Wall clock time and date at job start Wed Apr 1 2020 00:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 114.00371 * 2 1 4 4 C 1.52991 * 109.47735 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.54593 * 300.00315 * 4 3 2 6 6 O 1.21274 * 119.99785 * 239.81985 * 5 4 3 7 7 N 1.34777 * 119.99931 * 59.81725 * 5 4 3 8 8 C 1.46498 * 120.00242 * 180.02562 * 7 5 4 9 9 H 1.09003 * 109.51826 * 34.91651 * 8 7 5 10 10 C 1.53045 * 109.49700 * 274.84364 * 8 7 5 11 11 C 1.53035 * 109.53666 * 178.68434 * 10 8 7 12 12 C 1.53189 * 109.31823 * 61.36002 * 11 10 8 13 13 N 1.46931 * 108.77449 * 305.36476 * 12 11 10 14 14 C 1.36932 * 120.62999 * 233.58646 * 13 12 11 15 15 H 1.08001 * 119.99806 * 150.86831 * 14 13 12 16 16 C 1.38809 * 120.00102 * 330.86088 * 14 13 12 17 17 N 1.31617 * 120.00289 * 343.82467 * 16 14 13 18 18 Si 1.86807 * 119.99882 * 163.82004 * 16 14 13 19 19 H 1.48500 * 109.46985 * 94.31616 * 18 16 14 20 20 H 1.48503 * 109.46965 * 214.30930 * 18 16 14 21 21 H 1.48493 * 109.47177 * 334.31454 * 18 16 14 22 22 C 1.46932 * 118.73612 * 53.60527 * 13 12 11 23 23 H 1.09001 * 109.58154 * 66.32634 * 22 13 12 24 24 C 1.52999 * 109.58441 * 186.60445 * 22 13 12 25 25 C 1.53186 * 109.61415 * 60.22434 * 4 3 2 26 26 C 1.53093 * 109.15981 * 176.89363 * 25 4 3 27 27 O 1.42902 * 109.41606 * 302.38403 * 26 25 4 28 28 C 1.42907 * 114.09269 * 61.16883 * 27 26 25 29 29 C 1.53098 * 109.41050 * 298.83397 * 28 27 26 30 30 H 1.09006 * 109.47212 * 59.99850 * 1 2 3 31 31 H 1.09004 * 109.47110 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46953 * 299.99794 * 1 2 3 33 33 H 1.09001 * 109.46852 * 59.99752 * 3 2 1 34 34 H 1.09003 * 109.46805 * 300.00335 * 3 2 1 35 35 H 0.97000 * 119.99662 * 0.02562 * 7 5 4 36 36 H 1.09000 * 109.46242 * 58.65481 * 10 8 7 37 37 H 1.09001 * 109.44352 * 298.69399 * 10 8 7 38 38 H 1.09007 * 109.49345 * 301.40490 * 11 10 8 39 39 H 1.08996 * 109.52350 * 181.33436 * 11 10 8 40 40 H 1.08994 * 109.59056 * 185.58149 * 12 11 10 41 41 H 1.09001 * 109.58447 * 65.15184 * 12 11 10 42 42 H 0.96996 * 120.00459 * 179.97438 * 17 16 14 43 43 H 1.08994 * 109.47074 * 59.99990 * 24 22 13 44 44 H 1.09005 * 109.46891 * 300.00344 * 24 22 13 45 45 H 1.09002 * 109.47189 * 180.02562 * 24 22 13 46 46 H 1.08997 * 109.51842 * 296.79407 * 25 4 3 47 47 H 1.08993 * 109.52393 * 56.98773 * 25 4 3 48 48 H 1.09008 * 109.47528 * 182.40597 * 26 25 4 49 49 H 1.08998 * 109.48298 * 62.37996 * 26 25 4 50 50 H 1.09001 * 109.47907 * 178.86125 * 28 27 26 51 51 H 1.08997 * 109.49463 * 58.82596 * 28 27 26 52 52 H 1.08998 * 109.52544 * 297.70703 * 29 28 27 53 53 H 1.09001 * 109.57558 * 177.54494 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9815 0.4372 1.2309 6 8 4.7259 0.9691 2.0269 7 7 3.5531 -0.8224 1.4464 8 6 3.9862 -1.5489 2.6425 9 1 4.0826 -0.8533 3.4761 10 6 5.3378 -2.2149 2.3741 11 6 5.8067 -2.9469 3.6337 12 6 4.7929 -4.0377 3.9929 13 7 3.4621 -3.4263 4.1105 14 6 2.7115 -3.6013 5.2423 15 1 2.0081 -2.8404 5.5468 16 6 2.8545 -4.7567 5.9982 17 7 3.4536 -5.8097 5.4839 18 14 2.1967 -4.8170 7.7456 19 1 0.8296 -5.3968 7.7402 20 1 3.0887 -5.6604 8.5814 21 1 2.1491 -3.4420 8.3043 22 6 2.9518 -2.6238 2.9904 23 1 2.7852 -3.2670 2.1263 24 6 1.6355 -1.9571 3.3949 25 6 3.9920 0.4295 -1.2515 26 6 5.5219 0.3823 -1.2799 27 8 6.0389 1.7143 -1.2512 28 6 5.6837 2.4528 -0.0804 29 6 4.1602 2.5833 -0.0039 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 2.9580 -1.2479 0.8094 36 1 6.0698 -1.4544 2.1022 37 1 5.2347 -2.9285 1.5566 38 1 5.8859 -2.2381 4.4580 39 1 6.7802 -3.4012 3.4498 40 1 5.0698 -4.4956 4.9424 41 1 4.7789 -4.7957 3.2097 42 1 3.5539 -6.6169 6.0122 43 1 1.8052 -1.3107 4.2560 44 1 0.9048 -2.7233 3.6542 45 1 1.2584 -1.3628 2.5626 46 1 3.5966 -0.5859 -1.2288 47 1 3.6269 0.9438 -2.1404 48 1 5.8533 -0.1167 -2.1906 49 1 5.8848 -0.1674 -0.4114 50 1 6.1316 3.4455 -0.1271 51 1 6.0488 1.9305 0.8038 52 1 3.7985 3.1411 -0.8676 53 1 3.8841 3.1084 0.9106 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507372370.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:40 Heat of formation + Delta-G solvation = -133.410321 kcal Electronic energy + Delta-G solvation = -33195.665617 eV Core-core repulsion = 29066.918253 eV Total energy + Delta-G solvation = -4128.747364 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.04769 -40.00853 -38.75100 -38.63570 -35.86820 -35.20143 -34.19223 -33.39728 -32.05237 -30.85518 -29.12766 -27.91564 -26.97164 -26.79592 -24.89753 -24.49339 -23.64698 -22.59534 -22.28984 -21.19532 -20.24726 -18.29289 -17.94785 -17.51424 -17.42399 -17.07429 -16.86827 -16.62627 -16.40388 -16.08609 -15.68699 -15.64721 -15.55667 -15.22710 -15.10135 -14.71350 -14.51725 -14.40276 -14.24924 -13.44400 -13.37725 -13.30587 -13.15555 -13.10720 -12.90072 -12.80274 -12.71972 -12.50263 -12.37604 -12.32972 -12.19243 -12.02524 -11.82289 -11.78890 -11.64965 -11.59216 -11.43816 -11.17127 -10.76941 -10.55993 -10.52748 -10.29460 -9.88468 -8.65128 -7.85607 -5.30891 1.45308 1.48218 1.57065 1.66294 2.19486 2.53936 2.69850 2.95877 3.29972 3.53327 3.56864 3.66981 3.83215 3.88256 3.99213 4.06087 4.08569 4.20894 4.27448 4.35066 4.38295 4.43859 4.52486 4.58320 4.62044 4.63056 4.65692 4.67939 4.71903 4.77187 4.80525 4.87167 4.89393 4.92732 5.00292 5.01401 5.06063 5.08571 5.12431 5.16999 5.24683 5.31463 5.43802 5.52014 5.64863 5.70140 5.76352 6.17821 6.23303 6.41623 6.71275 7.16337 7.37406 7.86812 8.38973 9.21552 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016253 B = 0.003516 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.298135 B = 7962.178479 C = 8861.206292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.406 6.406 3 C 0.078 3.922 4 C -0.074 4.074 5 C 0.520 3.480 6 O -0.581 6.581 7 N -0.695 5.695 8 C 0.148 3.852 9 H 0.053 0.947 10 C -0.107 4.107 11 C -0.129 4.129 12 C 0.177 3.823 13 N -0.600 5.600 14 C -0.254 4.254 15 H 0.071 0.929 16 C -0.047 4.047 17 N -0.933 5.933 18 Si 0.960 3.040 19 H -0.284 1.284 20 H -0.294 1.294 21 H -0.273 1.273 22 C 0.168 3.832 23 H 0.028 0.972 24 C -0.123 4.123 25 C -0.130 4.130 26 C 0.053 3.947 27 O -0.394 6.394 28 C 0.049 3.951 29 C -0.122 4.122 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.041 0.959 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.413 0.587 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.043 0.957 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.004 0.996 42 H 0.249 0.751 43 H 0.037 0.963 44 H 0.047 0.953 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.104 0.896 48 H 0.116 0.884 49 H 0.027 0.973 50 H 0.108 0.892 51 H 0.048 0.952 52 H 0.104 0.896 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.277 15.647 -17.498 23.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.325 6.325 3 C 0.001 3.999 4 C -0.077 4.077 5 C 0.307 3.693 6 O -0.462 6.462 7 N -0.347 5.347 8 C 0.041 3.959 9 H 0.072 0.928 10 C -0.145 4.145 11 C -0.169 4.169 12 C 0.051 3.949 13 N -0.323 5.323 14 C -0.384 4.384 15 H 0.088 0.912 16 C -0.242 4.242 17 N -0.579 5.579 18 Si 0.788 3.212 19 H -0.211 1.211 20 H -0.220 1.220 21 H -0.198 1.198 22 C 0.061 3.939 23 H 0.045 0.955 24 C -0.180 4.180 25 C -0.168 4.168 26 C -0.024 4.024 27 O -0.313 6.313 28 C -0.027 4.027 29 C -0.160 4.160 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.252 0.748 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.022 0.978 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.066 0.934 45 H 0.092 0.908 46 H 0.107 0.893 47 H 0.123 0.877 48 H 0.134 0.866 49 H 0.045 0.955 50 H 0.126 0.874 51 H 0.066 0.934 52 H 0.123 0.877 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.551 15.756 -16.997 23.317 hybrid contribution -0.690 -0.728 1.446 1.760 sum -3.240 15.028 -15.551 21.867 Atomic orbital electron populations 1.22880 0.79074 1.03770 1.00842 1.87688 1.21561 1.27678 1.95560 1.22498 0.89638 0.85481 1.02303 1.21009 0.96237 0.97052 0.93426 1.20862 0.79518 0.81607 0.87305 1.90630 1.38063 1.68750 1.48733 1.46044 1.49531 1.14317 1.24777 1.21240 0.94586 0.93048 0.87065 0.92846 1.21659 0.96352 0.98653 0.97867 1.22018 0.99193 0.98632 0.97055 1.20616 0.83575 0.91692 0.98981 1.44274 1.14947 1.58308 1.14812 1.19425 1.19027 0.99631 1.00307 0.91186 1.25729 1.01280 0.94639 1.02565 1.70168 1.48689 1.02463 1.36553 0.85384 0.77493 0.77425 0.80894 1.21106 1.22041 1.19849 1.20656 0.92334 0.90549 0.90344 0.95476 1.21679 0.96321 0.99486 1.00525 1.22179 0.95960 1.02149 0.96515 1.22712 0.93521 0.83819 1.02310 1.87873 1.75196 1.25919 1.42357 1.22807 0.94751 0.97320 0.87859 1.21958 0.96059 0.93794 1.04219 0.92076 0.88936 0.94078 0.93125 0.89097 0.74822 0.92985 0.91806 0.93830 0.90997 0.92714 0.97834 0.94220 0.94415 0.93352 0.90753 0.89277 0.87725 0.86650 0.95497 0.87437 0.93424 0.87721 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.41 -7.00 7.62 -148.98 -1.13 -8.13 16 3 C 0.08 1.21 4.81 71.98 0.35 1.56 16 4 C -0.07 -1.45 0.53 -52.81 -0.03 -1.48 16 5 C 0.52 14.86 5.11 87.66 0.45 15.31 16 6 O -0.58 -21.05 13.50 -3.01 -0.04 -21.09 16 7 N -0.69 -20.19 4.11 -442.17 -1.82 -22.01 16 8 C 0.15 5.40 1.99 45.07 0.09 5.49 16 9 H 0.05 2.31 7.58 -2.39 -0.02 2.29 16 10 C -0.11 -3.86 5.46 30.62 0.17 -3.69 16 11 C -0.13 -5.22 6.08 30.67 0.19 -5.03 16 12 C 0.18 8.65 5.29 86.36 0.46 9.11 16 13 N -0.60 -29.86 2.99 -675.24 -2.02 -31.88 16 14 C -0.25 -13.75 8.59 84.03 0.72 -13.03 16 15 H 0.07 3.71 6.22 -2.91 -0.02 3.69 16 16 C -0.05 -2.59 4.93 84.86 0.42 -2.17 16 17 N -0.93 -54.76 11.22 21.65 0.24 -54.52 16 18 Si 0.96 44.98 29.58 68.60 2.03 47.01 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 22 C 0.17 6.82 3.03 44.97 0.14 6.95 16 23 H 0.03 1.12 8.14 -2.39 -0.02 1.11 16 24 C -0.12 -4.54 7.83 71.98 0.56 -3.97 16 25 C -0.13 -2.19 4.67 30.69 0.14 -2.04 16 26 C 0.05 1.09 6.62 72.01 0.48 1.56 16 27 O -0.39 -9.21 10.77 -148.98 -1.60 -10.82 16 28 C 0.05 1.10 6.55 72.01 0.47 1.57 16 29 C -0.12 -2.25 4.56 30.69 0.14 -2.11 16 30 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.09 1.15 8.14 -2.38 -0.02 1.14 16 32 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.41 10.64 5.98 -92.71 -0.55 10.09 16 36 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.05 3.02 6.11 -2.39 -0.01 3.01 16 41 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 42 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 43 H 0.04 1.48 7.45 -2.39 -0.02 1.46 16 44 H 0.05 1.90 7.62 -2.38 -0.02 1.89 16 45 H 0.07 2.24 7.80 -2.39 -0.02 2.22 16 46 H 0.09 1.48 7.18 -2.39 -0.02 1.46 16 47 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.12 1.87 8.14 -2.38 -0.02 1.85 16 49 H 0.03 0.68 7.38 -2.39 -0.02 0.67 16 50 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 51 H 0.05 1.39 5.80 -2.39 -0.01 1.38 16 52 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 53 H 0.08 1.51 8.03 -2.39 -0.02 1.49 16 Total: -1.00 -67.91 395.75 1.97 -65.94 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: 0.33 Total: 25.82 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 5.99 Total: 9.67 kcal Atomic # 7 Polarization: -104.82 SS G_CDS: -3.59 Total: -108.41 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -2.78 Total: -40.03 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -67.91 1.97 -65.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507372370.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.470 kcal (2) G-P(sol) polarization free energy of solvation -67.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds