Wall clock time and date at job start Wed Apr 1 2020 00:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42891 * 114.00203 * 2 1 4 4 C 1.53003 * 109.47184 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.54071 * 59.82425 * 4 3 2 6 6 O 1.21289 * 119.99738 * 120.17319 * 5 4 3 7 7 N 1.34772 * 120.00547 * 300.17752 * 5 4 3 8 8 C 1.46498 * 120.00404 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.49555 * 325.06554 * 8 7 5 10 10 C 1.53041 * 109.49695 * 85.16373 * 8 7 5 11 11 C 1.53040 * 109.53646 * 181.31665 * 10 8 7 12 12 C 1.53189 * 109.31408 * 298.63426 * 11 10 8 13 13 N 1.46923 * 108.77879 * 54.63284 * 12 11 10 14 14 C 1.36939 * 120.63199 * 126.41239 * 13 12 11 15 15 H 1.07998 * 120.00053 * 208.64009 * 14 13 12 16 16 C 1.38809 * 119.99920 * 28.63615 * 14 13 12 17 17 N 1.31619 * 120.00122 * 14.71530 * 16 14 13 18 18 Si 1.86800 * 120.00169 * 194.72115 * 16 14 13 19 19 H 1.48502 * 109.46947 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47617 * 120.00073 * 18 16 14 21 21 H 1.48509 * 109.46990 * 240.00123 * 18 16 14 22 22 C 1.46928 * 118.74011 * 306.39691 * 13 12 11 23 23 H 1.09003 * 109.58573 * 293.81767 * 22 13 12 24 24 C 1.53003 * 109.70511 * 173.46109 * 22 13 12 25 25 C 1.53175 * 109.54381 * 180.02562 * 4 3 2 26 26 C 1.53091 * 109.16566 * 176.84833 * 25 4 3 27 27 O 1.42905 * 109.42496 * 302.38877 * 26 25 4 28 28 C 1.42922 * 114.08287 * 61.14608 * 27 26 25 29 29 C 1.53093 * 109.42572 * 298.85045 * 28 27 26 30 30 H 1.09000 * 109.47316 * 299.99780 * 1 2 3 31 31 H 1.09007 * 109.46720 * 59.99909 * 1 2 3 32 32 H 1.09002 * 109.47367 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.47279 * 59.99873 * 3 2 1 34 34 H 1.08997 * 109.47557 * 300.00018 * 3 2 1 35 35 H 0.97001 * 119.99633 * 0.02562 * 7 5 4 36 36 H 1.09004 * 109.45430 * 301.33395 * 10 8 7 37 37 H 1.08997 * 109.46007 * 61.29677 * 10 8 7 38 38 H 1.09005 * 109.49776 * 178.68063 * 11 10 8 39 39 H 1.08997 * 109.50046 * 58.58477 * 11 10 8 40 40 H 1.08998 * 109.58623 * 294.84853 * 12 11 10 41 41 H 1.09004 * 109.70775 * 174.49229 * 12 11 10 42 42 H 0.96997 * 120.00560 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.46842 * 300.63987 * 24 22 13 44 44 H 1.08999 * 109.46875 * 60.64004 * 24 22 13 45 45 H 1.09001 * 109.46912 * 180.63852 * 24 22 13 46 46 H 1.09004 * 109.52428 * 56.94213 * 25 4 3 47 47 H 1.09000 * 109.57775 * 296.78660 * 25 4 3 48 48 H 1.09004 * 109.47794 * 62.37470 * 26 25 4 49 49 H 1.08994 * 109.48584 * 182.39739 * 26 25 4 50 50 H 1.09007 * 109.47446 * 178.86622 * 28 27 26 51 51 H 1.08999 * 109.48970 * 58.84671 * 28 27 26 52 52 H 1.09000 * 109.52333 * 297.70976 * 29 28 27 53 53 H 1.08999 * 109.52516 * 177.51653 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9821 0.4328 -1.2268 6 8 4.7269 0.9621 -2.0244 7 7 3.5538 -0.8274 -1.4383 8 6 3.9876 -1.5579 -2.6318 9 1 4.0839 -0.8648 -3.4675 10 6 5.3389 -2.2231 -2.3605 11 6 5.8084 -2.9593 -3.6174 12 6 4.7947 -4.0512 -3.9735 13 7 3.4640 -3.4402 -4.0937 14 6 2.7138 -3.6190 -5.2253 15 1 2.0048 -2.8628 -5.5282 16 6 2.8647 -4.7722 -5.9831 17 7 3.4972 -5.8116 -5.4809 18 14 2.1704 -4.8490 -7.7155 19 1 1.5097 -3.5596 -8.0415 20 1 3.2718 -5.0990 -8.6797 21 1 1.1771 -5.9496 -7.8024 22 6 2.9532 -2.6341 -2.9766 23 1 2.7886 -3.2738 -2.1096 24 6 1.6359 -1.9687 -3.3806 25 6 4.1603 2.5830 0.0013 26 6 5.6836 2.4529 0.0814 27 8 6.0368 1.7186 1.2554 28 6 5.5194 0.3867 1.2879 29 6 3.9895 0.4338 1.2563 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6887 1.8463 -0.8899 35 1 2.9578 -1.2505 -0.8006 36 1 6.0708 -1.4617 -2.0909 37 1 5.2356 -2.9339 -1.5407 38 1 6.7818 -3.4132 -3.4310 39 1 5.8880 -2.2534 -4.4441 40 1 4.7803 -4.8066 -3.1878 41 1 5.0710 -4.5145 -4.9207 42 1 3.6023 -6.6175 -6.0102 43 1 1.8017 -1.3334 -4.2507 44 1 0.9015 -2.7360 -3.6254 45 1 1.2663 -1.3628 -2.5533 46 1 3.7969 3.1440 0.8623 47 1 3.8872 3.1055 -0.9155 48 1 6.0504 1.9272 -0.8002 49 1 6.1315 3.4456 0.1252 50 1 5.8490 -0.1090 2.2011 51 1 5.8840 -0.1663 0.4223 52 1 3.6226 0.9514 2.1427 53 1 3.5941 -0.5817 1.2365 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507372369.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:36 Heat of formation + Delta-G solvation = -133.217977 kcal Electronic energy + Delta-G solvation = -33197.004020 eV Core-core repulsion = 29068.264997 eV Total energy + Delta-G solvation = -4128.739024 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.04569 -40.00865 -38.75092 -38.63520 -35.87266 -35.20154 -34.18624 -33.39993 -32.05170 -30.84683 -29.12714 -27.92010 -26.97529 -26.79813 -24.89423 -24.49443 -23.64413 -22.59589 -22.28917 -21.19435 -20.24752 -18.29802 -17.94894 -17.51645 -17.42329 -17.07937 -16.87007 -16.62697 -16.40655 -16.08585 -15.68561 -15.63888 -15.54651 -15.22490 -15.10133 -14.71249 -14.51812 -14.40048 -14.24301 -13.44432 -13.37809 -13.30797 -13.15455 -13.10630 -12.90141 -12.83358 -12.71169 -12.50308 -12.36061 -12.32958 -12.19197 -11.99630 -11.82078 -11.78872 -11.64790 -11.59238 -11.43869 -11.17350 -10.76997 -10.55978 -10.53179 -10.29695 -9.88536 -8.65621 -7.84893 -5.30928 1.45248 1.48159 1.57293 1.66258 2.19453 2.53792 2.69815 2.95826 3.30464 3.53409 3.56877 3.66918 3.83213 3.88226 3.99268 4.06094 4.08547 4.21125 4.27408 4.35215 4.38277 4.43840 4.52713 4.58295 4.62061 4.63062 4.65656 4.67930 4.71879 4.77171 4.80503 4.87175 4.89557 4.92771 5.00321 5.01474 5.06043 5.08507 5.12556 5.16959 5.24885 5.31286 5.43556 5.53081 5.65996 5.70149 5.77614 6.17808 6.23146 6.41954 6.71301 7.16576 7.37447 7.86948 8.38476 9.21984 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016257 B = 0.003517 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.939453 B = 7960.496594 C = 8865.607690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.406 6.406 3 C 0.078 3.922 4 C -0.074 4.074 5 C 0.520 3.480 6 O -0.581 6.581 7 N -0.695 5.695 8 C 0.147 3.853 9 H 0.053 0.947 10 C -0.107 4.107 11 C -0.129 4.129 12 C 0.175 3.825 13 N -0.600 5.600 14 C -0.251 4.251 15 H 0.072 0.928 16 C -0.049 4.049 17 N -0.934 5.934 18 Si 0.961 3.039 19 H -0.269 1.269 20 H -0.293 1.293 21 H -0.291 1.291 22 C 0.168 3.832 23 H 0.028 0.972 24 C -0.123 4.123 25 C -0.122 4.122 26 C 0.049 3.951 27 O -0.394 6.394 28 C 0.053 3.947 29 C -0.130 4.130 30 H 0.061 0.939 31 H 0.041 0.959 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.051 0.949 35 H 0.413 0.587 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.043 0.957 40 H 0.003 0.997 41 H 0.058 0.942 42 H 0.248 0.752 43 H 0.037 0.963 44 H 0.048 0.952 45 H 0.074 0.926 46 H 0.104 0.896 47 H 0.077 0.923 48 H 0.047 0.953 49 H 0.108 0.892 50 H 0.116 0.884 51 H 0.027 0.973 52 H 0.104 0.896 53 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.445 15.713 17.508 23.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.325 6.325 3 C 0.001 3.999 4 C -0.077 4.077 5 C 0.307 3.693 6 O -0.462 6.462 7 N -0.347 5.347 8 C 0.040 3.960 9 H 0.071 0.929 10 C -0.145 4.145 11 C -0.169 4.169 12 C 0.050 3.950 13 N -0.324 5.324 14 C -0.381 4.381 15 H 0.089 0.911 16 C -0.244 4.244 17 N -0.580 5.580 18 Si 0.790 3.210 19 H -0.193 1.193 20 H -0.220 1.220 21 H -0.218 1.218 22 C 0.061 3.939 23 H 0.045 0.955 24 C -0.180 4.180 25 C -0.160 4.160 26 C -0.027 4.027 27 O -0.313 6.313 28 C -0.024 4.024 29 C -0.168 4.168 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.069 0.931 35 H 0.252 0.748 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.061 0.939 40 H 0.021 0.979 41 H 0.076 0.924 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.067 0.933 45 H 0.093 0.907 46 H 0.123 0.877 47 H 0.095 0.905 48 H 0.065 0.935 49 H 0.126 0.874 50 H 0.133 0.867 51 H 0.045 0.955 52 H 0.123 0.877 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.726 15.828 17.007 23.393 hybrid contribution -0.678 -0.739 -1.438 1.754 sum -3.404 15.089 15.569 21.947 Atomic orbital electron populations 1.22882 0.79065 1.03775 1.00845 1.87686 1.21568 1.27678 1.95561 1.22500 0.89635 0.85483 1.02309 1.21005 0.96243 0.97020 0.93450 1.20861 0.79524 0.81627 0.87281 1.90634 1.38058 1.68940 1.48565 1.46043 1.49471 1.14226 1.24916 1.21246 0.94597 0.93003 0.87120 0.92859 1.21659 0.96353 0.98628 0.97882 1.22020 0.99211 0.98631 0.97043 1.20651 0.83526 0.91645 0.99196 1.44283 1.15034 1.58091 1.14969 1.19489 1.18508 0.99888 1.00265 0.91068 1.25734 1.01285 0.94746 1.02608 1.70162 1.47802 1.03287 1.36789 0.85303 0.77411 0.77548 0.80785 1.19313 1.22012 1.21821 1.20657 0.92333 0.90511 0.90379 0.95462 1.21679 0.96293 0.99515 1.00543 1.21954 0.96057 0.93798 1.04219 1.22803 0.94774 0.97386 0.87768 1.87877 1.75263 1.26055 1.42151 1.22715 0.93520 0.83811 1.02321 1.22180 0.95967 1.02193 0.96461 0.92075 0.94072 0.88930 0.89101 0.93114 0.74817 0.93016 0.91812 0.91043 0.93864 0.97916 0.92360 0.94241 0.94419 0.93321 0.90720 0.87715 0.90476 0.93452 0.87435 0.86651 0.95503 0.87715 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.41 -6.98 7.61 -148.98 -1.13 -8.11 16 3 C 0.08 1.21 4.80 71.98 0.35 1.55 16 4 C -0.07 -1.45 0.53 -52.81 -0.03 -1.48 16 5 C 0.52 14.87 5.12 87.66 0.45 15.31 16 6 O -0.58 -21.07 13.51 -3.06 -0.04 -21.11 16 7 N -0.69 -20.18 4.09 -442.16 -1.81 -21.99 16 8 C 0.15 5.40 2.00 45.07 0.09 5.49 16 9 H 0.05 2.30 7.58 -2.39 -0.02 2.29 16 10 C -0.11 -3.86 5.46 30.62 0.17 -3.69 16 11 C -0.13 -5.24 6.08 30.67 0.19 -5.05 16 12 C 0.18 8.60 5.29 86.36 0.46 9.05 16 13 N -0.60 -29.88 2.99 -675.22 -2.02 -31.90 16 14 C -0.25 -13.61 8.63 84.03 0.73 -12.88 16 15 H 0.07 3.77 6.20 -2.91 -0.02 3.75 16 16 C -0.05 -2.70 4.97 84.86 0.42 -2.27 16 17 N -0.93 -54.82 11.09 21.65 0.24 -54.58 16 18 Si 0.96 45.03 29.58 68.60 2.03 47.05 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 20 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 21 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 22 C 0.17 6.81 3.03 44.98 0.14 6.95 16 23 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 24 C -0.12 -4.53 7.84 71.98 0.56 -3.97 16 25 C -0.12 -2.25 4.56 30.68 0.14 -2.11 16 26 C 0.05 1.10 6.55 72.01 0.47 1.57 16 27 O -0.39 -9.21 10.77 -148.98 -1.60 -10.82 16 28 C 0.05 1.09 6.62 72.01 0.48 1.56 16 29 C -0.13 -2.18 4.67 30.68 0.14 -2.04 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.04 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.41 10.63 5.97 -92.71 -0.55 10.07 16 36 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 39 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 41 H 0.06 3.24 6.01 -2.39 -0.01 3.22 16 42 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 43 H 0.04 1.48 7.41 -2.39 -0.02 1.46 16 44 H 0.05 1.90 7.66 -2.39 -0.02 1.89 16 45 H 0.07 2.24 7.78 -2.39 -0.02 2.22 16 46 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 47 H 0.08 1.51 8.03 -2.39 -0.02 1.49 16 48 H 0.05 1.39 5.81 -2.38 -0.01 1.37 16 49 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 50 H 0.12 1.87 8.14 -2.38 -0.02 1.85 16 51 H 0.03 0.68 7.38 -2.39 -0.02 0.66 16 52 H 0.10 1.31 8.14 -2.39 -0.02 1.30 16 53 H 0.09 1.47 7.18 -2.39 -0.02 1.46 16 Total: -1.00 -67.92 395.57 1.99 -65.93 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 0.33 Total: 25.90 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 5.99 Total: 9.63 kcal Atomic # 7 Polarization: -104.88 SS G_CDS: -3.59 Total: -108.47 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -2.78 Total: -40.05 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -67.92 1.99 -65.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507372369.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.288 kcal (2) G-P(sol) polarization free energy of solvation -67.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds