Wall clock time and date at job start Wed Apr 1 2020 00:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 114.00278 * 2 1 4 4 C 1.53002 * 109.47373 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.54142 * 59.82185 * 4 3 2 6 6 O 1.21282 * 120.00222 * 120.00386 * 5 4 3 7 7 N 1.34781 * 120.00177 * 300.00227 * 5 4 3 8 8 C 1.46500 * 119.99832 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.49869 * 325.00189 * 8 7 5 10 10 C 1.53043 * 109.49803 * 85.06852 * 8 7 5 11 11 C 1.53038 * 109.54026 * 58.57810 * 10 8 7 12 12 C 1.53199 * 109.31044 * 61.37048 * 11 10 8 13 13 N 1.46927 * 108.77375 * 305.36390 * 12 11 10 14 14 C 1.36936 * 120.63197 * 233.62693 * 13 12 11 15 15 H 1.08005 * 119.99989 * 151.60624 * 14 13 12 16 16 C 1.38803 * 120.00097 * 331.61279 * 14 13 12 17 17 N 1.31618 * 120.00477 * 160.47723 * 16 14 13 18 18 Si 1.86805 * 119.99838 * 340.47955 * 16 14 13 19 19 H 1.48503 * 109.47393 * 94.90843 * 18 16 14 20 20 H 1.48506 * 109.47067 * 214.90729 * 18 16 14 21 21 H 1.48495 * 109.47096 * 334.90640 * 18 16 14 22 22 C 1.46997 * 118.75519 * 53.60630 * 13 12 11 23 23 H 1.09005 * 109.58036 * 66.16993 * 22 13 12 24 24 C 1.53000 * 109.63359 * 186.61809 * 22 13 12 25 25 C 1.53184 * 109.54316 * 299.56008 * 4 3 2 26 26 C 1.53088 * 109.16140 * 183.15140 * 25 4 3 27 27 O 1.42897 * 109.41687 * 57.60882 * 26 25 4 28 28 C 1.42908 * 114.09712 * 298.83709 * 27 26 25 29 29 C 1.53092 * 109.41163 * 61.15908 * 28 27 26 30 30 H 1.09001 * 109.47120 * 300.00051 * 1 2 3 31 31 H 1.08998 * 109.47517 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47306 * 59.99566 * 1 2 3 33 33 H 1.08995 * 109.47201 * 300.00068 * 3 2 1 34 34 H 1.08996 * 109.47001 * 60.00306 * 3 2 1 35 35 H 0.96996 * 119.99957 * 359.97438 * 7 5 4 36 36 H 1.08997 * 109.46392 * 178.60709 * 10 8 7 37 37 H 1.09005 * 109.45959 * 298.56374 * 10 8 7 38 38 H 1.09002 * 109.49915 * 181.31598 * 11 10 8 39 39 H 1.08997 * 109.50216 * 301.41858 * 11 10 8 40 40 H 1.09001 * 109.58541 * 65.14931 * 12 11 10 41 41 H 1.08994 * 109.58776 * 185.57648 * 12 11 10 42 42 H 0.96996 * 120.00303 * 179.97438 * 17 16 14 43 43 H 1.08991 * 109.47747 * 179.26794 * 24 22 13 44 44 H 1.09001 * 109.47251 * 299.27703 * 24 22 13 45 45 H 1.09006 * 109.46804 * 59.26660 * 24 22 13 46 46 H 1.09004 * 109.52068 * 303.05525 * 25 4 3 47 47 H 1.08996 * 109.52263 * 63.24237 * 25 4 3 48 48 H 1.08995 * 109.48101 * 297.61881 * 26 25 4 49 49 H 1.09006 * 109.47869 * 177.59217 * 26 25 4 50 50 H 1.08993 * 109.48073 * 301.18010 * 28 27 26 51 51 H 1.09004 * 109.47986 * 181.14338 * 28 27 26 52 52 H 1.08996 * 109.52015 * 182.48189 * 29 28 27 53 53 H 1.09007 * 109.57382 * 62.33194 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9811 0.4333 -1.2287 6 8 4.7228 0.9638 -2.0283 7 7 3.5554 -0.8282 -1.4384 8 6 3.9883 -1.5582 -2.6325 9 1 4.0798 -0.8656 -3.4691 10 6 5.3430 -2.2180 -2.3648 11 6 5.2236 -3.1654 -1.1689 12 6 4.2064 -4.2642 -1.4927 13 7 2.9406 -3.6341 -1.8921 14 6 1.7680 -3.9676 -1.2686 15 1 0.9657 -3.2473 -1.2062 16 6 1.6104 -5.2315 -0.7168 17 7 0.6835 -5.4412 0.1938 18 14 2.7140 -6.6349 -1.2666 19 1 3.8626 -6.7563 -0.3332 20 1 1.9401 -7.9023 -1.2666 21 1 3.2165 -6.3617 -2.6369 22 6 2.9567 -2.6383 -2.9733 23 1 3.2302 -3.1218 -3.9112 24 6 1.5720 -2.0013 -3.1061 25 6 3.9906 0.4340 1.2547 26 6 5.5204 0.3868 1.2851 27 8 6.0375 1.7185 1.2521 28 6 5.6837 2.4529 0.0782 29 6 4.1603 2.5830 -0.0006 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 -0.8899 33 1 1.6886 1.8463 -0.8899 34 1 1.6887 1.8463 0.8900 35 1 2.9626 -1.2526 -0.7987 36 1 5.6528 -2.7813 -3.2450 37 1 6.0844 -1.4493 -2.1465 38 1 6.1943 -3.6171 -0.9643 39 1 4.8900 -2.6071 -0.2943 40 1 4.5817 -4.8803 -2.3099 41 1 4.0440 -4.8833 -0.6104 42 1 0.5732 -6.3244 0.5792 43 1 1.5901 -1.2543 -3.8996 44 1 0.8395 -2.7712 -3.3485 45 1 1.2996 -1.5245 -2.1644 46 1 3.6244 0.9515 2.1414 47 1 3.5951 -0.5816 1.2353 48 1 5.8843 -0.1660 0.4191 49 1 5.8508 -0.1089 2.1980 50 1 6.0496 1.9271 -0.8035 51 1 6.1316 3.4457 0.1217 52 1 3.8863 3.1045 -0.9177 53 1 3.7967 3.1445 0.8601 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507372368.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:32 Heat of formation + Delta-G solvation = -125.018696 kcal Electronic energy + Delta-G solvation = -34400.920037 eV Core-core repulsion = 30272.536561 eV Total energy + Delta-G solvation = -4128.383476 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.05371 -40.19865 -38.72900 -38.61706 -35.60758 -35.16743 -34.13350 -33.44273 -32.15547 -31.42918 -29.12237 -28.02217 -26.92904 -26.63068 -24.94213 -24.49943 -23.89069 -23.01637 -22.28414 -20.58740 -20.22216 -18.35372 -17.93926 -17.47683 -17.39972 -17.15698 -16.90265 -16.69754 -16.54426 -16.13906 -15.77061 -15.62150 -15.59166 -15.21892 -15.08301 -14.76095 -14.48741 -14.38155 -14.21759 -13.80416 -13.50415 -13.35271 -13.24173 -13.13481 -13.10362 -12.89220 -12.70734 -12.48810 -12.34613 -12.22869 -12.16091 -12.10429 -11.89463 -11.62893 -11.56439 -11.47247 -11.33377 -11.17330 -10.75771 -10.59204 -10.53983 -10.26758 -9.77951 -8.81563 -8.03870 -5.35221 1.33997 1.46227 1.52328 1.71428 2.37351 2.50209 2.73809 2.95525 3.13461 3.34072 3.58459 3.63388 3.84218 3.91300 4.02448 4.02575 4.08689 4.11279 4.23716 4.25880 4.36419 4.44333 4.51741 4.54417 4.57212 4.58248 4.63432 4.65355 4.66357 4.72180 4.79657 4.84205 4.85963 4.88474 4.93628 5.00094 5.01535 5.05504 5.06919 5.09664 5.16708 5.23212 5.30214 5.39669 5.53868 5.78918 5.99845 6.22409 6.24160 6.29527 6.83770 7.00316 7.42827 7.73710 8.13790 9.14644 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.004873 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.380485 B = 5744.359048 C = 6300.025205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.403 6.403 3 C 0.074 3.926 4 C -0.076 4.076 5 C 0.521 3.479 6 O -0.580 6.580 7 N -0.687 5.687 8 C 0.136 3.864 9 H 0.081 0.919 10 C -0.115 4.115 11 C -0.122 4.122 12 C 0.122 3.878 13 N -0.608 5.608 14 C -0.221 4.221 15 H 0.076 0.924 16 C -0.029 4.029 17 N -0.953 5.953 18 Si 0.929 3.071 19 H -0.286 1.286 20 H -0.322 1.322 21 H -0.263 1.263 22 C 0.162 3.838 23 H 0.049 0.951 24 C -0.130 4.130 25 C -0.133 4.133 26 C 0.060 3.940 27 O -0.394 6.394 28 C 0.050 3.950 29 C -0.120 4.120 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.415 0.585 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.030 0.970 41 H 0.049 0.951 42 H 0.255 0.745 43 H 0.062 0.938 44 H 0.045 0.955 45 H 0.059 0.941 46 H 0.096 0.904 47 H 0.072 0.928 48 H 0.032 0.968 49 H 0.109 0.891 50 H 0.054 0.946 51 H 0.111 0.889 52 H 0.083 0.917 53 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.527 15.937 -0.397 16.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.322 6.322 3 C -0.003 4.003 4 C -0.079 4.079 5 C 0.307 3.693 6 O -0.462 6.462 7 N -0.339 5.339 8 C 0.029 3.971 9 H 0.098 0.902 10 C -0.153 4.153 11 C -0.161 4.161 12 C -0.003 4.003 13 N -0.333 5.333 14 C -0.351 4.351 15 H 0.093 0.907 16 C -0.224 4.224 17 N -0.600 5.600 18 Si 0.761 3.239 19 H -0.214 1.214 20 H -0.252 1.252 21 H -0.188 1.188 22 C 0.056 3.944 23 H 0.067 0.933 24 C -0.188 4.188 25 C -0.171 4.171 26 C -0.017 4.017 27 O -0.313 6.313 28 C -0.026 4.026 29 C -0.158 4.158 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.254 0.746 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.048 0.952 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.115 0.885 47 H 0.091 0.909 48 H 0.050 0.950 49 H 0.127 0.873 50 H 0.072 0.928 51 H 0.129 0.871 52 H 0.101 0.899 53 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.165 16.080 -0.750 17.238 hybrid contribution -0.481 -1.594 -0.096 1.668 sum 5.684 14.486 -0.846 15.584 Atomic orbital electron populations 1.22740 0.79499 1.02764 1.00794 1.87813 1.21197 1.27694 1.95479 1.22544 0.90200 0.85438 1.02129 1.20983 0.95902 0.97328 0.93683 1.20616 0.79704 0.81832 0.87102 1.90579 1.38298 1.69073 1.48208 1.46145 1.49052 1.13523 1.25185 1.21367 0.94349 0.93179 0.88211 0.90150 1.21731 0.96569 0.98216 0.98830 1.21840 0.98741 0.97257 0.98297 1.21368 0.86686 0.94846 0.97427 1.44556 1.02793 1.46992 1.38936 1.18868 0.93544 0.95618 1.27050 0.90664 1.25729 0.98254 0.99184 0.99209 1.69913 1.38228 1.22458 1.29433 0.86187 0.78106 0.80051 0.79583 1.21397 1.25177 1.18765 1.20903 0.94799 0.88437 0.90285 0.93296 1.21728 0.95868 0.99580 1.01583 1.22136 0.96505 1.01525 0.96917 1.22593 0.92901 0.83971 1.02186 1.87869 1.75022 1.25812 1.42554 1.22841 0.94493 0.97458 0.87824 1.21940 0.96255 0.93343 1.04225 0.92323 0.90946 0.93207 0.92479 0.89921 0.74553 0.90572 0.92434 0.90878 0.92813 0.95246 0.93326 0.93549 0.91904 0.93573 0.92249 0.88506 0.90928 0.95001 0.87344 0.92821 0.87125 0.89851 0.88343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.92 11.01 113.37 1.25 2.17 16 2 O -0.40 -11.11 7.33 -148.98 -1.09 -12.20 16 3 C 0.07 1.61 4.80 71.98 0.35 1.95 16 4 C -0.08 -1.83 0.53 -52.81 -0.03 -1.86 16 5 C 0.52 15.70 5.12 87.66 0.45 16.15 16 6 O -0.58 -19.78 13.51 -3.04 -0.04 -19.82 16 7 N -0.69 -21.96 2.99 -442.15 -1.32 -23.28 16 8 C 0.14 4.38 2.32 45.07 0.10 4.48 16 9 H 0.08 2.58 7.58 -2.39 -0.02 2.56 16 10 C -0.11 -3.53 5.58 30.62 0.17 -3.36 16 11 C -0.12 -4.07 5.93 30.67 0.18 -3.89 16 12 C 0.12 4.91 4.19 86.36 0.36 5.27 16 13 N -0.61 -25.89 2.42 -675.05 -1.63 -27.52 16 14 C -0.22 -11.23 9.07 84.03 0.76 -10.47 16 15 H 0.08 4.07 6.36 -2.91 -0.02 4.05 16 16 C -0.03 -1.62 5.24 84.86 0.44 -1.17 16 17 N -0.95 -56.79 13.97 21.65 0.30 -56.48 16 18 Si 0.93 45.28 24.35 68.60 1.67 46.96 16 19 H -0.29 -13.55 6.72 99.48 0.67 -12.88 16 20 H -0.32 -16.39 7.11 99.48 0.71 -15.68 16 21 H -0.26 -12.29 6.44 99.48 0.64 -11.65 16 22 C 0.16 5.79 3.20 44.96 0.14 5.93 16 23 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 24 C -0.13 -4.48 7.72 71.98 0.56 -3.92 16 25 C -0.13 -3.22 4.67 30.69 0.14 -3.07 16 26 C 0.06 1.52 6.62 72.01 0.48 1.99 16 27 O -0.39 -10.18 10.77 -148.98 -1.60 -11.79 16 28 C 0.05 1.17 6.55 72.01 0.47 1.64 16 29 C -0.12 -2.46 4.56 30.68 0.14 -2.32 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.41 14.68 5.14 -92.71 -0.48 14.20 16 36 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 38 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.05 1.89 7.53 -2.39 -0.02 1.87 16 40 H 0.03 1.17 6.95 -2.39 -0.02 1.16 16 41 H 0.05 2.20 4.60 -2.39 -0.01 2.19 16 42 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 43 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.05 1.73 7.66 -2.39 -0.02 1.71 16 45 H 0.06 2.15 6.09 -2.38 -0.01 2.13 16 46 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.07 2.06 7.17 -2.39 -0.02 2.04 16 48 H 0.03 0.92 7.38 -2.39 -0.02 0.90 16 49 H 0.11 2.40 8.14 -2.38 -0.02 2.38 16 50 H 0.05 1.54 5.82 -2.39 -0.01 1.53 16 51 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 52 H 0.08 1.69 8.02 -2.39 -0.02 1.67 16 53 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 Total: -1.00 -63.01 385.33 2.57 -60.44 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: 0.31 Total: 34.16 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 5.97 Total: 9.53 kcal Atomic # 7 Polarization: -104.63 SS G_CDS: -2.65 Total: -107.28 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: -2.74 Total: -43.80 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.67 Total: 46.96 kcal Total: -63.01 2.57 -60.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507372368.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.579 kcal (2) G-P(sol) polarization free energy of solvation -63.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds