Wall clock time and date at job start Tue Mar 31 2020 23:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.52370 * 2 1 4 4 C 1.53038 * 109.49613 * 239.92195 * 2 1 3 5 5 C 1.53038 * 109.54131 * 301.41293 * 4 2 1 6 6 C 1.53194 * 109.31083 * 298.63841 * 5 4 2 7 7 N 1.46929 * 108.77842 * 54.63256 * 6 5 4 8 8 C 1.34767 * 120.62914 * 126.39260 * 7 6 5 9 9 O 1.21286 * 119.99677 * 185.40526 * 8 7 6 10 10 C 1.50699 * 120.00258 * 5.41100 * 8 7 6 11 11 C 1.53003 * 109.47011 * 179.97438 * 10 8 7 12 12 O 1.42962 * 109.47181 * 294.99846 * 11 10 8 13 13 C 1.43095 * 113.76896 * 181.20680 * 12 11 10 14 14 C 1.53258 * 108.94422 * 57.97202 * 13 12 11 15 15 C 1.53265 * 108.84277 * 305.47308 * 14 13 12 16 16 O 1.42974 * 109.47161 * 174.99487 * 11 10 8 17 17 C 1.46932 * 118.73457 * 306.39249 * 7 6 5 18 18 H 1.09004 * 109.70008 * 293.74996 * 17 7 6 19 19 C 1.53002 * 109.58182 * 173.39761 * 17 7 6 20 20 C 1.52999 * 109.46677 * 180.62070 * 19 17 7 21 21 N 1.46497 * 109.46993 * 175.08122 * 20 19 17 22 22 C 1.36932 * 120.00164 * 179.97438 * 21 20 19 23 23 H 1.08004 * 120.00266 * 0.02562 * 22 21 20 24 24 C 1.38816 * 119.99984 * 179.97438 * 22 21 20 25 25 N 1.31617 * 120.00207 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99750 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47475 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47323 * 239.99881 * 26 24 22 29 29 H 1.48502 * 109.46828 * 120.00569 * 26 24 22 30 30 H 1.09002 * 109.47405 * 299.91368 * 1 2 3 31 31 H 1.08998 * 109.47410 * 59.91588 * 1 2 3 32 32 H 1.09000 * 109.47013 * 179.91791 * 1 2 3 33 33 H 1.09003 * 109.46218 * 61.43404 * 4 2 1 34 34 H 1.08999 * 109.45992 * 181.40190 * 4 2 1 35 35 H 1.09005 * 109.49940 * 58.58422 * 5 4 2 36 36 H 1.08996 * 109.50035 * 178.65368 * 5 4 2 37 37 H 1.08995 * 109.58647 * 174.42033 * 6 5 4 38 38 H 1.09005 * 109.58187 * 294.84108 * 6 5 4 39 39 H 1.09004 * 109.47054 * 299.99358 * 10 8 7 40 40 H 1.08998 * 109.47403 * 59.99917 * 10 8 7 41 41 H 1.09003 * 109.47407 * 54.99965 * 11 10 8 42 42 H 1.09000 * 109.55954 * 298.12731 * 13 12 11 43 43 H 1.08997 * 109.64579 * 177.86021 * 13 12 11 44 44 H 1.09001 * 109.57733 * 185.67283 * 14 13 12 45 45 H 1.08994 * 109.68468 * 65.34183 * 14 13 12 46 46 H 1.09001 * 109.56029 * 294.69053 * 15 14 13 47 47 H 1.08998 * 109.55974 * 174.36384 * 15 14 13 48 48 H 1.08998 * 109.47040 * 60.62069 * 19 17 7 49 49 H 1.09008 * 109.46799 * 300.61787 * 19 17 7 50 50 H 1.08995 * 109.47381 * 55.08109 * 20 19 17 51 51 H 1.08996 * 109.47148 * 295.07630 * 20 19 17 52 52 H 0.97008 * 120.00179 * 359.97438 * 21 20 19 53 53 H 0.96994 * 119.99738 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0407 -0.7230 -1.2484 5 6 1.5030 -2.1557 -1.2662 6 6 2.0140 -2.9040 -0.0309 7 7 1.6515 -2.1382 1.1695 8 6 0.9744 -2.7220 2.1779 9 8 0.5955 -2.0571 3.1188 10 6 0.6882 -4.2010 2.1365 11 6 -0.0868 -4.6058 3.3921 12 8 0.7375 -4.4123 4.5440 13 6 0.1092 -4.7901 5.7729 14 6 -0.3004 -6.2645 5.6895 15 6 -1.1690 -6.4673 4.4431 16 8 -0.4596 -5.9830 3.2987 17 6 2.0413 -0.7238 1.2495 18 1 3.1273 -0.6442 1.2993 19 6 1.4229 -0.0913 2.4979 20 6 1.8177 1.3851 2.5704 21 7 1.1318 2.0192 3.6989 22 6 1.3325 3.3476 3.9633 23 1 1.9962 3.9282 3.3396 24 6 0.6822 3.9485 5.0324 25 7 -0.1270 3.2413 5.7923 26 14 0.9566 5.7607 5.3935 27 1 1.9049 6.3254 4.4000 28 1 1.5200 5.9136 6.7589 29 1 -0.3377 6.4838 5.3084 30 1 -0.3634 0.5125 0.8908 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6987 -0.1957 -2.1389 34 1 3.1304 -0.7445 -1.2353 35 1 0.4132 -2.1355 -1.2542 36 1 1.8476 -2.6625 -2.1675 37 1 1.5554 -3.8918 0.0135 38 1 3.0980 -3.0043 -0.0870 39 1 0.0939 -4.4315 1.2523 40 1 1.6278 -4.7520 2.0966 41 1 -0.9832 -3.9920 3.4795 42 1 -0.7754 -4.1741 5.9349 43 1 0.8067 -4.6513 6.5989 44 1 -0.8689 -6.5365 6.5789 45 1 0.5898 -6.8895 5.6198 46 1 -2.1020 -5.9148 4.5547 47 1 -1.3842 -7.5283 4.3169 48 1 1.7867 -0.6087 3.3856 49 1 0.3372 -0.1751 2.4478 50 1 1.5312 1.8837 1.6445 51 1 2.8958 1.4665 2.7083 52 1 0.5355 1.4979 4.2590 53 1 -0.2691 2.3003 5.6050 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488993180.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:24 Heat of formation + Delta-G solvation = -132.625319 kcal Electronic energy + Delta-G solvation = -32048.301639 eV Core-core repulsion = 27919.588315 eV Total energy + Delta-G solvation = -4128.713324 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.96610 -40.87100 -38.83825 -37.27203 -36.71915 -35.27406 -34.20717 -34.08109 -32.45985 -31.26550 -29.64869 -27.77004 -26.98938 -26.43857 -25.34393 -24.66712 -23.86288 -22.25333 -22.08260 -21.05302 -19.52691 -19.34395 -18.46934 -17.93682 -17.54510 -17.12970 -16.94585 -16.66014 -16.41974 -16.07079 -15.90373 -15.77813 -15.66402 -15.34244 -15.07527 -15.00999 -14.58496 -14.34496 -14.16223 -14.06079 -13.86134 -13.50765 -13.21810 -13.13187 -12.77041 -12.74383 -12.63102 -12.47221 -12.38582 -12.29968 -12.14674 -12.11743 -11.88199 -11.84734 -11.76827 -11.46710 -11.30599 -11.17626 -11.04353 -10.92538 -10.73703 -10.04841 -9.49397 -9.14155 -8.45472 -5.37911 1.54116 1.64904 1.67902 1.79444 1.80007 2.59995 2.60779 2.69726 3.36413 3.44094 3.65606 3.73094 3.73327 3.74061 3.81094 3.86834 3.95373 4.05204 4.10958 4.18953 4.20399 4.31962 4.35101 4.37917 4.39107 4.44444 4.53269 4.56420 4.63544 4.65012 4.71875 4.75950 4.77420 4.78576 4.81093 4.89944 4.96632 5.05526 5.09907 5.18781 5.22188 5.28647 5.36828 5.42191 5.53011 5.54600 5.71785 5.77592 6.10135 6.42018 6.46312 7.05085 7.24551 7.95191 8.10242 9.06338 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009006 B = 0.003518 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3108.131957 B = 7957.016073 C =10633.590932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.102 4.102 3 H 0.072 0.928 4 C -0.109 4.109 5 C -0.133 4.133 6 C 0.099 3.901 7 N -0.603 5.603 8 C 0.507 3.493 9 O -0.561 6.561 10 C -0.116 4.116 11 C 0.262 3.738 12 O -0.405 6.405 13 C 0.045 3.955 14 C -0.182 4.182 15 C 0.050 3.950 16 O -0.401 6.401 17 C 0.163 3.837 18 H 0.076 0.924 19 C -0.089 4.089 20 C 0.152 3.848 21 N -0.759 5.759 22 C -0.336 4.336 23 H 0.068 0.932 24 C -0.109 4.109 25 N -0.975 5.975 26 Si 1.139 2.861 27 H -0.269 1.269 28 H -0.289 1.289 29 H -0.288 1.288 30 H 0.023 0.977 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.086 0.914 39 H 0.144 0.856 40 H 0.125 0.875 41 H 0.044 0.956 42 H 0.045 0.955 43 H 0.101 0.899 44 H 0.109 0.891 45 H 0.082 0.918 46 H 0.057 0.943 47 H 0.127 0.873 48 H 0.049 0.951 49 H 0.057 0.943 50 H 0.026 0.974 51 H 0.009 0.991 52 H 0.356 0.644 53 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.398 -24.482 -15.548 29.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.122 4.122 3 H 0.090 0.910 4 C -0.147 4.147 5 C -0.170 4.170 6 C -0.022 4.022 7 N -0.337 5.337 8 C 0.296 3.704 9 O -0.440 6.440 10 C -0.156 4.156 11 C 0.166 3.834 12 O -0.326 6.326 13 C -0.031 4.031 14 C -0.220 4.220 15 C -0.026 4.026 16 O -0.322 6.322 17 C 0.059 3.941 18 H 0.094 0.906 19 C -0.127 4.127 20 C 0.026 3.974 21 N -0.403 5.403 22 C -0.467 4.467 23 H 0.086 0.914 24 C -0.299 4.299 25 N -0.623 5.623 26 Si 0.962 3.038 27 H -0.193 1.193 28 H -0.215 1.215 29 H -0.214 1.214 30 H 0.042 0.958 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.123 0.877 37 H 0.128 0.872 38 H 0.104 0.896 39 H 0.161 0.839 40 H 0.143 0.857 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.119 0.881 44 H 0.127 0.873 45 H 0.101 0.899 46 H 0.075 0.925 47 H 0.145 0.855 48 H 0.068 0.932 49 H 0.076 0.924 50 H 0.044 0.956 51 H 0.027 0.973 52 H 0.187 0.813 53 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 2.212 -22.815 -14.414 27.077 hybrid contribution -0.272 -1.044 0.093 1.083 sum 1.939 -23.859 -14.321 27.895 Atomic orbital electron populations 1.21786 0.95598 1.01500 1.00657 1.21534 0.96105 0.99543 0.94972 0.91001 1.21541 1.01073 0.96012 0.96045 1.21972 1.01438 0.95421 0.98208 1.22142 1.01865 0.95574 0.82641 1.48133 1.55993 1.10605 1.18924 1.20762 0.77689 0.90100 0.81874 1.90880 1.52240 1.64917 1.35949 1.21526 1.04378 0.92047 0.97620 1.22841 0.91828 0.82127 0.86565 1.88140 1.43209 1.85450 1.15769 1.22813 0.98496 0.95236 0.86578 1.22745 1.02262 0.96343 1.00641 1.22928 0.93500 1.01927 0.84250 1.88000 1.75571 1.26771 1.41864 1.21082 0.98219 0.80282 0.94474 0.90609 1.21932 1.00777 0.92605 0.97369 1.20941 0.93947 0.93111 0.89431 1.42648 1.54913 1.08351 1.34349 1.20508 1.25225 0.87776 1.13240 0.91405 1.27448 0.97161 1.10665 0.94666 1.70914 1.40819 1.08332 1.42232 0.82508 0.76129 0.69149 0.75998 1.19342 1.21531 1.21423 0.95786 0.91732 0.92189 0.90575 0.90725 0.91632 0.87678 0.87221 0.89601 0.83865 0.85722 0.93855 0.93638 0.88063 0.87292 0.89930 0.92472 0.85530 0.93190 0.92438 0.95612 0.97298 0.81325 0.95002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 8.20 71.98 0.59 -3.17 16 2 C -0.10 -2.52 2.29 -10.72 -0.02 -2.54 16 3 H 0.07 1.98 6.65 -2.39 -0.02 1.97 16 4 C -0.11 -1.69 5.43 30.62 0.17 -1.53 16 5 C -0.13 -1.50 5.74 30.67 0.18 -1.33 16 6 C 0.10 1.25 6.33 86.36 0.55 1.80 16 7 N -0.60 -14.06 2.41 -795.01 -1.92 -15.97 16 8 C 0.51 14.36 7.49 87.66 0.66 15.01 16 9 O -0.56 -22.25 10.82 10.72 0.12 -22.13 16 10 C -0.12 -2.35 4.19 29.85 0.13 -2.23 16 11 C 0.26 6.66 2.80 71.98 0.20 6.86 16 12 O -0.40 -12.22 9.77 -120.76 -1.18 -13.40 16 13 C 0.04 1.08 6.96 72.07 0.50 1.58 16 14 C -0.18 -2.95 6.35 30.77 0.20 -2.75 16 15 C 0.05 0.80 6.96 72.07 0.50 1.30 16 16 O -0.40 -8.59 10.54 -126.22 -1.33 -9.92 16 17 C 0.16 4.70 2.72 44.97 0.12 4.82 16 18 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 19 C -0.09 -3.62 2.75 30.59 0.08 -3.53 16 20 C 0.15 7.15 6.05 86.38 0.52 7.68 16 21 N -0.76 -44.53 5.60 -343.47 -1.92 -46.45 16 22 C -0.34 -20.93 9.99 84.04 0.84 -20.09 16 23 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 24 C -0.11 -6.86 5.50 84.86 0.47 -6.40 16 25 N -0.97 -66.31 13.70 21.65 0.30 -66.01 16 26 Si 1.14 55.43 29.92 68.60 2.05 57.48 16 27 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 28 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 29 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 30 H 0.02 0.84 6.35 -2.39 -0.02 0.83 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.51 5.97 -2.39 -0.01 1.49 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.07 0.86 6.33 -2.38 -0.02 0.85 16 36 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.11 0.84 5.96 -2.39 -0.01 0.83 16 38 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.14 1.91 7.47 -2.38 -0.02 1.89 16 40 H 0.12 2.09 8.12 -2.39 -0.02 2.07 16 41 H 0.04 1.26 7.95 -2.39 -0.02 1.24 16 42 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.11 1.21 8.14 -2.39 -0.02 1.20 16 45 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.05 2.34 6.49 -2.39 -0.02 2.32 16 49 H 0.06 2.60 5.20 -2.38 -0.01 2.58 16 50 H 0.03 1.18 6.32 -2.39 -0.02 1.16 16 51 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 52 H 0.36 22.25 6.50 -92.70 -0.60 21.64 16 53 H 0.24 16.66 6.77 -92.71 -0.63 16.04 16 Total: -1.00 -85.65 393.60 2.23 -83.42 By element: Atomic # 1 Polarization: 37.06 SS G_CDS: 0.44 Total: 37.50 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 5.67 Total: -4.52 kcal Atomic # 7 Polarization: -124.89 SS G_CDS: -3.54 Total: -128.44 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -2.39 Total: -45.45 kcal Atomic # 14 Polarization: 55.43 SS G_CDS: 2.05 Total: 57.48 kcal Total: -85.65 2.23 -83.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488993180.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.201 kcal (2) G-P(sol) polarization free energy of solvation -85.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds