Wall clock time and date at job start Tue Mar 31 2020 23:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.49852 * 2 1 4 4 C 1.53040 * 109.49692 * 120.06438 * 2 1 3 5 5 C 1.53044 * 109.53728 * 58.61804 * 4 2 1 6 6 C 1.53192 * 109.31455 * 61.36230 * 5 4 2 7 7 N 1.46924 * 108.77666 * 305.37062 * 6 5 4 8 8 C 1.34786 * 120.62564 * 233.60687 * 7 6 5 9 9 O 1.21286 * 119.99525 * 174.86269 * 8 7 6 10 10 C 1.50697 * 120.00162 * 354.86693 * 8 7 6 11 11 C 1.52998 * 109.47083 * 179.97438 * 10 8 7 12 12 O 1.42964 * 109.47478 * 295.00268 * 11 10 8 13 13 C 1.43088 * 113.77017 * 181.20935 * 12 11 10 14 14 C 1.53255 * 108.94891 * 57.96344 * 13 12 11 15 15 C 1.53258 * 108.84499 * 305.47969 * 14 13 12 16 16 O 1.42966 * 109.46928 * 174.99821 * 11 10 8 17 17 C 1.46925 * 118.76994 * 53.58307 * 7 6 5 18 18 H 1.09003 * 109.56026 * 66.21264 * 17 7 6 19 19 C 1.52996 * 109.61826 * 186.64544 * 17 7 6 20 20 C 1.53002 * 109.47412 * 180.45656 * 19 17 7 21 21 N 1.46493 * 109.47588 * 174.74034 * 20 19 17 22 22 C 1.36933 * 120.00645 * 180.02562 * 21 20 19 23 23 H 1.08009 * 119.99395 * 359.97438 * 22 21 20 24 24 C 1.38812 * 120.00564 * 180.02562 * 22 21 20 25 25 N 1.31613 * 119.99774 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00061 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47243 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.47250 * 119.99826 * 26 24 22 29 29 H 1.48501 * 109.46847 * 239.99920 * 26 24 22 30 30 H 1.09001 * 109.46861 * 300.00436 * 1 2 3 31 31 H 1.09002 * 109.46787 * 59.99816 * 1 2 3 32 32 H 1.08999 * 109.47130 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.45909 * 178.63132 * 4 2 1 34 34 H 1.08997 * 109.46209 * 298.60992 * 4 2 1 35 35 H 1.09005 * 109.49683 * 181.31611 * 5 4 2 36 36 H 1.09002 * 109.49817 * 301.41234 * 5 4 2 37 37 H 1.09004 * 109.58394 * 65.15008 * 6 5 4 38 38 H 1.09000 * 109.58886 * 185.57362 * 6 5 4 39 39 H 1.09004 * 109.47003 * 300.00070 * 10 8 7 40 40 H 1.09000 * 109.47157 * 59.99864 * 10 8 7 41 41 H 1.09003 * 109.46969 * 55.00271 * 11 10 8 42 42 H 1.09009 * 109.55617 * 298.12574 * 13 12 11 43 43 H 1.08998 * 109.55908 * 177.80522 * 13 12 11 44 44 H 1.08992 * 109.57717 * 185.66856 * 14 13 12 45 45 H 1.09001 * 109.67721 * 65.34809 * 14 13 12 46 46 H 1.08996 * 109.55973 * 294.68085 * 15 14 13 47 47 H 1.09000 * 109.56206 * 174.35936 * 15 14 13 48 48 H 1.08997 * 109.47137 * 300.45304 * 19 17 7 49 49 H 1.09004 * 109.47558 * 60.45692 * 19 17 7 50 50 H 1.09004 * 109.47050 * 294.73844 * 20 19 17 51 51 H 1.09006 * 109.47106 * 54.73533 * 20 19 17 52 52 H 0.97004 * 119.99685 * 0.02562 * 21 20 19 53 53 H 0.97003 * 120.00337 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0408 -0.7227 1.2486 5 6 1.5036 -2.1557 1.2662 6 6 2.0152 -2.9038 0.0312 7 7 1.6528 -2.1382 -1.1693 8 6 0.9761 -2.7225 -2.1780 9 8 0.6014 -2.0586 -3.1214 10 6 0.6850 -4.2004 -2.1336 11 6 -0.0894 -4.6056 -3.3893 12 8 -1.3689 -3.9678 -3.3867 13 6 -2.1844 -4.3064 -4.5127 14 6 -2.3798 -5.8261 -4.5466 15 6 -1.0046 -6.5025 -4.5316 16 8 -0.2641 -6.0245 -3.4043 17 6 2.0413 -0.7235 -1.2498 18 1 3.1274 -0.6455 -1.2985 19 6 1.4223 -0.0911 -2.4979 20 6 1.8381 1.3788 -2.5845 21 7 1.3505 1.9510 -3.8419 22 6 1.6045 3.2629 -4.1412 23 1 2.1640 3.8759 -3.4500 24 6 1.1420 3.8052 -5.3323 25 7 0.4598 3.0583 -6.1744 26 14 1.4879 5.5950 -5.7402 27 1 2.2684 6.2121 -4.6378 28 1 2.2672 5.6736 -7.0019 29 1 0.2037 6.3221 -5.9055 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1305 -0.7437 1.2357 34 1 1.6981 -0.1957 2.1390 35 1 1.8487 -2.6625 2.1675 36 1 0.4138 -2.1359 1.2540 37 1 3.0992 -3.0036 0.0874 38 1 1.5571 -3.8919 -0.0134 39 1 1.6228 -4.7543 -2.0900 40 1 0.0880 -4.4267 -1.2501 41 1 0.4677 -4.2988 -4.2746 42 1 -1.6933 -3.9812 -5.4299 43 1 -3.1535 -3.8159 -4.4221 44 1 -2.9143 -6.1054 -5.4545 45 1 -2.9518 -6.1422 -3.6742 46 1 -0.4689 -6.2605 -5.4494 47 1 -1.1300 -7.5825 -4.4544 48 1 1.7713 -0.6202 -3.3845 49 1 0.3359 -0.1584 -2.4386 50 1 1.4101 1.9276 -1.7456 51 1 2.9252 1.4515 -2.5496 52 1 0.8477 1.4005 -4.4625 53 1 0.1369 3.4371 -7.0070 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488993177.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:12 Heat of formation + Delta-G solvation = -131.791191 kcal Electronic energy + Delta-G solvation = -32025.314475 eV Core-core repulsion = 27896.637322 eV Total energy + Delta-G solvation = -4128.677154 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.89908 -40.82891 -38.76950 -36.99882 -36.68314 -35.10728 -34.13370 -34.01871 -32.55473 -31.22095 -29.74572 -27.77945 -26.95740 -26.51386 -25.34486 -24.59782 -23.65035 -22.19514 -22.03144 -20.97675 -19.39962 -19.21039 -18.49582 -17.69164 -17.47286 -17.24145 -16.88999 -16.59411 -16.37549 -16.00501 -15.85534 -15.73914 -15.30463 -15.23103 -14.96898 -14.90438 -14.54815 -14.31172 -14.16256 -13.98468 -13.82557 -13.51678 -13.16162 -13.07184 -12.94732 -12.85437 -12.51284 -12.44415 -12.39101 -12.30249 -12.11857 -12.09330 -12.06064 -11.84784 -11.73665 -11.66625 -11.29577 -11.19670 -11.01021 -10.91937 -10.70061 -9.97041 -9.42678 -9.01747 -7.95657 -5.26234 1.43595 1.46621 1.56800 1.70874 1.85780 2.54017 2.64545 2.65720 3.36709 3.52340 3.71562 3.76043 3.76969 3.82176 3.84918 3.94330 4.06895 4.10432 4.15865 4.21615 4.27199 4.37608 4.42197 4.42878 4.50140 4.51911 4.60535 4.62925 4.66965 4.73549 4.79338 4.80058 4.82742 4.83914 4.87020 4.95356 5.01144 5.08188 5.14242 5.24044 5.27572 5.34436 5.42809 5.46378 5.54724 5.59214 5.80022 5.81091 6.13870 6.25544 6.52016 7.29596 7.31494 8.07440 8.31942 9.28861 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009093 B = 0.003483 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3078.548376 B = 8037.990190 C =10554.966242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.102 4.102 3 H 0.074 0.926 4 C -0.109 4.109 5 C -0.134 4.134 6 C 0.099 3.901 7 N -0.604 5.604 8 C 0.506 3.494 9 O -0.559 6.559 10 C -0.116 4.116 11 C 0.262 3.738 12 O -0.404 6.404 13 C 0.045 3.955 14 C -0.182 4.182 15 C 0.050 3.950 16 O -0.401 6.401 17 C 0.163 3.837 18 H 0.079 0.921 19 C -0.090 4.090 20 C 0.149 3.851 21 N -0.748 5.748 22 C -0.246 4.246 23 H 0.078 0.922 24 C -0.081 4.081 25 N -0.974 5.974 26 Si 0.981 3.019 27 H -0.263 1.263 28 H -0.291 1.291 29 H -0.291 1.291 30 H 0.063 0.937 31 H 0.025 0.975 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.143 0.857 40 H 0.124 0.876 41 H 0.044 0.956 42 H 0.045 0.955 43 H 0.101 0.899 44 H 0.108 0.892 45 H 0.082 0.918 46 H 0.057 0.943 47 H 0.126 0.874 48 H 0.053 0.947 49 H 0.054 0.946 50 H 0.021 0.979 51 H 0.016 0.984 52 H 0.369 0.631 53 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.806 -24.081 16.136 28.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.122 4.122 3 H 0.093 0.907 4 C -0.146 4.146 5 C -0.172 4.172 6 C -0.022 4.022 7 N -0.337 5.337 8 C 0.295 3.705 9 O -0.437 6.437 10 C -0.156 4.156 11 C 0.166 3.834 12 O -0.324 6.324 13 C -0.031 4.031 14 C -0.220 4.220 15 C -0.026 4.026 16 O -0.322 6.322 17 C 0.059 3.941 18 H 0.097 0.903 19 C -0.128 4.128 20 C 0.022 3.978 21 N -0.390 5.390 22 C -0.378 4.378 23 H 0.096 0.904 24 C -0.273 4.273 25 N -0.625 5.625 26 Si 0.809 3.191 27 H -0.187 1.187 28 H -0.218 1.218 29 H -0.218 1.218 30 H 0.082 0.918 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.125 0.875 39 H 0.160 0.840 40 H 0.142 0.858 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.119 0.881 44 H 0.127 0.873 45 H 0.101 0.899 46 H 0.075 0.925 47 H 0.144 0.856 48 H 0.072 0.928 49 H 0.072 0.928 50 H 0.039 0.961 51 H 0.034 0.966 52 H 0.200 0.800 53 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.720 -23.569 16.001 28.497 hybrid contribution -0.444 1.140 -1.591 2.007 sum 0.275 -22.429 14.410 26.660 Atomic orbital electron populations 1.21786 0.95748 1.01330 1.00678 1.21536 0.95955 0.99695 0.94980 0.90736 1.21537 1.01118 0.95853 0.96116 1.21971 1.01252 0.95645 0.98293 1.22127 1.01894 0.95496 0.82668 1.48144 1.56007 1.10709 1.18863 1.20751 0.77406 0.90141 0.82217 1.90896 1.51680 1.64882 1.36257 1.21528 1.03103 0.92409 0.98550 1.22843 0.84666 0.77979 0.97896 1.88140 1.28821 1.69144 1.46334 1.22813 0.95775 0.96138 0.88375 1.22741 0.98989 0.94952 1.05286 1.22922 0.90655 1.00821 0.88213 1.87999 1.74820 1.21797 1.47629 1.21136 0.98307 0.80129 0.94529 0.90305 1.21934 1.00522 0.92966 0.97357 1.20971 0.95627 0.93602 0.87597 1.42644 1.66065 1.09829 1.20438 1.19744 1.27732 0.88389 1.01944 0.90432 1.25702 1.01398 1.02909 0.97286 1.69887 1.43743 1.37238 1.11609 0.84970 0.77112 0.79254 0.77795 1.18669 1.21783 1.21844 0.91779 0.95537 0.92655 0.90561 0.90689 0.87813 0.92035 0.89247 0.87498 0.83957 0.85771 0.93873 0.93659 0.88056 0.87336 0.89929 0.92507 0.85579 0.92820 0.92789 0.96111 0.96641 0.80019 0.94032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 8.20 71.98 0.59 -3.22 16 2 C -0.10 -2.50 2.32 -10.71 -0.02 -2.52 16 3 H 0.07 1.99 6.90 -2.39 -0.02 1.97 16 4 C -0.11 -1.69 5.43 30.62 0.17 -1.53 16 5 C -0.13 -1.61 5.74 30.67 0.18 -1.43 16 6 C 0.10 1.28 6.33 86.36 0.55 1.82 16 7 N -0.60 -14.10 2.41 -795.00 -1.92 -16.01 16 8 C 0.51 14.45 7.49 87.65 0.66 15.11 16 9 O -0.56 -22.34 10.82 10.71 0.12 -22.23 16 10 C -0.12 -2.39 4.18 29.85 0.12 -2.26 16 11 C 0.26 6.74 2.80 71.98 0.20 6.94 16 12 O -0.40 -12.22 9.77 -120.76 -1.18 -13.40 16 13 C 0.05 1.09 6.96 72.07 0.50 1.59 16 14 C -0.18 -2.97 6.35 30.77 0.20 -2.78 16 15 C 0.05 0.81 6.96 72.07 0.50 1.31 16 16 O -0.40 -8.72 10.54 -126.22 -1.33 -10.05 16 17 C 0.16 4.63 2.71 44.98 0.12 4.75 16 18 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 19 C -0.09 -3.64 2.78 30.59 0.09 -3.55 16 20 C 0.15 6.85 5.79 86.38 0.50 7.35 16 21 N -0.75 -43.64 5.60 -343.45 -1.92 -45.56 16 22 C -0.25 -15.07 9.99 84.03 0.84 -14.23 16 23 H 0.08 4.50 7.83 -2.91 -0.02 4.47 16 24 C -0.08 -5.04 5.50 84.86 0.47 -4.57 16 25 N -0.97 -64.65 13.06 21.65 0.28 -64.37 16 26 Si 0.98 48.89 29.55 68.60 2.03 50.92 16 27 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 28 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 29 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.51 16 31 H 0.03 0.93 6.33 -2.39 -0.02 0.91 16 32 H 0.05 1.48 5.97 -2.39 -0.01 1.46 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.10 0.68 8.14 -2.38 -0.02 0.67 16 36 H 0.06 0.91 6.34 -2.39 -0.02 0.89 16 37 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.11 0.90 5.96 -2.39 -0.01 0.88 16 39 H 0.14 1.98 8.11 -2.39 -0.02 1.96 16 40 H 0.12 2.09 7.48 -2.39 -0.02 2.07 16 41 H 0.04 1.28 7.95 -2.39 -0.02 1.26 16 42 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.05 2.49 6.40 -2.39 -0.02 2.47 16 49 H 0.05 2.46 5.23 -2.39 -0.01 2.45 16 50 H 0.02 0.94 6.89 -2.38 -0.02 0.93 16 51 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 52 H 0.37 23.52 7.67 -92.71 -0.71 22.81 16 53 H 0.25 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -82.93 395.83 1.91 -81.02 By element: Atomic # 1 Polarization: 36.73 SS G_CDS: 0.19 Total: 36.92 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 5.65 Total: 2.77 kcal Atomic # 7 Polarization: -122.38 SS G_CDS: -3.56 Total: -125.94 kcal Atomic # 8 Polarization: -43.29 SS G_CDS: -2.39 Total: -45.68 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 2.03 Total: 50.92 kcal Total: -82.93 1.91 -81.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488993177.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.775 kcal (2) G-P(sol) polarization free energy of solvation -82.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds