110 3.80424 3.83116 3.99464 4.05771 4.10179 4.24935 4.30015 4.36971 4.43303 4.43849 4.50437 4.57474 4.62599 4.63278 4.67528 4.69300 4.71717 4.76366 4.79324 4.83118 4.85669 4.90502 4.98578 5.03780 5.05889 5.08821 5.11942 5.14484 5.20987 5.32648 5.43250 5.50732 5.66951 5.68813 5.74650 6.17649 6.20430 6.40602 6.70952 7.15580 7.37787 7.87580 8.40171 9.21014 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014295 B = 0.003413 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.319140 B = 8200.905037 C = 9053.772774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.406 6.406 3 C 0.080 3.920 4 C -0.075 4.075 5 C 0.517 3.483 6 O -0.582 6.582 7 N -0.699 5.699 8 C 0.162 3.838 9 H 0.060 0.940 10 C -0.129 4.129 11 C 0.187 3.813 12 N -0.598 5.598 13 C -0.258 4.258 14 H 0.072 0.928 15 C -0.051 4.051 16 N -0.936 5.936 17 Si 0.965 3.035 18 H -0.287 1.287 19 H -0.299 1.299 20 H -0.265 1.265 21 C 0.161 3.839 22 H 0.070 0.930 23 C -0.152 4.152 24 C -0.114 4.114 25 C -0.122 4.122 26 C 0.047 3.953 27 O -0.395 6.395 28 C 0.052 3.948 29 C -0.129 4.129 30 H 0.095 0.905 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.091 0.909 35 H 0.414 0.586 36 H 0.057 0.943 37 H 0.038 0.962 38 H 0.052 0.948 39 H -0.011 1.011 40 H 0.247 0.753 41 H 0.032 0.968 42 H 0.074 0.926 43 H 0.029 0.971 44 H 0.087 0.913 45 H 0.069 0.931 46 H 0.106 0.894 47 H 0.079 0.921 48 H 0.108 0.892 49 H 0.044 0.956 50 H 0.022 0.978 51 H 0.114 0.886 52 H 0.089 0.911 53 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.499 14.084 -15.833 26.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.326 6.326 3 C 0.003 3.997 4 C -0.078 4.078 5 C 0.304 3.696 6 O -0.463 6.463 7 N -0.351 5.351 8 C 0.057 3.943 9 H 0.078 0.922 10 C -0.169 4.169 11 C 0.060 3.940 12 N -0.320 5.320 13 C -0.388 4.388 14 H 0.090 0.910 15 C -0.247 4.247 16 N -0.583 5.583 17 Si 0.794 3.206 18 H -0.214 1.214 19 H -0.226 1.226 20 H -0.189 1.189 21 C 0.054 3.946 22 H 0.088 0.912 23 C -0.211 4.211 24 C -0.153 4.153 25 C -0.159 4.159 26 C -0.029 4.029 27 O -0.314 6.314 28 C -0.025 4.025 29 C -0.167 4.167 30 H 0.114 0.886 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.253 0.747 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.007 0.993 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.092 0.908 43 H 0.048 0.952 44 H 0.106 0.894 45 H 0.088 0.912 46 H 0.124 0.876 47 H 0.097 0.903 48 H 0.126 0.874 49 H 0.063 0.937 50 H 0.040 0.960 51 H 0.132 0.868 52 H 0.108 0.892 53 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.642 14.294 -15.354 25.582 hybrid contribution 0.550 -1.025 0.666 1.340 sum -14.092 13.269 -14.687 24.298 Atomic orbital electron populations 1.22891 0.78929 1.03908 1.00829 1.87686 1.21704 1.27607 1.95580 1.22471 0.89282 0.85518 1.02405 1.21014 0.96535 0.96935 0.93321 1.20919 0.79505 0.81912 0.87281 1.90650 1.37847 1.69157 1.48644 1.46180 1.49465 1.14063 1.25373 1.20672 0.93630 0.92659 0.87340 0.92219 1.22297 0.96986 0.98202 0.99425 1.20387 0.92200 0.90363 0.91035 1.44353 1.04958 1.05150 1.77571 1.19557 0.96244 0.84021 1.39004 0.90993 1.25796 0.98748 1.01092 0.99019 1.70217 1.07053 1.35097 1.45899 0.85292 0.77867 0.80694 0.76769 1.21424 1.22589 1.18944 1.20709 0.86627 0.94818 0.92483 0.91162 1.22175 1.00816 0.99236 0.98884 1.22079 0.97680 0.96720 0.98861 1.21951 0.95745 0.93908 1.04342 1.22848 0.95092 0.97337 0.87655 1.87886 1.75400 1.25985 1.42163 1.22708 0.93890 0.83807 1.02091 1.22168 0.95570 1.02264 0.96659 0.88608 0.93905 0.92365 0.92846 0.89135 0.74695 0.92454 0.94276 0.92968 0.99273 0.94348 0.94853 0.90763 0.95216 0.89435 0.91218 0.87579 0.90281 0.87364 0.93731 0.96009 0.86788 0.89233 0.87562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -6.16 7.62 -148.98 -1.13 -7.30 16 3 C 0.08 1.15 4.81 71.98 0.35 1.49 16 4 C -0.07 -1.48 0.53 -52.81 -0.03 -1.50 16 5 C 0.52 14.95 5.12 87.66 0.45 15.40 16 6 O -0.58 -21.79 13.50 -3.04 -0.04 -21.83 16 7 N -0.70 -19.71 4.60 -442.40 -2.04 -21.74 16 8 C 0.16 5.67 2.21 45.02 0.10 5.77 16 9 H 0.06 2.41 5.92 -2.39 -0.01 2.40 16 10 C -0.13 -5.36 5.65 30.67 0.17 -5.19 16 11 C 0.19 9.54 4.90 86.36 0.42 9.97 16 12 N -0.60 -29.86 2.70 -675.22 -1.82 -31.69 16 13 C -0.26 -14.10 9.59 84.04 0.81 -13.30 16 14 H 0.07 3.77 7.89 -2.91 -0.02 3.75 16 15 C -0.05 -2.90 4.91 84.86 0.42 -2.48 16 16 N -0.94 -56.89 11.19 21.66 0.24 -56.65 16 17 Si 0.97 45.34 29.59 68.60 2.03 47.37 16 18 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 19 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 20 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 21 C 0.16 6.41 3.29 44.98 0.15 6.55 16 22 H 0.07 2.73 7.93 -2.39 -0.02 2.71 16 23 C -0.15 -5.87 9.03 71.98 0.65 -5.22 16 24 C -0.11 -3.64 5.02 30.67 0.15 -3.49 16 25 C -0.12 -2.29 4.56 30.69 0.14 -2.15 16 26 C 0.05 1.14 6.57 72.02 0.47 1.61 16 27 O -0.40 -10.06 10.77 -148.98 -1.60 -11.67 16 28 C 0.05 1.18 6.62 72.01 0.48 1.66 16 29 C -0.13 -2.26 4.67 30.69 0.14 -2.12 16 30 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.04 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.41 9.87 5.98 -92.71 -0.55 9.32 16 36 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.05 3.03 6.04 -2.39 -0.01 3.01 16 39 H -0.01 -0.61 7.50 -2.39 -0.02 -0.63 16 40 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 41 H 0.03 1.37 5.72 -2.39 -0.01 1.36 16 42 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.08 1.55 8.03 -2.39 -0.02 1.53 16 48 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 49 H 0.04 1.41 5.80 -2.39 -0.01 1.40 16 50 H 0.02 0.63 7.38 -2.39 -0.02 0.61 16 51 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 52 H 0.09 1.52 7.19 -2.39 -0.02 1.51 16 53 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -71.36 395.55 2.08 -69.28 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 0.33 Total: 25.69 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 6.12 Total: 8.55 kcal Atomic # 7 Polarization: -106.46 SS G_CDS: -3.62 Total: -110.08 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -2.78 Total: -40.80 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -71.36 2.08 -69.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484980170.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.611 kcal (2) G-P(sol) polarization free energy of solvation -71.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds