Wall clock time and date at job start Tue Mar 31 2020 23:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 113.99763 * 2 1 4 4 C 1.53004 * 109.47248 * 179.97438 * 3 2 1 5 5 O 1.42904 * 109.46592 * 64.99982 * 4 3 2 6 6 C 1.42898 * 113.99583 * 180.02562 * 5 4 3 7 7 C 1.50708 * 109.47065 * 180.02562 * 6 5 4 8 8 O 1.21282 * 119.99869 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99836 * 180.02562 * 7 6 5 10 10 C 1.47177 * 125.66673 * 0.05037 * 9 7 6 11 11 C 1.53675 * 107.11304 * 181.45840 * 10 9 7 12 12 C 1.54531 * 103.64596 * 21.55229 * 11 10 9 13 13 C 1.47484 * 125.65615 * 179.97438 * 9 7 6 14 14 H 1.08998 * 110.35585 * 274.87330 * 13 9 7 15 15 C 1.52997 * 110.35746 * 37.16512 * 13 9 7 16 16 C 1.52272 * 110.67124 * 263.46885 * 11 10 9 17 17 C 1.53306 * 109.42452 * 176.87682 * 16 11 10 18 18 N 1.46933 * 108.70829 * 53.51747 * 17 16 11 19 19 C 1.36934 * 120.56337 * 125.77293 * 18 17 16 20 20 H 1.07997 * 120.00227 * 331.90446 * 19 18 17 21 21 C 1.38817 * 119.99776 * 151.90904 * 19 18 17 22 22 N 1.31623 * 119.99741 * 342.90130 * 21 19 18 23 23 Si 1.86794 * 120.00036 * 162.90574 * 21 19 18 24 24 H 1.48496 * 109.47278 * 266.24297 * 23 21 19 25 25 H 1.48503 * 109.47370 * 26.24465 * 23 21 19 26 26 H 1.48499 * 109.47092 * 146.24132 * 23 21 19 27 27 C 1.46928 * 118.86676 * 306.04181 * 18 17 16 28 28 C 1.52274 * 110.67602 * 139.64098 * 11 10 9 29 29 H 1.08995 * 109.47564 * 60.00273 * 1 2 3 30 30 H 1.09002 * 109.46737 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47347 * 299.99821 * 1 2 3 32 32 H 1.09004 * 109.47097 * 60.00130 * 3 2 1 33 33 H 1.09000 * 109.46965 * 299.99912 * 3 2 1 34 34 H 1.08998 * 109.47480 * 305.00417 * 4 3 2 35 35 H 1.08996 * 109.47528 * 184.99869 * 4 3 2 36 36 H 1.08999 * 109.47497 * 59.99976 * 6 5 4 37 37 H 1.09003 * 109.47375 * 300.00111 * 6 5 4 38 38 H 1.08998 * 109.90963 * 62.08943 * 10 9 7 39 39 H 1.09000 * 109.90888 * 300.83087 * 10 9 7 40 40 H 1.09004 * 111.01458 * 83.22671 * 12 11 10 41 41 H 1.09003 * 111.02004 * 207.10255 * 12 11 10 42 42 H 1.08996 * 109.47431 * 175.47096 * 15 13 9 43 43 H 1.08999 * 109.46708 * 295.47565 * 15 13 9 44 44 H 1.09002 * 109.47406 * 55.47346 * 15 13 9 45 45 H 1.09000 * 109.47936 * 56.88719 * 16 11 10 46 46 H 1.09006 * 109.48767 * 296.86929 * 16 11 10 47 47 H 1.09003 * 109.59652 * 293.75471 * 17 16 11 48 48 H 1.09000 * 109.73151 * 173.36277 * 17 16 11 49 49 H 0.96999 * 119.99352 * 180.02562 * 22 21 19 50 50 H 1.08992 * 109.59687 * 173.73002 * 27 18 17 51 51 H 1.09000 * 109.59791 * 294.19499 * 27 18 17 52 52 H 1.09002 * 109.47569 * 303.10505 * 28 11 10 53 53 H 1.08993 * 109.47753 * 63.12374 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9657 0.5793 -1.2202 6 6 5.3820 0.4189 -1.3216 7 6 5.7214 -0.2249 -2.6414 8 8 4.8374 -0.5178 -3.4183 9 7 7.0072 -0.4760 -2.9577 10 6 8.1735 -0.1756 -2.1117 11 6 9.4237 -0.6013 -2.8975 12 6 8.9437 -0.6158 -4.3663 13 6 7.4789 -1.0988 -4.2086 14 1 7.4444 -2.1852 -4.1277 15 6 6.6321 -0.6249 -5.3915 16 6 9.8735 -1.9944 -2.4784 17 6 11.0727 -2.4214 -3.3327 18 7 12.1063 -1.3805 -3.2480 19 6 13.3836 -1.6968 -2.8692 20 1 13.5608 -2.5409 -2.2192 21 6 14.4508 -0.9324 -3.3206 22 7 14.2966 -0.1328 -4.3547 23 14 16.1056 -1.0387 -2.4607 24 1 16.1996 0.0301 -1.4341 25 1 16.2398 -2.3656 -1.8075 26 1 17.1932 -0.8653 -3.4569 27 6 11.7444 0.0064 -3.5708 28 6 10.5423 0.4167 -2.7207 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8508 0.5686 0.8426 35 1 3.9784 2.1766 0.0902 36 1 5.7354 -0.2134 -0.5071 37 1 5.8637 1.3947 -1.2593 38 1 8.1112 -0.7383 -1.1803 39 1 8.2136 0.8930 -1.9007 40 1 8.9816 0.3837 -4.7998 41 1 9.5256 -1.3202 -4.9608 42 1 7.0419 -1.0294 -6.3169 43 1 5.6064 -0.9717 -5.2659 44 1 6.6447 0.4642 -5.4342 45 1 9.0549 -2.6994 -2.6228 46 1 10.1619 -1.9825 -1.4273 47 1 10.7587 -2.5412 -4.3697 48 1 11.4724 -3.3647 -2.9605 49 1 15.0425 0.4010 -4.6704 50 1 12.5859 0.6640 -3.3528 51 1 11.4839 0.0800 -4.6266 52 1 10.1918 1.3999 -3.0348 53 1 10.8374 0.4539 -1.6722 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488976470.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:41 Heat of formation + Delta-G solvation = -119.305520 kcal Electronic energy + Delta-G solvation = -31014.852725 eV Core-core repulsion = 26886.716991 eV Total energy + Delta-G solvation = -4128.135734 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.75587 -40.04508 -39.15592 -38.02613 -37.32494 -34.75367 -33.21219 -32.64604 -31.53836 -31.44712 -28.93053 -28.15950 -27.14908 -27.05746 -25.66996 -24.02002 -23.51166 -22.90819 -22.52623 -20.09843 -19.63206 -18.47353 -18.11575 -17.81174 -17.62645 -17.44432 -16.79258 -16.66274 -16.28630 -16.11462 -15.75350 -15.56453 -15.41184 -15.07628 -14.92119 -14.76125 -14.42997 -14.28890 -13.97618 -13.61544 -13.51916 -13.26967 -13.13461 -13.09016 -13.01481 -12.94237 -12.82194 -12.56870 -12.35818 -12.27575 -12.17643 -12.07469 -12.00310 -11.83606 -11.71448 -11.41659 -11.05792 -10.97199 -10.72019 -10.62833 -10.52392 -10.46366 -9.64738 -8.60067 -7.83131 -5.27390 1.48529 1.50266 1.58317 1.58631 1.68362 2.54335 2.84545 2.88974 3.29786 3.44770 3.53715 3.74786 3.82428 3.87131 4.08404 4.13141 4.20140 4.21905 4.25966 4.28586 4.31142 4.44879 4.47778 4.50488 4.53868 4.57656 4.58926 4.65613 4.71224 4.74207 4.76411 4.78562 4.85646 4.85896 4.93057 4.98294 5.10059 5.15272 5.24279 5.28583 5.32885 5.37610 5.47405 5.50184 5.60121 5.71153 5.86652 6.05911 6.27107 6.44451 6.53718 7.16895 7.20950 7.93379 8.43601 9.22496 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023564 B = 0.002145 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.948069 B =13050.561103 C =13613.862842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.057 3.943 4 C 0.055 3.945 5 O -0.393 6.393 6 C 0.051 3.949 7 C 0.523 3.477 8 O -0.566 6.566 9 N -0.609 5.609 10 C 0.110 3.890 11 C -0.052 4.052 12 C -0.112 4.112 13 C 0.138 3.862 14 H 0.074 0.926 15 C -0.153 4.153 16 C -0.107 4.107 17 C 0.141 3.859 18 N -0.607 5.607 19 C -0.257 4.257 20 H 0.064 0.936 21 C -0.050 4.050 22 N -0.933 5.933 23 Si 0.962 3.038 24 H -0.286 1.286 25 H -0.270 1.270 26 H -0.298 1.298 27 C 0.179 3.821 28 C -0.112 4.112 29 H 0.043 0.957 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.048 0.952 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.017 0.983 48 H 0.048 0.952 49 H 0.248 0.752 50 H 0.049 0.951 51 H -0.002 1.002 52 H 0.070 0.930 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.261 4.745 10.462 25.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.019 4.019 4 C -0.021 4.021 5 O -0.312 6.312 6 C -0.028 4.028 7 C 0.312 3.688 8 O -0.445 6.445 9 N -0.345 5.345 10 C -0.012 4.012 11 C -0.053 4.053 12 C -0.150 4.150 13 C 0.036 3.964 14 H 0.092 0.908 15 C -0.210 4.210 16 C -0.145 4.145 17 C 0.016 3.984 18 N -0.331 5.331 19 C -0.388 4.388 20 H 0.082 0.918 21 C -0.245 4.245 22 N -0.580 5.580 23 Si 0.791 3.209 24 H -0.213 1.213 25 H -0.195 1.195 26 H -0.225 1.225 27 C 0.053 3.947 28 C -0.151 4.151 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.113 0.887 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.067 0.933 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.034 0.966 48 H 0.067 0.933 49 H 0.057 0.943 50 H 0.068 0.932 51 H 0.017 0.983 52 H 0.089 0.911 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.726 4.459 9.869 25.174 hybrid contribution 1.282 0.218 -0.002 1.300 sum -21.444 4.677 9.867 24.064 Atomic orbital electron populations 1.22890 0.79697 1.03552 1.00850 1.87928 1.21367 1.28907 1.95601 1.22753 0.92151 0.84946 1.02028 1.22873 0.93901 0.98990 0.86336 1.88027 1.20526 1.82849 1.39801 1.22271 0.83650 1.02288 0.94585 1.20458 0.80805 0.78685 0.88802 1.90658 1.47423 1.53874 1.52552 1.48634 1.05190 1.60835 1.19795 1.22286 0.82961 1.02033 0.93875 1.20839 0.93512 0.96164 0.94754 1.22841 0.93298 1.02046 0.96786 1.21933 0.93407 0.97042 0.84028 0.90795 1.22023 1.00674 1.01015 0.97335 1.21769 0.97471 0.95264 1.00043 1.21086 0.89343 0.91540 0.96450 1.44271 1.06145 1.03135 1.79540 1.19494 0.83972 1.13515 1.21808 0.91847 1.25725 1.00729 1.01042 0.97033 1.70182 1.31663 1.31178 1.24939 0.85332 0.79916 0.78063 0.77607 1.21253 1.19493 1.22546 1.20483 0.94565 0.85622 0.94003 1.21812 0.95238 0.97298 1.00735 0.93845 0.89268 0.92207 0.88694 0.92903 0.91429 0.88691 0.88126 0.87601 0.89295 0.89256 0.90915 0.90579 0.90960 0.91893 0.93273 0.91037 0.91723 0.96556 0.93327 0.94273 0.93207 0.98346 0.91127 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.60 16 2 O -0.42 -8.80 10.67 -144.34 -1.54 -10.34 16 3 C 0.06 0.86 6.32 71.98 0.45 1.31 16 4 C 0.05 0.82 6.32 71.98 0.45 1.27 16 5 O -0.39 -9.45 9.84 -125.55 -1.24 -10.68 16 6 C 0.05 0.99 5.61 71.24 0.40 1.39 16 7 C 0.52 14.22 7.71 87.66 0.68 14.89 16 8 O -0.57 -20.36 14.23 16.00 0.23 -20.13 16 9 N -0.61 -14.93 3.25 -788.64 -2.56 -17.49 16 10 C 0.11 2.29 5.67 86.48 0.49 2.78 16 11 C -0.05 -1.41 0.55 -51.91 -0.03 -1.44 16 12 C -0.11 -3.11 4.35 31.81 0.14 -2.97 16 13 C 0.14 3.65 3.44 45.50 0.16 3.80 16 14 H 0.07 1.97 7.74 -2.39 -0.02 1.95 16 15 C -0.15 -4.13 8.60 71.98 0.62 -3.51 16 16 C -0.11 -3.12 4.74 30.46 0.14 -2.97 16 17 C 0.14 5.42 6.19 86.40 0.53 5.96 16 18 N -0.61 -28.68 2.99 -699.53 -2.09 -30.77 16 19 C -0.26 -13.67 9.57 84.04 0.80 -12.86 16 20 H 0.06 3.31 7.89 -2.91 -0.02 3.29 16 21 C -0.05 -2.72 4.91 84.86 0.42 -2.30 16 22 N -0.93 -53.93 11.21 21.65 0.24 -53.69 16 23 Si 0.96 43.95 29.59 68.60 2.03 45.98 16 24 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 26 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 27 C 0.18 7.97 5.00 86.25 0.43 8.40 16 28 C -0.11 -3.58 4.70 30.30 0.14 -3.44 16 29 H 0.04 0.55 8.14 -2.39 -0.02 0.54 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.09 1.55 7.82 -2.39 -0.02 1.53 16 39 H 0.09 1.54 7.78 -2.39 -0.02 1.52 16 40 H 0.07 2.05 7.92 -2.38 -0.02 2.04 16 41 H 0.08 2.38 6.08 -2.39 -0.01 2.37 16 42 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.06 1.96 6.09 -2.39 -0.01 1.94 16 44 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.07 1.84 7.47 -2.39 -0.02 1.82 16 46 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 47 H 0.02 0.65 6.47 -2.39 -0.02 0.63 16 48 H 0.05 1.88 7.93 -2.39 -0.02 1.86 16 49 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 50 H 0.05 2.59 6.04 -2.39 -0.01 2.57 16 51 H 0.00 -0.07 7.56 -2.39 -0.02 -0.09 16 52 H 0.07 2.00 8.11 -2.39 -0.02 1.98 16 53 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -72.95 406.83 3.02 -69.92 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.87 Total: 15.28 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 7.08 Total: 11.92 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -4.41 Total: -101.95 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -2.55 Total: -41.15 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -72.95 3.02 -69.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488976470.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.383 kcal (2) G-P(sol) polarization free energy of solvation -72.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds