Wall clock time and date at job start Tue Mar 31 2020 23:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99852 * 2 1 4 4 C 1.53006 * 109.47084 * 179.97438 * 3 2 1 5 5 O 1.42905 * 109.47028 * 64.99950 * 4 3 2 6 6 C 1.42899 * 114.00065 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47115 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99804 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00199 * 180.02562 * 7 6 5 10 10 C 1.47185 * 125.65921 * 359.69033 * 9 7 6 11 11 C 1.53692 * 107.09974 * 178.39246 * 10 9 7 12 12 C 1.54533 * 103.72854 * 338.79514 * 11 10 9 13 13 C 1.47481 * 125.66400 * 179.97438 * 9 7 6 14 14 H 1.08997 * 110.35263 * 85.03306 * 13 9 7 15 15 C 1.52998 * 110.35423 * 322.85244 * 13 9 7 16 16 C 1.52273 * 110.45053 * 96.81882 * 11 10 9 17 17 C 1.53317 * 109.41176 * 183.16907 * 16 11 10 18 18 N 1.46926 * 108.70925 * 306.48848 * 17 16 11 19 19 C 1.36936 * 120.56291 * 234.24986 * 18 17 16 20 20 H 1.08000 * 119.99775 * 27.92402 * 19 18 17 21 21 C 1.38814 * 119.99969 * 207.91676 * 19 18 17 22 22 N 1.31620 * 120.00001 * 17.45144 * 21 19 18 23 23 Si 1.86807 * 119.99934 * 197.45477 * 21 19 18 24 24 H 1.48502 * 109.46908 * 60.00038 * 23 21 19 25 25 H 1.48493 * 109.47032 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46941 * 300.00128 * 23 21 19 27 27 C 1.46937 * 118.87461 * 54.23123 * 18 17 16 28 28 C 1.52281 * 110.82375 * 220.60265 * 11 10 9 29 29 H 1.09001 * 109.47116 * 60.00278 * 1 2 3 30 30 H 1.08996 * 109.46884 * 299.99949 * 1 2 3 31 31 H 1.09002 * 109.47102 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47013 * 299.99869 * 3 2 1 33 33 H 1.08997 * 109.47299 * 60.00275 * 3 2 1 34 34 H 1.08998 * 109.47086 * 184.99740 * 4 3 2 35 35 H 1.09000 * 109.47321 * 305.00531 * 4 3 2 36 36 H 1.09001 * 109.47100 * 300.00151 * 6 5 4 37 37 H 1.08994 * 109.47013 * 59.99825 * 6 5 4 38 38 H 1.09003 * 109.90728 * 297.89793 * 10 9 7 39 39 H 1.08998 * 109.90822 * 59.15543 * 10 9 7 40 40 H 1.08996 * 111.01749 * 276.57131 * 12 11 10 41 41 H 1.08999 * 111.01221 * 152.68298 * 12 11 10 42 42 H 1.09009 * 109.47282 * 61.45023 * 15 13 9 43 43 H 1.08995 * 109.47523 * 181.45470 * 15 13 9 44 44 H 1.09005 * 109.47149 * 301.45409 * 15 13 9 45 45 H 1.08989 * 109.48396 * 303.15189 * 16 11 10 46 46 H 1.08999 * 109.48243 * 63.18911 * 16 11 10 47 47 H 1.09004 * 109.59865 * 186.72244 * 17 16 11 48 48 H 1.08996 * 109.72782 * 66.33460 * 17 16 11 49 49 H 0.97001 * 119.99629 * 179.97438 * 22 21 19 50 50 H 1.09002 * 109.60022 * 185.99652 * 27 18 17 51 51 H 1.09005 * 109.72873 * 65.60094 * 27 18 17 52 52 H 1.09003 * 109.47715 * 297.01701 * 28 11 10 53 53 H 1.09007 * 109.47651 * 57.03634 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9659 0.5792 -1.2202 6 6 5.3822 0.4187 -1.3216 7 6 5.7215 -0.2250 -2.6413 8 8 4.8374 -0.5180 -3.4182 9 7 7.0073 -0.4762 -2.9577 10 6 8.1741 -0.1691 -2.1148 11 6 9.4184 -0.6686 -2.8661 12 6 8.8552 -1.7168 -3.8521 13 6 7.4791 -1.0990 -4.2085 14 1 7.5906 -0.3458 -4.9885 15 6 6.5064 -2.1906 -4.6593 16 6 10.0721 0.4740 -3.6315 17 6 11.2620 -0.0652 -4.4340 18 7 12.1530 -0.7958 -3.5223 19 6 13.4817 -0.4746 -3.4414 20 1 13.8081 0.5318 -3.6584 21 6 14.4090 -1.4424 -3.0803 22 7 14.0900 -2.7175 -3.1489 23 14 16.1096 -0.9351 -2.4969 24 1 15.9843 -0.0878 -1.2838 25 1 16.9044 -2.1473 -2.1749 26 1 16.7918 -0.1667 -3.5690 27 6 11.5941 -1.8766 -2.6986 28 6 10.4023 -1.3255 -1.9073 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6886 1.8464 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 3.9784 2.1766 0.0902 35 1 3.8508 0.5685 0.8426 36 1 5.8639 1.3945 -1.2592 37 1 5.7354 -0.2135 -0.5070 38 1 8.2424 0.9067 -1.9532 39 1 8.0878 -0.6857 -1.1589 40 1 8.7346 -2.6851 -3.3665 41 1 9.4870 -1.8006 -4.7364 42 1 5.5291 -1.7487 -4.8541 43 1 6.8816 -2.6583 -5.5696 44 1 6.4154 -2.9425 -3.8754 45 1 9.3459 0.9180 -4.3122 46 1 10.4208 1.2301 -2.9281 47 1 11.8036 0.7650 -4.8873 48 1 10.9052 -0.7381 -5.2137 49 1 14.7382 -3.3938 -2.8970 50 1 12.3547 -2.2406 -2.0079 51 1 11.2613 -2.6931 -3.3395 52 1 10.7545 -0.5879 -1.1861 53 1 9.9069 -2.1412 -1.3805 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488976471.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:45 Heat of formation + Delta-G solvation = -118.634115 kcal Electronic energy + Delta-G solvation = -31020.498399 eV Core-core repulsion = 26892.391779 eV Total energy + Delta-G solvation = -4128.106620 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.75382 -40.04074 -39.15482 -38.02442 -37.32018 -34.74926 -33.21738 -32.64000 -31.51445 -31.44580 -28.92163 -28.15723 -27.15179 -27.05740 -25.66564 -24.02317 -23.51089 -22.90359 -22.52585 -20.10472 -19.62877 -18.47095 -18.09778 -17.88656 -17.61900 -17.33154 -16.82714 -16.75518 -16.21317 -16.12987 -15.73851 -15.51331 -15.43578 -15.08897 -14.94255 -14.75763 -14.40288 -14.30129 -14.00548 -13.60451 -13.41748 -13.35668 -13.14271 -13.09070 -12.99522 -12.91656 -12.82815 -12.52159 -12.35880 -12.31622 -12.20333 -12.05461 -12.01093 -11.84442 -11.72123 -11.41734 -11.05246 -10.97133 -10.71459 -10.63093 -10.50387 -10.45213 -9.64762 -8.60168 -7.82795 -5.26603 1.49445 1.50989 1.57648 1.57963 1.68510 2.54793 2.84569 2.89058 3.30031 3.44756 3.53824 3.75114 3.82459 3.87299 4.08449 4.13272 4.20403 4.21583 4.26090 4.28873 4.31240 4.44906 4.47819 4.50587 4.54258 4.57671 4.58789 4.65771 4.71368 4.74028 4.77313 4.78021 4.85186 4.85797 4.92944 4.98017 5.10074 5.15186 5.24294 5.28688 5.32944 5.38082 5.47490 5.51119 5.60139 5.71010 5.86718 6.05952 6.27237 6.44447 6.53648 7.16903 7.21014 7.93767 8.43933 9.22648 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023568 B = 0.002146 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.776206 B =13044.901094 C =13580.364542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.057 3.943 4 C 0.055 3.945 5 O -0.393 6.393 6 C 0.051 3.949 7 C 0.523 3.477 8 O -0.566 6.566 9 N -0.609 5.609 10 C 0.110 3.890 11 C -0.052 4.052 12 C -0.112 4.112 13 C 0.139 3.861 14 H 0.076 0.924 15 C -0.157 4.157 16 C -0.106 4.106 17 C 0.141 3.859 18 N -0.607 5.607 19 C -0.259 4.259 20 H 0.064 0.936 21 C -0.050 4.050 22 N -0.934 5.934 23 Si 0.962 3.038 24 H -0.278 1.278 25 H -0.297 1.297 26 H -0.278 1.278 27 C 0.179 3.821 28 C -0.112 4.112 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.065 0.935 47 H 0.049 0.951 48 H 0.016 0.984 49 H 0.248 0.752 50 H 0.050 0.950 51 H -0.002 1.002 52 H 0.060 0.940 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.881 9.290 8.350 25.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.019 4.019 4 C -0.021 4.021 5 O -0.312 6.312 6 C -0.028 4.028 7 C 0.313 3.687 8 O -0.445 6.445 9 N -0.344 5.344 10 C -0.012 4.012 11 C -0.053 4.053 12 C -0.150 4.150 13 C 0.037 3.963 14 H 0.094 0.906 15 C -0.214 4.214 16 C -0.145 4.145 17 C 0.015 3.985 18 N -0.331 5.331 19 C -0.389 4.389 20 H 0.082 0.918 21 C -0.246 4.246 22 N -0.580 5.580 23 Si 0.791 3.209 24 H -0.204 1.204 25 H -0.224 1.224 26 H -0.204 1.204 27 C 0.053 3.947 28 C -0.151 4.151 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.085 0.915 36 H 0.126 0.874 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.067 0.933 48 H 0.034 0.966 49 H 0.057 0.943 50 H 0.068 0.932 51 H 0.016 0.984 52 H 0.078 0.922 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.359 8.814 7.849 25.283 hybrid contribution 1.265 -0.060 0.115 1.271 sum -21.094 8.753 7.964 24.187 Atomic orbital electron populations 1.22891 0.79697 1.03536 1.00862 1.87930 1.21371 1.28939 1.95603 1.22755 0.92143 0.84934 1.02047 1.22876 0.93911 0.99002 0.86314 1.88026 1.20527 1.82862 1.39786 1.22270 0.83663 1.02327 0.94538 1.20456 0.80789 0.78669 0.88816 1.90647 1.47439 1.53705 1.52704 1.48627 1.05184 1.60509 1.20125 1.22294 0.82982 1.01825 0.94063 1.20846 0.93459 0.95522 0.95437 1.22832 0.94017 0.98159 0.99994 1.21922 0.93438 0.94700 0.86272 0.90579 1.22073 1.00135 0.97862 1.01366 1.21772 0.96947 0.96615 0.99151 1.21093 0.91283 0.94523 0.91574 1.44278 1.04799 1.39532 1.44457 1.19456 0.83992 0.93681 1.41788 0.91788 1.25723 1.00999 0.95071 1.02767 1.70175 1.35889 0.99674 1.52252 0.85424 0.80285 0.76572 0.78655 1.20357 1.22358 1.20430 1.20579 0.93038 0.88570 0.92505 1.21888 0.96074 0.99774 0.97355 0.93811 0.92202 0.89308 0.92850 0.88696 0.88604 0.91520 0.87416 0.88309 0.89007 0.89536 0.91110 0.90535 0.91589 0.90959 0.93433 0.90903 0.91645 0.93291 0.96584 0.94271 0.93167 0.98365 0.92153 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.42 -8.86 10.67 -144.35 -1.54 -10.40 16 3 C 0.06 0.86 6.32 71.98 0.45 1.31 16 4 C 0.05 0.82 6.32 71.98 0.45 1.27 16 5 O -0.39 -9.44 9.84 -125.56 -1.24 -10.68 16 6 C 0.05 0.99 5.61 71.24 0.40 1.39 16 7 C 0.52 14.21 7.71 87.66 0.68 14.89 16 8 O -0.57 -20.33 14.16 16.00 0.23 -20.10 16 9 N -0.61 -14.93 3.25 -788.68 -2.56 -17.49 16 10 C 0.11 2.29 5.67 86.48 0.49 2.78 16 11 C -0.05 -1.41 0.55 -51.91 -0.03 -1.44 16 12 C -0.11 -3.15 4.35 31.80 0.14 -3.01 16 13 C 0.14 3.67 3.44 45.49 0.16 3.83 16 14 H 0.08 2.00 7.75 -2.39 -0.02 1.98 16 15 C -0.16 -4.30 8.71 71.98 0.63 -3.67 16 16 C -0.11 -3.06 4.72 30.46 0.14 -2.92 16 17 C 0.14 5.38 6.18 86.40 0.53 5.91 16 18 N -0.61 -28.66 2.98 -698.59 -2.08 -30.74 16 19 C -0.26 -13.72 9.57 84.03 0.80 -12.92 16 20 H 0.06 3.32 7.89 -2.91 -0.02 3.30 16 21 C -0.05 -2.74 4.90 84.86 0.42 -2.32 16 22 N -0.93 -54.05 11.20 21.65 0.24 -53.81 16 23 Si 0.96 43.91 29.59 68.60 2.03 45.94 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 26 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 27 C 0.18 8.00 5.03 86.40 0.43 8.44 16 28 C -0.11 -3.62 4.73 30.46 0.14 -3.47 16 29 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.09 1.54 7.82 -2.39 -0.02 1.52 16 39 H 0.09 1.54 7.79 -2.39 -0.02 1.52 16 40 H 0.07 2.04 7.91 -2.39 -0.02 2.02 16 41 H 0.08 2.40 6.08 -2.39 -0.01 2.39 16 42 H 0.07 2.08 5.89 -2.38 -0.01 2.07 16 43 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 45 H 0.07 1.83 7.47 -2.39 -0.02 1.81 16 46 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.05 1.88 7.93 -2.38 -0.02 1.86 16 48 H 0.02 0.64 6.48 -2.39 -0.02 0.62 16 49 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 50 H 0.05 2.62 6.02 -2.39 -0.01 2.60 16 51 H 0.00 -0.08 7.56 -2.38 -0.02 -0.10 16 52 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 53 H 0.07 1.99 8.11 -2.38 -0.02 1.97 16 Total: -1.00 -72.97 406.71 3.04 -69.93 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.87 Total: 15.68 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 7.09 Total: 11.67 kcal Atomic # 7 Polarization: -97.64 SS G_CDS: -4.40 Total: -102.04 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -2.55 Total: -41.17 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -72.97 3.04 -69.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488976471.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.705 kcal (2) G-P(sol) polarization free energy of solvation -72.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds