Wall clock time and date at job start Tue Mar 31 2020 23:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 114.00216 * 2 1 4 4 C 1.52996 * 109.47503 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.54638 * 300.00812 * 4 3 2 6 6 O 1.21277 * 119.99993 * 239.99813 * 5 4 3 7 7 N 1.34775 * 119.99855 * 59.99551 * 5 4 3 8 8 C 1.46505 * 119.99631 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.44865 * 34.96804 * 8 7 5 10 10 C 1.53042 * 109.45961 * 274.99546 * 8 7 5 11 11 C 1.53191 * 109.31086 * 178.61381 * 10 8 7 12 12 N 1.46922 * 108.77453 * 54.63972 * 11 10 8 13 13 C 1.36943 * 120.63171 * 126.36483 * 12 11 10 14 14 H 1.07997 * 120.00159 * 209.02328 * 13 12 11 15 15 C 1.38811 * 119.99723 * 29.02825 * 13 12 11 16 16 N 1.31622 * 119.99967 * 15.02106 * 15 13 12 17 17 Si 1.86800 * 120.00071 * 195.01449 * 15 13 12 18 18 H 1.48508 * 109.46781 * 90.00150 * 17 15 13 19 19 H 1.48500 * 109.47543 * 209.99997 * 17 15 13 20 20 H 1.48500 * 109.47074 * 330.00617 * 17 15 13 21 21 C 1.46924 * 118.74178 * 306.38930 * 12 11 10 22 22 H 1.09005 * 109.58295 * 293.68328 * 21 12 11 23 23 C 1.52995 * 109.59278 * 173.39666 * 21 12 11 24 24 C 1.53046 * 109.45819 * 154.93065 * 8 7 5 25 25 C 1.53186 * 109.54051 * 60.18186 * 4 3 2 26 26 C 1.53276 * 109.06375 * 176.85504 * 25 4 3 27 27 O 1.42904 * 109.45768 * 302.44392 * 26 25 4 28 28 C 1.42899 * 114.10140 * 61.16287 * 27 26 25 29 29 C 1.53093 * 109.41290 * 298.83917 * 28 27 26 30 30 H 1.09005 * 109.46742 * 299.99099 * 1 2 3 31 31 H 1.08998 * 109.47462 * 59.99075 * 1 2 3 32 32 H 1.08996 * 109.47115 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46226 * 60.00732 * 3 2 1 34 34 H 1.08996 * 109.47309 * 300.00969 * 3 2 1 35 35 H 0.96995 * 120.00661 * 359.97438 * 7 5 4 36 36 H 1.09000 * 109.49153 * 58.66606 * 10 8 7 37 37 H 1.08993 * 109.50182 * 298.57051 * 10 8 7 38 38 H 1.08998 * 109.58319 * 174.42465 * 11 10 8 39 39 H 1.08999 * 109.59202 * 294.84909 * 11 10 8 40 40 H 0.96998 * 119.99685 * 179.97438 * 16 15 13 41 41 H 1.09002 * 109.46907 * 59.99514 * 23 21 12 42 42 H 1.08996 * 109.47477 * 179.97438 * 23 21 12 43 43 H 1.09003 * 109.47124 * 300.00359 * 23 21 12 44 44 H 1.08996 * 109.49450 * 61.43213 * 24 8 7 45 45 H 1.08996 * 109.49922 * 301.33485 * 24 8 7 46 46 H 1.09000 * 109.51803 * 296.84292 * 25 4 3 47 47 H 1.09000 * 109.52149 * 57.02845 * 25 4 3 48 48 H 1.09000 * 109.45786 * 182.45246 * 26 25 4 49 49 H 1.09001 * 109.47235 * 62.44830 * 26 25 4 50 50 H 1.09002 * 109.48595 * 178.85697 * 28 27 26 51 51 H 1.09001 * 109.47997 * 58.81906 * 28 27 26 52 52 H 1.09001 * 109.52566 * 297.70532 * 29 28 27 53 53 H 1.09002 * 109.52619 * 177.50983 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9825 0.4366 1.2288 6 8 4.7250 0.9693 2.0262 7 7 3.5571 -0.8243 1.4423 8 6 3.9913 -1.5513 2.6378 9 1 4.0841 -0.8557 3.4719 10 6 5.3465 -2.2099 2.3699 11 6 5.8135 -2.9401 3.6331 12 7 4.7614 -3.8747 4.0552 13 6 5.0451 -5.1987 4.2596 14 1 4.2796 -5.9449 4.1064 15 6 6.3167 -5.5816 4.6637 16 7 7.1564 -4.6833 5.1333 17 14 6.8362 -7.3718 4.5413 18 1 7.4542 -7.6181 3.2136 19 1 7.8215 -7.6755 5.6099 20 1 5.6458 -8.2447 4.7028 21 6 3.3989 -3.3619 4.2535 22 1 3.3868 -2.6740 5.0990 23 6 2.4467 -4.5278 4.5273 24 6 2.9589 -2.6269 2.9834 25 6 3.9890 0.4289 -1.2535 26 6 5.5208 0.3828 -1.2832 27 8 6.0378 1.7147 -1.2543 28 6 5.6836 2.4528 -0.0831 29 6 4.1603 2.5833 -0.0051 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.6886 1.8462 0.8901 34 1 1.6885 1.8465 -0.8898 35 1 2.9630 -1.2502 0.8048 36 1 6.0756 -1.4455 2.1010 37 1 5.2488 -2.9238 1.5521 38 1 6.7284 -3.4924 3.4186 39 1 5.9989 -2.2160 4.4264 40 1 8.0448 -4.9510 5.4161 41 1 2.7688 -5.0570 5.4241 42 1 1.4368 -4.1452 4.6745 43 1 2.4565 -5.2118 3.6786 44 1 2.8837 -3.3369 2.1598 45 1 1.9887 -2.1595 3.1512 46 1 3.5923 -0.5861 -1.2301 47 1 3.6231 0.9436 -2.1419 48 1 5.8514 -0.1157 -2.1944 49 1 5.8847 -0.1673 -0.4154 50 1 6.1315 3.4455 -0.1296 51 1 6.0494 1.9299 0.8006 52 1 3.7977 3.1414 -0.8683 53 1 3.8859 3.1076 0.9103 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484980171.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:16 Heat of formation + Delta-G solvation = -134.967249 kcal Electronic energy + Delta-G solvation = -32770.459708 eV Core-core repulsion = 28641.644830 eV Total energy + Delta-G solvation = -4128.814878 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.04838 -39.94345 -38.81311 -38.65886 -36.08899 -35.22479 -34.20111 -32.92890 -32.07283 -31.12250 -29.15010 -27.98681 -26.97615 -26.68370 -24.78090 -24.49014 -23.66674 -23.16593 -21.84948 -21.22709 -20.21902 -18.32569 -17.92474 -17.50934 -17.42913 -17.11723 -16.91999 -16.69555 -16.41740 -16.03369 -15.77052 -15.61955 -15.54607 -15.29187 -15.00857 -14.75904 -14.65741 -14.34743 -14.28989 -13.37566 -13.35497 -13.28466 -13.16710 -12.94572 -12.90905 -12.73569 -12.65609 -12.62039 -12.39818 -12.33000 -12.20952 -12.05790 -11.84876 -11.73419 -11.65029 -11.56007 -11.43202 -11.28243 -10.77417 -10.56813 -10.54973 -10.31086 -9.90647 -8.65397 -7.83217 -5.30116 1.47545 1.48883 1.57412 1.63942 2.20691 2.52844 2.68777 2.92945 3.32706 3.53296 3.54572 3.61304 3.79192 3.85523 3.98106 4.05144 4.07607 4.24629 4.27492 4.36411 4.37992 4.42872 4.56729 4.60175 4.62253 4.62765 4.67156 4.69709 4.72575 4.74996 4.78192 4.82985 4.86028 4.94971 4.98267 5.03172 5.05536 5.07170 5.08760 5.15014 5.20190 5.37997 5.49159 5.54839 5.65176 5.70328 5.72918 6.17165 6.20380 6.42997 6.69474 7.17022 7.36430 7.88790 8.41953 9.24153 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014368 B = 0.003403 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.329846 B = 8226.151920 C = 9338.463761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.406 6.406 3 C 0.080 3.920 4 C -0.075 4.075 5 C 0.516 3.484 6 O -0.583 6.583 7 N -0.698 5.698 8 C 0.162 3.838 9 H 0.051 0.949 10 C -0.127 4.127 11 C 0.185 3.815 12 N -0.602 5.602 13 C -0.248 4.248 14 H 0.081 0.919 15 C -0.057 4.057 16 N -0.942 5.942 17 Si 0.964 3.036 18 H -0.288 1.288 19 H -0.300 1.300 20 H -0.263 1.263 21 C 0.159 3.841 22 H 0.009 0.991 23 C -0.126 4.126 24 C -0.113 4.113 25 C -0.129 4.129 26 C 0.051 3.949 27 O -0.394 6.394 28 C 0.047 3.953 29 C -0.122 4.122 30 H 0.042 0.958 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.053 0.947 34 H 0.091 0.909 35 H 0.415 0.585 36 H 0.039 0.961 37 H 0.059 0.941 38 H 0.055 0.945 39 H -0.015 1.015 40 H 0.246 0.754 41 H 0.040 0.960 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.072 0.928 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.106 0.894 48 H 0.115 0.885 49 H 0.021 0.979 50 H 0.108 0.892 51 H 0.044 0.956 52 H 0.106 0.894 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.931 13.170 -16.269 26.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.326 6.326 3 C 0.003 3.997 4 C -0.078 4.078 5 C 0.304 3.696 6 O -0.463 6.463 7 N -0.350 5.350 8 C 0.057 3.943 9 H 0.069 0.931 10 C -0.167 4.167 11 C 0.058 3.942 12 N -0.326 5.326 13 C -0.379 4.379 14 H 0.099 0.901 15 C -0.251 4.251 16 N -0.589 5.589 17 Si 0.793 3.207 18 H -0.215 1.215 19 H -0.227 1.227 20 H -0.188 1.188 21 C 0.053 3.947 22 H 0.027 0.973 23 C -0.183 4.183 24 C -0.153 4.153 25 C -0.166 4.166 26 C -0.025 4.025 27 O -0.314 6.314 28 C -0.029 4.029 29 C -0.159 4.159 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.254 0.746 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.003 0.997 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.104 0.896 46 H 0.108 0.892 47 H 0.125 0.875 48 H 0.132 0.868 49 H 0.040 0.960 50 H 0.126 0.874 51 H 0.062 0.938 52 H 0.125 0.875 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.091 13.387 -15.782 25.612 hybrid contribution 0.609 -0.918 0.727 1.320 sum -14.482 12.469 -15.055 24.328 Atomic orbital electron populations 1.22894 0.78914 1.03930 1.00823 1.87686 1.21720 1.27598 1.95580 1.22472 0.89287 0.85527 1.02404 1.21022 0.96540 0.96962 0.93274 1.20944 0.79462 0.81890 0.87351 1.90650 1.37976 1.68969 1.48754 1.46156 1.49662 1.14061 1.25106 1.20623 0.93923 0.92584 0.87192 0.93078 1.22274 0.96785 0.98213 0.99407 1.20430 0.92460 0.90307 0.91001 1.44406 1.04603 1.05546 1.78005 1.19584 0.96797 0.84151 1.37329 0.90104 1.25871 0.98986 1.01002 0.99254 1.70204 1.07487 1.34474 1.46729 0.85301 0.77936 0.80819 0.76639 1.21483 1.22741 1.18776 1.20643 0.85413 0.94694 0.93938 0.97305 1.21702 0.97847 0.97512 1.01244 1.22127 0.97486 0.96559 0.99101 1.22203 0.95547 1.02219 0.96659 1.22745 0.93890 0.83801 1.02103 1.87868 1.75337 1.25868 1.42277 1.22822 0.95093 0.97286 0.87735 1.21954 0.95751 0.93897 1.04345 0.93950 0.92335 0.88569 0.92899 0.89087 0.74624 0.94221 0.92255 0.92614 0.99731 0.94474 0.94116 0.90457 0.92582 0.90914 0.89631 0.89173 0.87530 0.86750 0.96011 0.87363 0.93803 0.87518 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -6.20 7.62 -148.98 -1.13 -7.33 16 3 C 0.08 1.16 4.81 71.98 0.35 1.50 16 4 C -0.07 -1.49 0.53 -52.81 -0.03 -1.51 16 5 C 0.52 15.09 5.11 87.66 0.45 15.54 16 6 O -0.58 -22.07 13.51 -3.02 -0.04 -22.11 16 7 N -0.70 -19.87 4.60 -442.38 -2.04 -21.91 16 8 C 0.16 5.78 2.42 45.02 0.11 5.89 16 9 H 0.05 2.13 7.58 -2.39 -0.02 2.11 16 10 C -0.13 -5.30 5.65 30.67 0.17 -5.13 16 11 C 0.18 9.56 5.29 86.36 0.46 10.01 16 12 N -0.60 -30.27 2.99 -675.25 -2.02 -32.29 16 13 C -0.25 -13.40 8.60 84.03 0.72 -12.68 16 14 H 0.08 4.12 6.21 -2.91 -0.02 4.11 16 15 C -0.06 -3.19 4.96 84.86 0.42 -2.77 16 16 N -0.94 -57.56 11.14 21.65 0.24 -57.32 16 17 Si 0.96 45.29 29.58 68.60 2.03 47.32 16 18 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 19 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 20 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 21 C 0.16 6.47 3.50 44.97 0.16 6.63 16 22 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 23 C -0.13 -4.38 7.94 71.98 0.57 -3.81 16 24 C -0.11 -3.66 4.84 30.67 0.15 -3.52 16 25 C -0.13 -2.26 4.68 30.75 0.14 -2.11 16 26 C 0.05 1.17 6.62 72.07 0.48 1.65 16 27 O -0.39 -10.05 10.77 -148.98 -1.60 -11.66 16 28 C 0.05 1.14 6.55 72.01 0.47 1.61 16 29 C -0.12 -2.31 4.56 30.69 0.14 -2.17 16 30 H 0.04 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.41 9.94 5.97 -92.71 -0.55 9.38 16 36 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.06 3.25 6.06 -2.39 -0.01 3.23 16 39 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 40 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 41 H 0.04 1.58 7.62 -2.39 -0.02 1.56 16 42 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.06 1.92 7.44 -2.39 -0.02 1.91 16 44 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.09 1.53 7.16 -2.39 -0.02 1.51 16 47 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 49 H 0.02 0.63 7.38 -2.39 -0.02 0.61 16 50 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 51 H 0.04 1.40 5.81 -2.39 -0.01 1.39 16 52 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 53 H 0.08 1.56 8.02 -2.39 -0.02 1.54 16 Total: -1.00 -72.01 396.41 1.77 -70.23 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 0.33 Total: 24.39 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 6.01 Total: 10.68 kcal Atomic # 7 Polarization: -107.71 SS G_CDS: -3.81 Total: -111.52 kcal Atomic # 8 Polarization: -38.32 SS G_CDS: -2.78 Total: -41.10 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -72.01 1.77 -70.23 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484980171.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.735 kcal (2) G-P(sol) polarization free energy of solvation -72.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds