Wall clock time and date at job start Wed Apr 1 2020 01:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47712 * 2 1 4 4 N 1.46501 * 109.47175 * 119.99896 * 2 1 3 5 5 C 1.36942 * 119.99883 * 274.99633 * 4 2 1 6 6 H 1.08002 * 119.99887 * 0.02562 * 5 4 2 7 7 C 1.38816 * 120.00103 * 179.97438 * 5 4 2 8 8 N 1.31620 * 119.99919 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 119.99965 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47161 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47155 * 120.00219 * 9 7 5 12 12 H 1.48501 * 109.47432 * 239.99975 * 9 7 5 13 13 C 1.52997 * 109.47097 * 239.99451 * 2 1 3 14 14 C 1.53038 * 109.45884 * 65.00308 * 13 2 1 15 15 C 1.53200 * 109.31353 * 178.61716 * 14 13 2 16 16 N 1.46923 * 108.77454 * 54.63255 * 15 14 13 17 17 C 1.34774 * 120.62774 * 126.37131 * 16 15 14 18 18 O 1.21279 * 120.00472 * 359.97438 * 17 16 15 19 19 C 1.50706 * 120.00020 * 179.97438 * 17 16 15 20 20 O 1.42895 * 109.47147 * 180.02562 * 19 17 16 21 21 C 1.42901 * 113.99948 * 179.97438 * 20 19 17 22 22 C 1.53001 * 109.47084 * 179.97438 * 21 20 19 23 23 H 1.08994 * 110.33655 * 307.24974 * 22 21 20 24 24 C 1.54486 * 110.37098 * 184.99787 * 22 21 20 25 25 C 1.54507 * 104.06304 * 217.19105 * 24 22 21 26 26 C 1.54481 * 104.06140 * 0.02562 * 25 24 22 27 27 O 1.44422 * 104.80684 * 23.98105 * 26 25 24 28 28 C 1.46923 * 118.74019 * 306.64173 * 16 15 14 29 29 C 1.52767 * 109.00740 * 53.31208 * 28 16 15 30 30 H 1.09006 * 109.46702 * 300.00190 * 1 2 3 31 31 H 1.08999 * 109.47378 * 59.99979 * 1 2 3 32 32 H 1.08996 * 109.47249 * 180.02562 * 1 2 3 33 33 H 0.97007 * 120.00295 * 94.99781 * 4 2 1 34 34 H 0.96994 * 119.99882 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.46451 * 184.97252 * 13 2 1 36 36 H 1.09000 * 109.50221 * 58.66042 * 14 13 2 37 37 H 1.09001 * 109.52295 * 298.57750 * 14 13 2 38 38 H 1.08995 * 109.57907 * 294.84221 * 15 14 13 39 39 H 1.08998 * 109.70015 * 174.49128 * 15 14 13 40 40 H 1.09001 * 109.46953 * 299.99667 * 19 17 16 41 41 H 1.09000 * 109.47318 * 59.99264 * 19 17 16 42 42 H 1.08995 * 109.47354 * 300.00131 * 21 20 19 43 43 H 1.09003 * 109.47182 * 59.99587 * 21 20 19 44 44 H 1.08998 * 110.51061 * 335.84189 * 24 22 21 45 45 H 1.09008 * 110.50869 * 98.54624 * 24 22 21 46 46 H 1.09001 * 110.51026 * 118.64393 * 25 24 22 47 47 H 1.08997 * 110.51295 * 241.22042 * 25 24 22 48 48 H 1.09003 * 110.37021 * 142.81083 * 26 25 24 49 49 H 1.08999 * 110.37019 * 265.03336 * 26 25 24 50 50 H 1.08997 * 109.58651 * 173.14483 * 28 16 15 51 51 H 1.08992 * 109.58942 * 293.57315 * 28 16 15 52 52 H 1.08998 * 109.56180 * 185.54829 * 29 28 16 53 53 H 1.09003 * 109.35696 * 65.49583 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1492 -0.0074 2.3758 6 1 1.8919 1.0404 2.4243 7 6 2.6114 -0.6618 3.5094 8 7 2.9244 -1.9389 3.4503 9 14 2.7892 0.2700 5.1185 10 1 2.3743 1.6822 4.9212 11 1 1.9280 -0.3586 6.1523 12 1 4.2059 0.2270 5.5615 13 6 2.0399 -0.7214 -1.2492 14 6 1.6350 0.0692 -2.4954 15 6 2.1768 -0.6376 -3.7420 16 7 1.7128 -2.0316 -3.7344 17 6 1.0630 -2.5447 -4.7978 18 8 0.8557 -1.8542 -5.7730 19 6 0.5937 -3.9767 -4.7751 20 8 -0.0620 -4.2827 -6.0073 21 6 -0.5475 -5.6241 -6.0899 22 6 -1.2277 -5.8379 -7.4436 23 1 -1.9802 -5.0682 -7.6151 24 6 -1.8700 -7.2415 -7.5070 25 6 -1.6367 -7.6956 -8.9652 26 6 -0.8805 -6.5130 -9.6102 27 8 -0.2475 -5.8327 -8.5046 28 6 1.9655 -2.8538 -2.5433 29 6 1.4309 -2.1239 -1.3124 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 2.2490 -1.6318 1.1527 34 1 3.2477 -2.3961 4.2423 35 1 3.1263 -0.7991 -1.2056 36 1 2.0497 1.0756 -2.4386 37 1 0.5480 0.1263 -2.5533 38 1 3.2665 -0.6150 -3.7301 39 1 1.8107 -0.1354 -4.6374 40 1 1.4507 -4.6378 -4.6461 41 1 -0.1019 -4.1181 -3.9479 42 1 0.2859 -6.3191 -5.9878 43 1 -1.2671 -5.8000 -5.2902 44 1 -1.3752 -7.9197 -6.8118 45 1 -2.9369 -7.1834 -7.2910 46 1 -1.0264 -8.5984 -8.9911 47 1 -2.5881 -7.8643 -9.4696 48 1 -0.1297 -6.8793 -10.3103 49 1 -1.5789 -5.8476 -10.1177 50 1 1.4578 -3.8128 -2.6469 51 1 3.0375 -3.0157 -2.4317 52 1 1.7003 -2.6785 -0.4135 53 1 0.3458 -2.0465 -1.3811 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567634388.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:34:40 Heat of formation + Delta-G solvation = -141.686588 kcal Electronic energy + Delta-G solvation = -30098.987588 eV Core-core repulsion = 25969.881338 eV Total energy + Delta-G solvation = -4129.106250 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.38217 -40.45282 -39.43080 -38.24832 -36.82654 -34.67852 -33.14175 -32.78314 -31.98330 -31.70748 -30.03001 -28.79849 -26.62862 -26.09378 -25.33074 -24.25017 -22.92962 -22.79267 -21.94968 -20.84411 -19.68922 -19.22639 -18.46740 -17.85855 -17.44528 -17.11164 -16.81898 -16.65917 -16.50726 -16.29797 -15.93900 -15.52055 -15.42180 -15.22222 -15.06785 -14.61418 -14.44598 -14.26767 -14.21631 -13.74707 -13.69219 -13.15500 -13.08415 -12.96067 -12.87816 -12.78250 -12.71003 -12.63957 -12.62241 -12.20652 -12.15206 -12.09773 -11.99044 -11.73657 -11.58006 -11.48469 -11.26380 -11.11571 -10.89120 -10.77075 -10.73675 -10.71828 -9.68510 -8.94129 -7.90871 -5.16614 1.48102 1.49109 1.52515 1.58090 1.69937 2.58592 2.73715 2.94925 3.42886 3.47504 3.67764 3.78385 3.81609 3.89664 3.95439 3.99725 4.11032 4.14214 4.15944 4.23752 4.27571 4.28479 4.36790 4.41089 4.43359 4.50677 4.56895 4.57241 4.67064 4.75167 4.80364 4.81667 4.88717 4.89023 4.95940 4.96052 5.02126 5.08401 5.10410 5.14874 5.17168 5.27620 5.35991 5.43953 5.54884 5.60908 5.73198 5.88857 6.06457 6.33242 6.37348 7.11424 7.39859 8.18253 8.41792 9.32684 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.022825 B = 0.001823 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.427943 B =15352.913662 C =16061.667243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.171 3.829 3 H 0.037 0.963 4 N -0.733 5.733 5 C -0.233 4.233 6 H 0.070 0.930 7 C -0.075 4.075 8 N -0.967 5.967 9 Si 0.964 3.036 10 H -0.270 1.270 11 H -0.296 1.296 12 H -0.295 1.295 13 C -0.081 4.081 14 C -0.116 4.116 15 C 0.114 3.886 16 N -0.603 5.603 17 C 0.511 3.489 18 O -0.576 6.576 19 C 0.046 3.954 20 O -0.394 6.394 21 C 0.061 3.939 22 C 0.068 3.932 23 H 0.066 0.934 24 C -0.142 4.142 25 C -0.150 4.150 26 C 0.031 3.969 27 O -0.399 6.399 28 C 0.109 3.891 29 C -0.124 4.124 30 H 0.028 0.972 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.376 0.624 34 H 0.249 0.751 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.068 0.932 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.097 0.903 46 H 0.083 0.917 47 H 0.094 0.906 48 H 0.098 0.902 49 H 0.061 0.939 50 H 0.110 0.890 51 H 0.082 0.918 52 H 0.068 0.932 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.803 -12.350 -22.938 27.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.063 3.937 3 H 0.055 0.945 4 N -0.374 5.374 5 C -0.365 4.365 6 H 0.088 0.912 7 C -0.267 4.267 8 N -0.618 5.618 9 Si 0.795 3.205 10 H -0.195 1.195 11 H -0.223 1.223 12 H -0.223 1.223 13 C -0.101 4.101 14 C -0.155 4.155 15 C -0.008 4.008 16 N -0.337 5.337 17 C 0.299 3.701 18 O -0.456 6.456 19 C -0.033 4.033 20 O -0.313 6.313 21 C -0.015 4.015 22 C 0.010 3.990 23 H 0.084 0.916 24 C -0.180 4.180 25 C -0.188 4.188 26 C -0.045 4.045 27 O -0.319 6.319 28 C -0.013 4.013 29 C -0.162 4.162 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.209 0.791 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.086 0.914 43 H 0.110 0.890 44 H 0.107 0.893 45 H 0.116 0.884 46 H 0.102 0.898 47 H 0.113 0.887 48 H 0.116 0.884 49 H 0.079 0.921 50 H 0.128 0.872 51 H 0.100 0.900 52 H 0.087 0.913 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.718 -11.607 -23.481 27.606 hybrid contribution 0.205 0.140 1.422 1.443 sum -8.513 -11.468 -22.059 26.279 Atomic orbital electron populations 1.22375 0.98219 1.00996 0.99985 1.20421 0.92536 0.94776 0.85936 0.94527 1.42628 1.78306 1.10481 1.06014 1.19626 1.34291 0.94026 0.88579 0.91206 1.25416 1.03395 0.96883 1.01002 1.69786 1.52953 1.09931 1.29142 0.85194 0.76686 0.78173 0.80465 1.19462 1.22328 1.22256 1.21253 0.99843 0.95326 0.93642 1.21893 1.01547 0.99330 0.92727 1.21607 0.99420 0.80918 0.98841 1.48152 1.56387 1.13276 1.15876 1.20805 0.77252 0.89904 0.82103 1.90683 1.57538 1.62637 1.34701 1.22379 0.99559 0.92705 0.88677 1.88011 1.76290 1.30760 1.36272 1.22867 0.99100 0.82833 0.96654 1.23168 0.90434 0.98293 0.87100 0.91553 1.22931 1.02585 0.94295 0.98160 1.22942 1.02000 0.98695 0.95117 1.23621 0.97531 0.93381 0.89985 1.89222 1.38858 1.79174 1.24629 1.21888 1.02345 0.94263 0.82829 1.21841 1.00986 0.95840 0.97546 0.95300 0.91764 0.93138 0.79093 0.94188 0.91809 0.89813 0.91475 0.90398 0.90221 0.87735 0.87426 0.91364 0.88951 0.89253 0.88406 0.89797 0.88723 0.88361 0.92081 0.87221 0.90013 0.91317 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.27 8.76 71.98 0.63 -4.64 16 2 C 0.17 6.30 2.67 44.99 0.12 6.42 16 3 H 0.04 1.41 8.08 -2.39 -0.02 1.40 16 4 N -0.73 -34.79 5.06 -322.94 -1.63 -36.43 16 5 C -0.23 -12.58 9.93 84.03 0.83 -11.75 16 6 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 7 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 8 N -0.97 -57.28 13.06 21.65 0.28 -57.00 16 9 Si 0.96 45.58 29.55 68.60 2.03 47.60 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 12 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 13 C -0.08 -2.34 2.08 -10.77 -0.02 -2.36 16 14 C -0.12 -2.83 5.08 30.67 0.16 -2.68 16 15 C 0.11 2.74 6.44 86.37 0.56 3.29 16 16 N -0.60 -14.12 2.98 -819.75 -2.44 -16.56 16 17 C 0.51 13.81 7.78 87.66 0.68 14.49 16 18 O -0.58 -21.14 15.91 16.01 0.25 -20.88 16 19 C 0.05 0.89 4.77 71.24 0.34 1.23 16 20 O -0.39 -9.84 9.88 -128.36 -1.27 -11.11 16 21 C 0.06 1.00 5.54 71.98 0.40 1.40 16 22 C 0.07 1.15 3.57 31.10 0.11 1.26 16 23 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 24 C -0.14 -1.33 6.63 31.61 0.21 -1.12 16 25 C -0.15 -1.30 7.09 31.61 0.22 -1.08 16 26 C 0.03 0.44 7.63 72.49 0.55 0.99 16 27 O -0.40 -8.96 11.34 -148.94 -1.69 -10.65 16 28 C 0.11 2.13 6.31 86.22 0.54 2.67 16 29 C -0.12 -3.16 4.70 30.53 0.14 -3.02 16 30 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.06 1.81 6.60 -2.39 -0.02 1.79 16 32 H 0.05 1.68 6.38 -2.39 -0.02 1.66 16 33 H 0.38 18.76 6.35 -92.70 -0.59 18.17 16 34 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 35 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 36 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.07 1.68 6.64 -2.39 -0.02 1.66 16 38 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.08 2.12 7.00 -2.39 -0.02 2.10 16 40 H 0.10 1.49 7.95 -2.39 -0.02 1.47 16 41 H 0.11 1.48 7.68 -2.39 -0.02 1.47 16 42 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.09 0.66 7.87 -2.39 -0.02 0.64 16 45 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 46 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 48 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.11 1.50 5.93 -2.39 -0.01 1.48 16 51 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 52 H 0.07 2.04 6.74 -2.39 -0.02 2.03 16 53 H 0.07 1.78 6.43 -2.39 -0.02 1.76 16 Total: -1.00 -75.71 409.21 1.78 -73.93 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: 0.30 Total: 29.70 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 5.95 Total: 1.39 kcal Atomic # 7 Polarization: -106.19 SS G_CDS: -3.79 Total: -109.98 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -2.70 Total: -42.64 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -75.71 1.78 -73.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567634388.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.760 kcal (2) G-P(sol) polarization free energy of solvation -75.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds