Wall clock time and date at job start Tue Mar 31 2020 23:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.87559 * 2 1 4 4 C 1.54103 * 109.87826 * 121.16816 * 2 1 3 5 5 C 1.54810 * 104.19016 * 121.45006 * 4 2 1 6 6 C 1.54995 * 102.09233 * 20.87871 * 5 4 2 7 7 H 1.09001 * 110.75064 * 81.54168 * 6 5 4 8 8 C 1.53001 * 110.61885 * 204.47369 * 6 5 4 9 9 C 1.52988 * 109.47019 * 180.52455 * 8 6 5 10 10 C 1.50705 * 109.47192 * 180.02562 * 9 8 6 11 11 O 1.21287 * 119.99782 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00418 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00383 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47232 * 175.90169 * 13 12 10 15 15 N 1.46496 * 109.54183 * 305.05823 * 14 13 12 16 16 C 1.36931 * 120.00249 * 300.58353 * 15 14 13 17 17 H 1.08003 * 120.00181 * 354.07592 * 16 15 14 18 18 C 1.38814 * 120.00139 * 174.06642 * 16 15 14 19 19 N 1.31618 * 119.99978 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00141 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47397 * 59.99909 * 20 18 16 22 22 H 1.48502 * 109.47006 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47041 * 300.00071 * 20 18 16 24 24 C 1.53182 * 109.54172 * 184.79392 * 14 13 12 25 25 C 1.53092 * 109.16149 * 183.15807 * 24 14 13 26 26 O 1.42903 * 109.41677 * 57.60534 * 25 24 14 27 27 C 1.42896 * 114.09741 * 298.83999 * 26 25 24 28 28 C 1.53095 * 109.41661 * 61.16192 * 27 26 25 29 29 O 1.43743 * 109.87808 * 238.99288 * 2 1 3 30 30 H 1.09003 * 109.47451 * 179.55273 * 1 2 3 31 31 H 1.09004 * 109.46975 * 299.55019 * 1 2 3 32 32 H 1.08997 * 109.47108 * 59.55161 * 1 2 3 33 33 H 1.08995 * 110.48464 * 240.12916 * 4 2 1 34 34 H 1.09005 * 110.48726 * 2.63867 * 4 2 1 35 35 H 1.09003 * 110.90425 * 262.67853 * 5 4 2 36 36 H 1.09002 * 110.90372 * 139.07670 * 5 4 2 37 37 H 1.09002 * 109.46683 * 60.52511 * 8 6 5 38 38 H 1.08999 * 109.46745 * 300.52647 * 8 6 5 39 39 H 1.09002 * 109.47348 * 60.00463 * 9 8 6 40 40 H 1.08999 * 109.47519 * 299.99717 * 9 8 6 41 41 H 0.97004 * 119.99749 * 359.97438 * 12 10 9 42 42 H 1.08997 * 109.47134 * 295.90975 * 13 12 10 43 43 H 1.09003 * 109.46738 * 55.90127 * 13 12 10 44 44 H 0.97000 * 119.99833 * 120.59277 * 15 14 13 45 45 H 0.96996 * 120.00331 * 179.97438 * 19 18 16 46 46 H 1.09008 * 109.51736 * 303.05770 * 24 14 13 47 47 H 1.08992 * 109.52464 * 63.24229 * 24 14 13 48 48 H 1.09003 * 109.47848 * 297.61835 * 25 24 14 49 49 H 1.08999 * 109.47663 * 177.59175 * 25 24 14 50 50 H 1.09000 * 109.48645 * 301.18033 * 27 26 25 51 51 H 1.08997 * 109.48245 * 181.14459 * 27 26 25 52 52 H 1.08997 * 109.52574 * 182.48338 * 28 27 26 53 53 H 1.09000 * 109.52174 * 62.29284 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0540 -0.7500 1.2400 5 6 2.9195 -1.8925 0.6549 6 6 3.2379 -1.3632 -0.7667 7 1 4.0690 -0.6586 -0.7392 8 6 3.5474 -2.5222 -1.7163 9 6 3.8701 -1.9704 -3.1062 10 6 4.1744 -3.1120 -4.0418 11 8 4.1372 -4.2546 -3.6365 12 7 4.4888 -2.8634 -5.3286 13 6 4.7851 -3.9731 -6.2379 14 6 5.0081 -3.4293 -7.6505 15 7 3.8474 -2.6338 -8.0582 16 6 2.6061 -3.2095 -8.1080 17 1 2.4958 -4.2707 -7.9402 18 6 1.4892 -2.4292 -8.3739 19 7 1.6235 -1.1361 -8.5788 20 14 -0.2044 -3.2145 -8.4411 21 1 -0.5104 -3.8443 -7.1316 22 1 -1.2209 -2.1741 -8.7402 23 1 -0.2281 -4.2496 -9.5057 24 6 5.1995 -4.5961 -8.6244 25 6 5.5001 -4.0420 -10.0195 26 8 6.6606 -3.2102 -9.9604 27 6 6.5227 -2.0765 -9.1015 28 6 6.2633 -2.5515 -7.6694 29 8 2.0188 -0.6964 -1.1586 30 1 -0.3634 -1.0276 -0.0080 31 1 -0.3633 0.5069 0.8940 32 1 -0.3633 0.5208 -0.8859 33 1 2.6619 -0.0886 1.8572 34 1 1.2245 -1.1555 1.8194 35 1 2.3538 -2.8230 0.6060 36 1 3.8331 -2.0243 1.2346 37 1 2.6816 -3.1815 -1.7791 38 1 4.4036 -3.0817 -1.3396 39 1 4.7359 -1.3111 -3.0434 40 1 3.0138 -1.4109 -3.4829 41 1 4.5188 -1.9495 -5.6526 42 1 5.6843 -4.4888 -5.9008 43 1 3.9474 -4.6705 -6.2450 44 1 3.9584 -1.6992 -8.2930 45 1 0.8432 -0.5908 -8.7650 46 1 6.0323 -5.2156 -8.2913 47 1 4.2896 -5.1952 -8.6585 48 1 4.6500 -3.4559 -10.3687 49 1 5.6795 -4.8681 -10.7077 50 1 5.6860 -1.4646 -9.4386 51 1 7.4387 -1.4865 -9.1284 52 1 6.1140 -1.6884 -7.0207 53 1 7.1175 -3.1298 -7.3171 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569735989.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:25 Heat of formation + Delta-G solvation = -157.750767 kcal Electronic energy + Delta-G solvation = -31182.325186 eV Core-core repulsion = 27052.522341 eV Total energy + Delta-G solvation = -4129.802845 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.14451 -40.60705 -40.01947 -37.31685 -35.09716 -34.86865 -33.83211 -33.19223 -31.98456 -31.58457 -30.94761 -28.67696 -26.96311 -25.92939 -24.53219 -24.16269 -23.18138 -22.00856 -21.85502 -21.10229 -20.11010 -19.11450 -18.10054 -17.60617 -17.20206 -17.01247 -16.89734 -16.72632 -16.29983 -16.20416 -15.86593 -15.76439 -15.41664 -15.29399 -14.64935 -14.43698 -14.33963 -14.21678 -13.95233 -13.68479 -13.55504 -13.40690 -13.17243 -13.12887 -12.89887 -12.84150 -12.70445 -12.62586 -12.55257 -12.27761 -12.11680 -12.07070 -11.79565 -11.72434 -11.64426 -11.50603 -11.49438 -11.13118 -10.98085 -10.75538 -10.56836 -10.32824 -9.87515 -8.97847 -7.92350 -5.17907 1.42723 1.45590 1.48951 1.74666 2.40638 2.55493 2.88601 3.07277 3.41052 3.61959 3.72905 3.75307 3.87350 3.89610 3.98421 4.02189 4.03730 4.14700 4.15756 4.23846 4.36101 4.41118 4.46524 4.47437 4.57159 4.61594 4.68003 4.72363 4.76127 4.79138 4.83176 4.86351 4.88795 4.93669 4.96344 5.03666 5.09848 5.11387 5.17230 5.19340 5.22360 5.27817 5.28658 5.30422 5.34097 5.57996 5.66270 6.11436 6.29766 6.36345 6.70286 7.36588 7.39510 8.08494 8.35300 9.29470 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010912 B = 0.003050 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.260033 B = 9177.271470 C =10753.787470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 H 0.075 0.925 4 C -0.145 4.145 5 C -0.149 4.149 6 C 0.075 3.925 7 H 0.089 0.911 8 C -0.088 4.088 9 C -0.129 4.129 10 C 0.504 3.496 11 O -0.596 6.596 12 N -0.698 5.698 13 C 0.126 3.874 14 C 0.186 3.814 15 N -0.711 5.711 16 C -0.215 4.215 17 H 0.062 0.938 18 C -0.057 4.057 19 N -0.956 5.956 20 Si 0.945 3.055 21 H -0.294 1.294 22 H -0.297 1.297 23 H -0.281 1.281 24 C -0.152 4.152 25 C 0.076 3.924 26 O -0.396 6.396 27 C 0.064 3.936 28 C -0.143 4.143 29 O -0.400 6.400 30 H 0.051 0.949 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.100 0.900 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.120 0.880 40 H 0.086 0.914 41 H 0.406 0.594 42 H 0.065 0.935 43 H 0.031 0.969 44 H 0.378 0.622 45 H 0.248 0.752 46 H 0.079 0.921 47 H 0.058 0.942 48 H 0.035 0.965 49 H 0.100 0.900 50 H 0.037 0.963 51 H 0.114 0.886 52 H 0.081 0.919 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.843 2.966 15.786 18.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.003 3.997 3 H 0.093 0.907 4 C -0.183 4.183 5 C -0.186 4.186 6 C 0.018 3.982 7 H 0.106 0.894 8 C -0.126 4.126 9 C -0.169 4.169 10 C 0.292 3.708 11 O -0.478 6.478 12 N -0.347 5.347 13 C 0.000 4.000 14 C 0.096 3.904 15 N -0.352 5.352 16 C -0.347 4.347 17 H 0.080 0.920 18 C -0.251 4.251 19 N -0.607 5.607 20 Si 0.777 3.223 21 H -0.222 1.222 22 H -0.223 1.223 23 H -0.207 1.207 24 C -0.192 4.192 25 C -0.001 4.001 26 O -0.315 6.315 27 C -0.012 4.012 28 C -0.181 4.181 29 O -0.321 6.321 30 H 0.070 0.930 31 H 0.109 0.891 32 H 0.068 0.932 33 H 0.113 0.887 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.119 0.881 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.138 0.862 40 H 0.105 0.895 41 H 0.242 0.758 42 H 0.083 0.917 43 H 0.050 0.950 44 H 0.211 0.789 45 H 0.057 0.943 46 H 0.097 0.903 47 H 0.076 0.924 48 H 0.054 0.946 49 H 0.118 0.882 50 H 0.055 0.945 51 H 0.132 0.868 52 H 0.099 0.901 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.735 2.020 15.745 18.119 hybrid contribution -1.880 0.228 -0.336 1.924 sum 6.855 2.248 15.409 17.014 Atomic orbital electron populations 1.21963 0.93881 1.02262 1.02796 1.22929 0.95366 0.96170 0.85238 0.90748 1.23003 1.00530 0.97417 0.97330 1.23158 1.01401 0.98831 0.95245 1.23284 0.87992 0.93348 0.93579 0.89352 1.21293 1.02102 0.96477 0.92768 1.21590 1.04475 0.96265 0.94523 1.21230 0.75434 0.90902 0.83211 1.90616 1.54753 1.24846 1.77596 1.45759 1.68927 1.10898 1.09157 1.21627 0.98827 0.89005 0.90575 1.20042 0.87794 0.91991 0.90613 1.42464 1.02318 1.10557 1.79896 1.19133 0.85121 0.92296 1.38126 0.91983 1.25144 0.99816 0.95904 1.04199 1.69721 1.29081 1.04767 1.57140 0.85643 0.82174 0.77175 0.77319 1.22182 1.22331 1.20747 1.22452 1.01478 0.98551 0.96759 1.22367 0.87498 0.93841 0.96404 1.87802 1.38167 1.38754 1.66824 1.22590 1.02098 0.87718 0.88833 1.22314 0.96974 1.00547 0.98222 1.88942 1.40564 1.68019 1.34579 0.93002 0.89081 0.93196 0.88746 0.89733 0.91480 0.88111 0.93333 0.89242 0.86216 0.89536 0.75800 0.91693 0.95036 0.78854 0.94311 0.90270 0.92361 0.94613 0.88202 0.94485 0.86836 0.90056 0.89158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.36 71.98 0.67 -2.12 16 2 C 0.06 1.15 4.06 30.97 0.13 1.28 16 3 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 4 C -0.15 -2.05 6.64 31.59 0.21 -1.84 16 5 C -0.15 -2.45 6.59 31.89 0.21 -2.23 16 6 C 0.07 1.57 3.33 31.28 0.10 1.68 16 7 H 0.09 1.51 8.14 -2.39 -0.02 1.50 16 8 C -0.09 -2.28 4.28 30.59 0.13 -2.15 16 9 C -0.13 -3.56 5.62 29.85 0.17 -3.40 16 10 C 0.50 17.87 7.83 87.66 0.69 18.56 16 11 O -0.60 -25.15 15.98 -3.05 -0.05 -25.20 16 12 N -0.70 -24.17 5.16 -463.06 -2.39 -26.56 16 13 C 0.13 4.56 4.32 86.38 0.37 4.93 16 14 C 0.19 6.45 0.41 3.73 0.00 6.45 16 15 N -0.71 -30.86 3.77 -302.80 -1.14 -32.00 16 16 C -0.21 -10.97 8.70 84.04 0.73 -10.23 16 17 H 0.06 3.23 6.76 -2.91 -0.02 3.21 16 18 C -0.06 -3.14 5.50 84.86 0.47 -2.68 16 19 N -0.96 -54.88 13.07 21.65 0.28 -54.60 16 20 Si 0.95 46.27 29.55 68.60 2.03 48.30 16 21 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 22 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 23 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 24 C -0.15 -5.07 4.82 30.69 0.15 -4.92 16 25 C 0.08 2.50 6.68 72.01 0.48 2.99 16 26 O -0.40 -12.72 10.77 -148.98 -1.60 -14.32 16 27 C 0.06 1.85 6.67 72.01 0.48 2.33 16 28 C -0.14 -3.96 4.80 30.69 0.15 -3.81 16 29 O -0.40 -10.57 10.56 -148.98 -1.57 -12.14 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 1.07 7.70 -2.38 -0.02 1.05 16 35 H 0.07 1.26 8.06 -2.39 -0.02 1.24 16 36 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.05 1.52 8.10 -2.39 -0.02 1.50 16 38 H 0.09 2.13 8.10 -2.39 -0.02 2.11 16 39 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.09 2.69 7.92 -2.39 -0.02 2.67 16 41 H 0.41 13.36 7.31 -92.71 -0.68 12.68 16 42 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.03 1.36 7.55 -2.39 -0.02 1.34 16 44 H 0.38 17.60 6.73 -92.71 -0.62 16.97 16 45 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 46 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 47 H 0.06 2.14 7.13 -2.39 -0.02 2.13 16 48 H 0.04 1.41 7.75 -2.39 -0.02 1.39 16 49 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 50 H 0.04 1.24 7.09 -2.39 -0.02 1.22 16 51 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 52 H 0.08 2.09 7.21 -2.39 -0.02 2.08 16 53 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -67.09 411.32 0.29 -66.81 By element: Atomic # 1 Polarization: 45.30 SS G_CDS: -0.41 Total: 44.90 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 5.14 Total: 4.83 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -3.25 Total: -113.16 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: -3.23 Total: -51.66 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -67.09 0.29 -66.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569735989.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.945 kcal (2) G-P(sol) polarization free energy of solvation -67.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds