Wall clock time and date at job start Tue Mar 31 2020 23:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.49265 * 2 1 4 4 C 1.53039 * 109.49371 * 239.93396 * 2 1 3 5 5 C 1.53033 * 109.54054 * 301.41388 * 4 2 1 6 6 C 1.53198 * 109.31071 * 298.63784 * 5 4 2 7 7 N 1.46923 * 108.77495 * 54.63571 * 6 5 4 8 8 C 1.34773 * 120.63007 * 126.37208 * 7 6 5 9 9 O 1.21283 * 120.00312 * 176.51832 * 8 7 6 10 10 C 1.50701 * 120.00180 * 356.51177 * 8 7 6 11 11 H 1.08994 * 109.57888 * 305.16858 * 10 8 7 12 12 C 1.53142 * 109.52194 * 65.33256 * 10 8 7 13 13 O 1.43082 * 109.15036 * 175.21497 * 12 10 8 14 14 C 1.43077 * 113.59281 * 302.04692 * 13 12 10 15 15 C 1.53142 * 109.15082 * 57.95333 * 14 13 12 16 16 O 1.43077 * 109.52603 * 185.00479 * 10 8 7 17 17 C 1.46927 * 118.73762 * 306.64144 * 7 6 5 18 18 H 1.09001 * 109.58398 * 293.57086 * 17 7 6 19 19 C 1.53001 * 109.58530 * 173.14954 * 17 7 6 20 20 C 1.52998 * 109.47036 * 181.68036 * 19 17 7 21 21 C 1.53005 * 109.47114 * 185.11767 * 20 19 17 22 22 N 1.46492 * 109.46950 * 179.97438 * 21 20 19 23 23 C 1.36942 * 119.99683 * 179.97438 * 22 21 20 24 24 H 1.07995 * 120.00054 * 359.97438 * 23 22 21 25 25 C 1.38814 * 119.99956 * 179.97438 * 23 22 21 26 26 N 1.31620 * 119.99941 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00139 * 179.97438 * 25 23 22 28 28 H 1.48493 * 109.46992 * 90.00316 * 27 25 23 29 29 H 1.48502 * 109.47268 * 210.00266 * 27 25 23 30 30 H 1.48501 * 109.47157 * 330.00022 * 27 25 23 31 31 H 1.08994 * 109.47354 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47136 * 300.06798 * 1 2 3 33 33 H 1.09002 * 109.47133 * 60.06245 * 1 2 3 34 34 H 1.09003 * 109.45714 * 181.39403 * 4 2 1 35 35 H 1.09000 * 109.45026 * 61.42815 * 4 2 1 36 36 H 1.09001 * 109.50330 * 178.68721 * 5 4 2 37 37 H 1.08995 * 109.52565 * 58.60143 * 5 4 2 38 38 H 1.09000 * 109.58934 * 294.84423 * 6 5 4 39 39 H 1.09001 * 109.58647 * 174.42051 * 6 5 4 40 40 H 1.08996 * 109.52588 * 55.31243 * 12 10 8 41 41 H 1.08995 * 109.57746 * 295.14528 * 12 10 8 42 42 H 1.09005 * 109.51890 * 298.05269 * 14 13 12 43 43 H 1.08994 * 109.52120 * 177.85826 * 14 13 12 44 44 H 1.08997 * 109.52325 * 184.79121 * 15 14 13 45 45 H 1.08996 * 109.52588 * 64.58984 * 15 14 13 46 46 H 1.09007 * 109.46667 * 301.67232 * 19 17 7 47 47 H 1.08997 * 109.47774 * 61.67325 * 19 17 7 48 48 H 1.09002 * 109.46969 * 305.10963 * 20 19 17 49 49 H 1.09000 * 109.47664 * 65.11375 * 20 19 17 50 50 H 1.09002 * 109.46546 * 299.99455 * 21 20 19 51 51 H 1.09000 * 109.47175 * 59.99309 * 21 20 19 52 52 H 0.97004 * 120.00438 * 359.97438 * 22 21 20 53 53 H 0.97005 * 120.00555 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0407 -0.7228 -1.2486 5 6 1.5030 -2.1554 -1.2666 6 6 2.0140 -2.9040 -0.0315 7 7 1.6515 -2.1384 1.1690 8 6 0.9740 -2.7223 2.1772 9 8 0.7358 -2.0981 3.1893 10 6 0.5123 -4.1510 2.0468 11 1 -0.0846 -4.2608 1.1415 12 6 1.7295 -5.0774 1.9728 13 8 1.2844 -6.4372 1.9619 14 6 0.4944 -6.7903 3.1013 15 6 -0.7228 -5.8639 3.1753 16 8 -0.2777 -4.5041 3.1862 17 6 2.0364 -0.7226 1.2469 18 1 3.1222 -0.6414 1.2973 19 6 1.4135 -0.0896 2.4928 20 6 1.7814 1.3944 2.5490 21 6 1.2672 1.9981 3.8575 22 7 1.6200 3.4189 3.9116 23 6 1.2607 4.1727 4.9969 24 1 0.7170 3.7199 5.8128 25 6 1.5955 5.5189 5.0485 26 7 2.2578 6.0709 4.0540 27 14 1.1048 6.5474 6.5286 28 1 2.1840 6.4953 7.5472 29 1 0.8916 7.9547 6.1048 30 1 -0.1514 6.0100 7.1103 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5149 0.8894 33 1 -0.3633 0.5129 -0.8906 34 1 3.1305 -0.7441 -1.2355 35 1 1.6985 -0.1952 -2.1388 36 1 1.8480 -2.6623 -2.1678 37 1 0.4132 -2.1356 -1.2549 38 1 3.0979 -3.0043 -0.0875 39 1 1.5553 -3.8918 0.0128 40 1 2.3680 -4.9100 2.8402 41 1 2.2910 -4.8706 1.0618 42 1 1.0914 -6.6804 4.0067 43 1 0.1606 -7.8236 3.0070 44 1 -1.2833 -6.0709 4.0869 45 1 -1.3613 -6.0312 2.3079 46 1 0.3293 -0.1937 2.4498 47 1 1.7916 -0.5917 3.3833 48 1 2.8650 1.5022 2.5004 49 1 1.3264 1.9139 1.7057 50 1 0.1836 1.8904 3.9062 51 1 1.7222 1.4787 4.7009 52 1 2.1082 3.8257 3.1787 53 1 2.4915 7.0117 4.0897 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565982102.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:12 Heat of formation + Delta-G solvation = -120.081266 kcal Electronic energy + Delta-G solvation = -31757.530500 eV Core-core repulsion = 27629.361127 eV Total energy + Delta-G solvation = -4128.169373 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.22509 -40.70831 -38.79109 -37.34553 -37.06035 -35.61990 -34.45570 -33.22631 -32.48921 -31.04303 -29.50923 -28.13584 -27.36856 -26.36336 -25.33963 -24.73035 -23.31712 -22.70758 -21.95560 -21.22964 -19.54698 -19.17738 -18.29304 -17.94544 -17.66983 -17.20698 -17.00736 -16.74921 -16.48655 -16.35987 -15.86486 -15.63692 -15.34718 -15.31592 -15.05657 -15.03611 -14.71892 -14.53713 -14.25160 -13.90090 -13.76976 -13.39734 -13.31524 -13.15422 -12.92509 -12.80451 -12.77623 -12.62382 -12.45506 -12.22172 -12.08772 -12.00106 -11.93466 -11.85190 -11.71238 -11.59407 -11.49421 -11.27745 -11.15600 -10.96402 -10.37143 -9.98027 -9.57406 -9.05295 -7.98993 -5.28797 1.43615 1.44669 1.46672 1.55449 1.61952 2.52959 2.60817 2.74767 3.30455 3.33446 3.44456 3.69540 3.76717 3.79127 3.87749 3.93413 3.97732 4.07257 4.09955 4.16047 4.21697 4.23066 4.23784 4.39189 4.46276 4.54877 4.58445 4.61761 4.67962 4.69203 4.76181 4.77033 4.79947 4.84903 4.89230 4.96800 5.04569 5.08167 5.15139 5.24639 5.25656 5.32411 5.42879 5.44372 5.48021 5.53002 5.72296 5.83107 5.87723 6.23664 6.36836 7.13557 7.29224 8.03496 8.30526 9.24654 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014250 B = 0.002570 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.402942 B =10892.772750 C =12383.128256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 H 0.078 0.922 4 C -0.112 4.112 5 C -0.133 4.133 6 C 0.087 3.913 7 N -0.596 5.596 8 C 0.512 3.488 9 O -0.550 6.550 10 C 0.041 3.959 11 H 0.111 0.889 12 C 0.034 3.966 13 O -0.380 6.380 14 C 0.018 3.982 15 C 0.018 3.982 16 O -0.387 6.387 17 C 0.159 3.841 18 H 0.082 0.918 19 C -0.090 4.090 20 C -0.114 4.114 21 C 0.157 3.843 22 N -0.745 5.745 23 C -0.253 4.253 24 H 0.069 0.931 25 C -0.075 4.075 26 N -0.968 5.968 27 Si 0.978 3.022 28 H -0.284 1.284 29 H -0.289 1.289 30 H -0.272 1.272 31 H 0.056 0.944 32 H 0.034 0.966 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.055 0.945 41 H 0.144 0.856 42 H 0.058 0.942 43 H 0.136 0.864 44 H 0.122 0.878 45 H 0.076 0.924 46 H 0.055 0.945 47 H 0.065 0.935 48 H 0.060 0.940 49 H 0.063 0.937 50 H 0.006 0.994 51 H 0.007 0.993 52 H 0.375 0.625 53 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.269 -31.288 -15.643 35.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 H 0.096 0.904 4 C -0.149 4.149 5 C -0.171 4.171 6 C -0.034 4.034 7 N -0.330 5.330 8 C 0.299 3.701 9 O -0.428 6.428 10 C -0.021 4.021 11 H 0.129 0.871 12 C -0.043 4.043 13 O -0.298 6.298 14 C -0.058 4.058 15 C -0.059 4.059 16 O -0.306 6.306 17 C 0.056 3.944 18 H 0.100 0.900 19 C -0.129 4.129 20 C -0.152 4.152 21 C 0.030 3.970 22 N -0.388 5.388 23 C -0.385 4.385 24 H 0.087 0.913 25 C -0.267 4.267 26 N -0.619 5.619 27 Si 0.806 3.194 28 H -0.211 1.211 29 H -0.215 1.215 30 H -0.197 1.197 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.122 0.878 37 H 0.084 0.916 38 H 0.115 0.885 39 H 0.124 0.876 40 H 0.073 0.927 41 H 0.161 0.839 42 H 0.077 0.923 43 H 0.154 0.846 44 H 0.140 0.860 45 H 0.094 0.906 46 H 0.074 0.926 47 H 0.084 0.916 48 H 0.079 0.921 49 H 0.082 0.918 50 H 0.024 0.976 51 H 0.025 0.975 52 H 0.207 0.793 53 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.486 -30.965 -14.940 34.413 hybrid contribution -0.267 1.252 0.984 1.614 sum -1.753 -29.714 -13.956 32.875 Atomic orbital electron populations 1.21850 0.95522 1.01516 1.01168 1.21482 0.96208 0.99861 0.94802 0.90399 1.21550 1.01181 0.95796 0.96385 1.21974 1.01477 0.95619 0.98047 1.22416 1.02406 0.95461 0.83076 1.48105 1.55447 1.10999 1.18443 1.20429 0.78141 0.88251 0.83242 1.90829 1.56280 1.64448 1.31196 1.22655 0.95429 0.92323 0.91660 0.87142 1.23471 0.93907 0.81532 1.05406 1.88108 1.70529 1.26548 1.44656 1.23485 0.92092 1.01131 0.89092 1.23593 0.96816 0.80275 1.05174 1.88219 1.69928 1.29580 1.42883 1.21196 0.98866 0.79247 0.95058 0.89973 1.21857 1.00667 0.92511 0.97827 1.21731 1.00642 0.96363 0.96462 1.20682 0.95991 0.83908 0.96396 1.42579 1.68208 1.05976 1.22039 1.19637 1.29027 0.92047 0.97782 0.91321 1.25623 1.01659 0.98040 1.01356 1.69818 1.46117 1.12223 1.33707 0.85082 0.78048 0.77690 0.78591 1.21060 1.21481 1.19713 0.92468 0.94712 0.91880 0.90626 0.90760 0.87761 0.91607 0.88524 0.87573 0.92679 0.83885 0.92323 0.84586 0.85972 0.90580 0.92637 0.91604 0.92092 0.91845 0.97572 0.97465 0.79264 0.93752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.16 71.98 0.59 -2.59 16 2 C -0.10 -2.08 2.25 -10.86 -0.02 -2.10 16 3 H 0.08 1.76 6.85 -2.39 -0.02 1.74 16 4 C -0.11 -1.39 5.43 30.62 0.17 -1.22 16 5 C -0.13 -1.13 5.74 30.67 0.18 -0.96 16 6 C 0.09 0.81 5.16 86.37 0.45 1.25 16 7 N -0.60 -11.24 2.42 -795.83 -1.92 -13.16 16 8 C 0.51 12.70 7.00 87.66 0.61 13.31 16 9 O -0.55 -19.59 12.02 15.91 0.19 -19.40 16 10 C 0.04 0.75 2.42 29.90 0.07 0.83 16 11 H 0.11 1.54 7.59 -2.39 -0.02 1.53 16 12 C 0.03 0.48 5.87 72.03 0.42 0.90 16 13 O -0.38 -5.43 10.85 -136.01 -1.48 -6.91 16 14 C 0.02 0.21 7.05 72.03 0.51 0.72 16 15 C 0.02 0.24 7.05 72.03 0.51 0.75 16 16 O -0.39 -9.10 10.03 -122.90 -1.23 -10.33 16 17 C 0.16 3.67 2.72 44.83 0.12 3.79 16 18 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 19 C -0.09 -2.95 2.63 30.59 0.08 -2.87 16 20 C -0.11 -4.20 4.74 30.60 0.15 -4.05 16 21 C 0.16 7.46 6.26 86.38 0.54 8.00 16 22 N -0.75 -42.24 5.60 -343.45 -1.92 -44.16 16 23 C -0.25 -15.50 9.99 84.03 0.84 -14.66 16 24 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 25 C -0.07 -4.54 5.50 84.86 0.47 -4.08 16 26 N -0.97 -61.77 13.06 21.65 0.28 -61.48 16 27 Si 0.98 48.59 29.55 68.60 2.03 50.62 16 28 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 29 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 30 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 31 H 0.06 1.18 5.97 -2.39 -0.01 1.17 16 32 H 0.03 0.98 6.10 -2.39 -0.01 0.96 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.07 0.69 6.34 -2.39 -0.02 0.67 16 38 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.11 0.60 4.38 -2.39 -0.01 0.59 16 40 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.14 1.13 5.25 -2.39 -0.01 1.12 16 42 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 43 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.06 2.01 5.46 -2.38 -0.01 2.00 16 47 H 0.07 2.48 6.28 -2.39 -0.01 2.47 16 48 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 49 H 0.06 2.29 6.59 -2.39 -0.02 2.28 16 50 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 51 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 52 H 0.38 21.93 7.67 -92.71 -0.71 21.22 16 53 H 0.25 15.49 8.31 -92.70 -0.77 14.72 16 Total: -1.00 -80.97 391.43 1.81 -79.15 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.20 Total: 28.67 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 5.67 Total: -2.99 kcal Atomic # 7 Polarization: -115.24 SS G_CDS: -3.57 Total: -118.81 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -2.52 Total: -36.64 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.03 Total: 50.62 kcal Total: -80.97 1.81 -79.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565982102.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.928 kcal (2) G-P(sol) polarization free energy of solvation -80.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds