Wall clock time and date at job start Tue Mar 31 2020 23:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.52153 * 2 1 4 4 C 1.53036 * 109.49565 * 239.92556 * 2 1 3 5 5 C 1.53040 * 109.52396 * 301.40159 * 4 2 1 6 6 C 1.53190 * 109.31629 * 298.64315 * 5 4 2 7 7 N 1.46925 * 108.77278 * 54.63641 * 6 5 4 8 8 C 1.34774 * 120.63236 * 126.37154 * 7 6 5 9 9 O 1.21281 * 120.00138 * 174.17263 * 8 7 6 10 10 C 1.50709 * 119.99908 * 354.17410 * 8 7 6 11 11 H 1.08997 * 109.52408 * 49.91926 * 10 8 7 12 12 C 1.53144 * 109.51955 * 289.78809 * 10 8 7 13 13 O 1.43080 * 109.14467 * 184.78240 * 12 10 8 14 14 C 1.43073 * 113.59159 * 57.95999 * 13 12 10 15 15 C 1.53147 * 109.14921 * 302.04114 * 14 13 12 16 16 O 1.43071 * 109.52168 * 170.05216 * 10 8 7 17 17 C 1.46927 * 118.73586 * 306.38992 * 7 6 5 18 18 H 1.08998 * 109.58777 * 293.82139 * 17 7 6 19 19 C 1.53009 * 109.58347 * 173.53951 * 17 7 6 20 20 C 1.52999 * 109.46938 * 181.24141 * 19 17 7 21 21 C 1.52999 * 109.47178 * 185.05464 * 20 19 17 22 22 N 1.46496 * 109.47255 * 179.97438 * 21 20 19 23 23 C 1.36943 * 119.99919 * 179.97438 * 22 21 20 24 24 H 1.08005 * 120.00053 * 0.02562 * 23 22 21 25 25 C 1.38810 * 119.99816 * 179.97438 * 23 22 21 26 26 N 1.31614 * 120.00118 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99749 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47149 * 90.00141 * 27 25 23 29 29 H 1.48505 * 109.47229 * 210.00402 * 27 25 23 30 30 H 1.48503 * 109.47189 * 330.00337 * 27 25 23 31 31 H 1.09003 * 109.47204 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46742 * 300.07571 * 1 2 3 33 33 H 1.08995 * 109.47342 * 60.07362 * 1 2 3 34 34 H 1.08999 * 109.46317 * 181.39229 * 4 2 1 35 35 H 1.09002 * 109.46415 * 61.41851 * 4 2 1 36 36 H 1.08997 * 109.49865 * 58.60198 * 5 4 2 37 37 H 1.09003 * 109.49766 * 178.69316 * 5 4 2 38 38 H 1.09000 * 109.58592 * 174.42144 * 6 5 4 39 39 H 1.09000 * 109.58695 * 294.84764 * 6 5 4 40 40 H 1.08992 * 109.52590 * 304.68893 * 12 10 8 41 41 H 1.09001 * 109.52551 * 64.82395 * 12 10 8 42 42 H 1.09001 * 109.52892 * 61.94432 * 14 13 12 43 43 H 1.09001 * 109.52174 * 182.07412 * 14 13 12 44 44 H 1.08999 * 109.52334 * 175.21692 * 15 14 13 45 45 H 1.08997 * 109.52391 * 295.34912 * 15 14 13 46 46 H 1.08994 * 109.46911 * 301.24387 * 19 17 7 47 47 H 1.08998 * 109.46967 * 61.23829 * 19 17 7 48 48 H 1.08999 * 109.47265 * 305.04741 * 20 19 17 49 49 H 1.08993 * 109.47368 * 65.04967 * 20 19 17 50 50 H 1.09010 * 109.46761 * 300.00148 * 21 20 19 51 51 H 1.09002 * 109.47544 * 59.99338 * 21 20 19 52 52 H 0.96999 * 120.00070 * 359.97438 * 22 21 20 53 53 H 0.96998 * 119.99728 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0407 -0.7229 -1.2484 5 6 1.5030 -2.1556 -1.2657 6 6 2.0140 -2.9037 -0.0304 7 7 1.6516 -2.1376 1.1698 8 6 0.9741 -2.7211 2.1782 9 8 0.7729 -2.1106 3.2067 10 6 0.4666 -4.1321 2.0279 11 1 1.2743 -4.7743 1.6769 12 6 -0.6836 -4.1573 1.0171 13 8 -1.2323 -5.4776 0.9634 14 6 -1.7074 -5.9520 2.2268 15 6 -0.5573 -5.9267 3.2377 16 8 -0.0071 -4.6070 3.2917 17 6 2.0414 -0.7232 1.2495 18 1 3.1275 -0.6457 1.2979 19 6 1.4258 -0.0913 2.4996 20 6 1.8079 1.3889 2.5636 21 6 1.2995 1.9906 3.8753 22 7 1.6658 3.4077 3.9368 23 6 1.3137 4.1592 5.0262 24 1 0.7663 3.7070 5.8401 25 6 1.6613 5.5018 5.0847 26 7 2.3287 6.0526 4.0931 27 14 1.1816 6.5267 6.5710 28 1 2.2612 6.4588 7.5883 29 1 0.9814 7.9382 6.1551 30 1 -0.0791 5.9979 7.1509 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5150 0.8894 33 1 -0.3634 0.5127 -0.8906 34 1 3.1304 -0.7443 -1.2354 35 1 1.6985 -0.1958 -2.1390 36 1 0.4133 -2.1354 -1.2539 37 1 1.8480 -2.6629 -2.1667 38 1 1.5554 -3.8915 0.0143 39 1 3.0980 -3.0040 -0.0864 40 1 -1.4563 -3.4538 1.3269 41 1 -0.3094 -3.8771 0.0324 42 1 -2.5147 -5.3089 2.5773 43 1 -2.0756 -6.9721 2.1178 44 1 -0.9317 -6.2059 4.2226 45 1 0.2150 -6.6310 2.9285 46 1 0.3408 -0.1850 2.4574 47 1 1.8003 -0.6019 3.3868 48 1 2.8924 1.4867 2.5154 49 1 1.3578 1.9170 1.7231 50 1 0.2149 1.8928 3.9235 51 1 1.7496 1.4624 4.7159 52 1 2.1577 3.8136 3.2060 53 1 2.5713 6.9909 4.1339 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565982101.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:08 Heat of formation + Delta-G solvation = -123.829755 kcal Electronic energy + Delta-G solvation = -31885.497603 eV Core-core repulsion = 27757.165684 eV Total energy + Delta-G solvation = -4128.331920 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.21398 -40.69250 -38.79048 -37.34192 -37.06373 -35.56648 -34.42793 -33.23882 -32.51954 -31.04960 -29.51540 -28.13488 -27.34171 -26.28768 -25.40212 -24.72677 -23.39520 -22.59274 -21.99097 -21.22965 -19.44092 -19.17426 -18.32041 -18.05397 -17.82175 -17.05934 -16.83973 -16.74677 -16.47838 -16.40960 -15.77877 -15.76678 -15.36440 -15.33882 -15.08369 -14.99687 -14.77949 -14.50054 -14.19157 -14.07000 -13.69852 -13.41385 -13.19964 -13.15244 -12.91028 -12.79664 -12.75884 -12.67965 -12.42861 -12.24408 -12.11117 -12.00866 -11.94063 -11.84137 -11.71204 -11.60850 -11.53277 -11.31490 -11.15511 -10.96535 -10.36084 -9.98228 -9.57760 -9.05401 -7.99083 -5.28894 1.43635 1.43987 1.46712 1.55469 1.60859 2.52956 2.60329 2.74756 3.31623 3.33456 3.43144 3.70132 3.74261 3.80289 3.88589 3.92782 3.97875 4.07584 4.09197 4.16140 4.20304 4.23974 4.25103 4.40423 4.45539 4.50628 4.57621 4.61648 4.67996 4.69507 4.75970 4.76876 4.81306 4.86609 4.90114 4.97165 5.04702 5.08301 5.16073 5.25508 5.26038 5.32617 5.42869 5.43942 5.47987 5.53313 5.72546 5.82076 5.87779 6.23649 6.36884 7.13221 7.29209 8.03438 8.30434 9.24631 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014358 B = 0.002607 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.627296 B =10736.706697 C =12129.275265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.103 4.103 3 H 0.077 0.923 4 C -0.111 4.111 5 C -0.134 4.134 6 C 0.092 3.908 7 N -0.596 5.596 8 C 0.513 3.487 9 O -0.550 6.550 10 C 0.040 3.960 11 H 0.114 0.886 12 C 0.042 3.958 13 O -0.379 6.379 14 C 0.017 3.983 15 C 0.018 3.982 16 O -0.387 6.387 17 C 0.159 3.841 18 H 0.079 0.921 19 C -0.092 4.092 20 C -0.113 4.113 21 C 0.157 3.843 22 N -0.745 5.745 23 C -0.253 4.253 24 H 0.069 0.931 25 C -0.074 4.074 26 N -0.968 5.968 27 Si 0.978 3.022 28 H -0.284 1.284 29 H -0.289 1.289 30 H -0.272 1.272 31 H 0.059 0.941 32 H 0.034 0.966 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.136 0.864 42 H 0.056 0.944 43 H 0.137 0.863 44 H 0.123 0.877 45 H 0.078 0.922 46 H 0.055 0.945 47 H 0.067 0.933 48 H 0.059 0.941 49 H 0.064 0.936 50 H 0.007 0.993 51 H 0.007 0.993 52 H 0.375 0.625 53 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.356 -30.608 -16.442 34.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 H 0.095 0.905 4 C -0.149 4.149 5 C -0.172 4.172 6 C -0.029 4.029 7 N -0.331 5.331 8 C 0.300 3.700 9 O -0.427 6.427 10 C -0.021 4.021 11 H 0.132 0.868 12 C -0.036 4.036 13 O -0.298 6.298 14 C -0.059 4.059 15 C -0.058 4.058 16 O -0.306 6.306 17 C 0.056 3.944 18 H 0.097 0.903 19 C -0.131 4.131 20 C -0.151 4.151 21 C 0.030 3.970 22 N -0.388 5.388 23 C -0.385 4.385 24 H 0.087 0.913 25 C -0.267 4.267 26 N -0.619 5.619 27 Si 0.806 3.194 28 H -0.211 1.211 29 H -0.215 1.215 30 H -0.197 1.197 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.108 0.892 40 H 0.069 0.931 41 H 0.153 0.847 42 H 0.075 0.925 43 H 0.155 0.845 44 H 0.141 0.859 45 H 0.097 0.903 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.078 0.922 49 H 0.082 0.918 50 H 0.025 0.975 51 H 0.025 0.975 52 H 0.207 0.793 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.556 -30.291 -15.733 34.318 hybrid contribution -0.070 1.211 1.037 1.595 sum -3.627 -29.080 -14.696 32.784 Atomic orbital electron populations 1.21854 0.95300 1.01691 1.01268 1.21537 0.96347 0.99763 0.94609 0.90498 1.21544 1.01080 0.95811 0.96455 1.22009 1.01657 0.95609 0.97931 1.22257 1.02255 0.95313 0.83078 1.48120 1.55283 1.11111 1.18549 1.20426 0.78275 0.87903 0.83412 1.90818 1.57676 1.64280 1.29958 1.22685 0.98636 0.93861 0.86925 0.86819 1.23209 0.94323 0.85414 1.00631 1.88104 1.79774 1.30749 1.31133 1.23497 0.95836 1.02768 0.83788 1.23591 0.96495 0.83187 1.02526 1.88217 1.80406 1.33359 1.28630 1.21277 0.98727 0.79269 0.95120 0.90310 1.21872 1.00629 0.92624 0.97929 1.21715 1.00595 0.96368 0.96465 1.20684 0.95979 0.83964 0.96354 1.42580 1.67883 1.06421 1.21933 1.19641 1.28893 0.92303 0.97669 0.91304 1.25621 1.01591 0.98071 1.01379 1.69816 1.45768 1.12464 1.33838 0.85083 0.78053 0.77681 0.78602 1.21094 1.21473 1.19671 0.92198 0.94698 0.91724 0.90885 0.90586 0.91133 0.87719 0.87882 0.89157 0.93081 0.84665 0.92521 0.84488 0.85929 0.90336 0.92603 0.91443 0.92213 0.91779 0.97473 0.97520 0.79270 0.93748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.20 71.98 0.59 -2.44 16 2 C -0.10 -2.02 2.27 -10.73 -0.02 -2.04 16 3 H 0.08 1.72 6.88 -2.39 -0.02 1.70 16 4 C -0.11 -1.35 5.43 30.62 0.17 -1.18 16 5 C -0.13 -1.07 5.62 30.67 0.17 -0.89 16 6 C 0.09 0.88 5.60 86.36 0.48 1.36 16 7 N -0.60 -11.33 2.41 -795.07 -1.92 -13.24 16 8 C 0.51 12.73 6.88 87.66 0.60 13.33 16 9 O -0.55 -19.57 12.09 15.77 0.19 -19.38 16 10 C 0.04 0.75 2.39 29.90 0.07 0.82 16 11 H 0.11 1.49 7.13 -2.39 -0.02 1.47 16 12 C 0.04 0.63 6.00 72.03 0.43 1.06 16 13 O -0.38 -5.65 10.85 -136.05 -1.48 -7.13 16 14 C 0.02 0.21 7.05 72.03 0.51 0.71 16 15 C 0.02 0.24 7.05 72.03 0.51 0.75 16 16 O -0.39 -9.03 10.05 -122.99 -1.24 -10.26 16 17 C 0.16 3.68 2.72 44.97 0.12 3.80 16 18 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 19 C -0.09 -3.00 2.66 30.60 0.08 -2.92 16 20 C -0.11 -4.17 4.80 30.59 0.15 -4.03 16 21 C 0.16 7.44 6.26 86.38 0.54 7.98 16 22 N -0.75 -42.23 5.60 -343.44 -1.92 -44.15 16 23 C -0.25 -15.50 9.99 84.03 0.84 -14.66 16 24 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 25 C -0.07 -4.53 5.50 84.86 0.47 -4.06 16 26 N -0.97 -61.78 13.06 21.65 0.28 -61.50 16 27 Si 0.98 48.55 29.55 68.60 2.03 50.58 16 28 H -0.28 -13.76 7.11 99.48 0.71 -13.06 16 29 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 30 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 31 H 0.06 1.13 5.97 -2.39 -0.01 1.11 16 32 H 0.03 0.94 6.27 -2.38 -0.01 0.93 16 33 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 0.62 5.94 -2.39 -0.01 0.61 16 37 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.10 0.60 4.58 -2.39 -0.01 0.59 16 39 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.14 1.32 5.73 -2.39 -0.01 1.30 16 42 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.12 1.27 8.14 -2.39 -0.02 1.26 16 45 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.06 1.98 5.55 -2.39 -0.01 1.97 16 47 H 0.07 2.57 6.19 -2.39 -0.01 2.55 16 48 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 49 H 0.06 2.30 6.74 -2.39 -0.02 2.29 16 50 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 51 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 52 H 0.38 21.92 7.67 -92.71 -0.71 21.21 16 53 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -80.67 392.13 1.86 -78.82 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.20 Total: 28.68 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 5.71 Total: -2.40 kcal Atomic # 7 Polarization: -115.34 SS G_CDS: -3.56 Total: -118.90 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -2.52 Total: -36.77 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 2.03 Total: 50.58 kcal Total: -80.67 1.86 -78.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565982101.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.012 kcal (2) G-P(sol) polarization free energy of solvation -80.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds