Wall clock time and date at job start Tue Mar 31 2020 23:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.27423 * 2 1 4 4 C 1.54946 * 110.30915 * 122.09190 * 2 1 3 5 5 C 1.55299 * 100.94310 * 155.35918 * 4 2 1 6 6 C 1.54383 * 102.25083 * 325.86539 * 5 4 2 7 7 H 1.08994 * 109.83116 * 261.74633 * 6 5 4 8 8 C 1.53004 * 109.82798 * 140.86879 * 6 5 4 9 9 C 1.52998 * 109.47116 * 174.99960 * 8 6 5 10 10 C 1.50701 * 109.47038 * 179.97438 * 9 8 6 11 11 O 1.21274 * 120.00230 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99629 * 179.97438 * 10 9 8 13 13 C 1.46503 * 119.99712 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.47134 * 176.15127 * 13 12 10 15 15 N 1.46498 * 109.53987 * 54.89072 * 14 13 12 16 16 C 1.36941 * 120.00245 * 62.80787 * 15 14 13 17 17 H 1.08001 * 119.99670 * 353.62699 * 16 15 14 18 18 C 1.38804 * 119.99987 * 173.35186 * 16 15 14 19 19 N 1.31621 * 119.99675 * 180.27340 * 18 16 15 20 20 Si 1.86802 * 120.00245 * 0.27681 * 18 16 15 21 21 H 1.48494 * 109.47070 * 89.99787 * 20 18 16 22 22 H 1.48507 * 109.46818 * 209.99842 * 20 18 16 23 23 H 1.48500 * 109.46909 * 329.99804 * 20 18 16 24 24 C 1.53173 * 109.54248 * 175.06776 * 14 13 12 25 25 C 1.53286 * 109.06022 * 176.85146 * 24 14 13 26 26 O 1.42897 * 109.46184 * 302.44543 * 25 24 14 27 27 C 1.42911 * 114.09831 * 61.15798 * 26 25 24 28 28 C 1.53088 * 109.41602 * 298.84455 * 27 26 25 29 29 O 1.43236 * 107.58963 * 21.35698 * 6 5 4 30 30 H 1.09002 * 109.46962 * 297.91012 * 1 2 3 31 31 H 1.09004 * 109.46948 * 57.90709 * 1 2 3 32 32 H 1.08998 * 109.47269 * 177.90635 * 1 2 3 33 33 H 1.09001 * 111.12552 * 37.43896 * 4 2 1 34 34 H 1.09000 * 111.12512 * 273.28489 * 4 2 1 35 35 H 1.09001 * 110.84581 * 207.67740 * 5 4 2 36 36 H 1.09004 * 111.02176 * 84.13705 * 5 4 2 37 37 H 1.09003 * 109.47164 * 55.00322 * 8 6 5 38 38 H 1.09001 * 109.47474 * 295.00289 * 8 6 5 39 39 H 1.08996 * 109.47190 * 60.00078 * 9 8 6 40 40 H 1.09001 * 109.47217 * 300.00486 * 9 8 6 41 41 H 0.96995 * 120.00063 * 0.02562 * 12 10 9 42 42 H 1.08998 * 109.47000 * 56.15493 * 13 12 10 43 43 H 1.08993 * 109.47113 * 296.15104 * 13 12 10 44 44 H 0.97008 * 120.00273 * 242.80336 * 15 14 13 45 45 H 0.97006 * 119.99608 * 179.97438 * 19 18 16 46 46 H 1.08997 * 109.52457 * 296.84452 * 24 14 13 47 47 H 1.09002 * 109.51949 * 57.03641 * 24 14 13 48 48 H 1.09006 * 109.45430 * 182.44924 * 25 24 14 49 49 H 1.09002 * 109.46430 * 62.44928 * 25 24 14 50 50 H 1.08993 * 109.47963 * 178.85692 * 27 26 25 51 51 H 1.09002 * 109.48812 * 58.82926 * 27 26 25 52 52 H 1.09010 * 109.51887 * 297.70196 * 28 27 26 53 53 H 1.08993 * 109.57634 * 177.54291 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0679 -0.7720 1.2311 5 6 3.4699 -1.2019 0.7201 6 6 3.2112 -1.4427 -0.7828 7 1 3.0641 -2.5069 -0.9668 8 6 4.3991 -0.9340 -1.6019 9 6 4.1912 -1.2879 -3.0758 10 6 5.3609 -0.7863 -3.8827 11 8 6.2714 -0.2035 -3.3331 12 7 5.3956 -0.9862 -5.2152 13 6 6.5330 -0.4990 -5.9996 14 6 6.3724 -0.9366 -7.4569 15 7 5.0747 -0.4838 -7.9642 16 6 4.7985 0.8553 -8.0400 17 1 5.4936 1.5740 -7.6316 18 6 3.6280 1.2892 -8.6469 19 7 3.3651 2.5766 -8.7245 20 14 2.4258 0.0462 -9.3533 21 1 1.4458 -0.3439 -8.3080 22 1 1.7078 0.6508 -10.5041 23 1 3.1681 -1.1564 -9.8094 24 6 7.4944 -0.3257 -8.3020 25 6 7.3691 -0.8336 -9.7428 26 8 7.4205 -2.2616 -9.7504 27 6 6.3677 -2.8873 -9.0139 28 6 6.4525 -2.4637 -7.5452 29 8 2.0286 -0.7178 -1.1400 30 1 -0.3633 0.4810 0.9082 31 1 -0.3633 0.5460 -0.8707 32 1 -0.3634 -1.0269 -0.0375 33 1 1.4471 -1.6403 1.4522 34 1 2.1496 -0.1185 2.0996 35 1 3.7965 -2.1196 1.2094 36 1 4.2001 -0.4058 0.8654 37 1 5.3156 -1.4014 -1.2419 38 1 4.4771 0.1480 -1.4956 39 1 3.2747 -0.8205 -3.4360 40 1 4.1132 -2.3699 -3.1822 41 1 4.6676 -1.4526 -5.6547 42 1 7.4569 -0.9131 -5.5957 43 1 6.5699 0.5891 -5.9489 44 1 4.4111 -1.1326 -8.2465 45 1 2.5473 2.8798 -9.1489 46 1 7.4106 0.7610 -8.2879 47 1 8.4606 -0.6228 -7.8941 48 1 8.1902 -0.4371 -10.3402 49 1 6.4200 -0.5017 -10.1637 50 1 6.4672 -3.9702 -9.0862 51 1 5.4053 -2.5824 -9.4250 52 1 7.3978 -2.8038 -7.1221 53 1 5.6251 -2.9046 -6.9895 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569735991.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:33 Heat of formation + Delta-G solvation = -156.117322 kcal Electronic energy + Delta-G solvation = -31167.065787 eV Core-core repulsion = 27037.333773 eV Total energy + Delta-G solvation = -4129.732014 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.22640 -40.67108 -40.05251 -37.41296 -35.15110 -34.83956 -33.91156 -33.18345 -32.02163 -31.76428 -31.52316 -28.72854 -27.01835 -25.69360 -24.57661 -24.11594 -23.14368 -22.44124 -21.49522 -21.04670 -20.06475 -19.81661 -18.15458 -17.97338 -17.14551 -17.04000 -16.90933 -16.74573 -16.42574 -16.18633 -15.99423 -15.58816 -15.28837 -14.96008 -14.75145 -14.64814 -14.47917 -14.20832 -14.14389 -13.95523 -13.59998 -13.31157 -13.21698 -13.19734 -12.96690 -12.87554 -12.70979 -12.65289 -12.60047 -12.21537 -12.17701 -12.03494 -11.79462 -11.75849 -11.68514 -11.60922 -11.45680 -11.21438 -11.03068 -10.80601 -10.43600 -10.38949 -9.93203 -9.31780 -7.97581 -5.33160 1.37462 1.41155 1.48463 1.72076 2.36070 2.50218 2.86328 3.03081 3.31961 3.46151 3.60027 3.71196 3.80495 3.85108 3.89055 3.93113 4.08394 4.13355 4.17995 4.19642 4.32213 4.38599 4.41752 4.48762 4.56029 4.60412 4.69589 4.71583 4.74031 4.77010 4.80492 4.84128 4.85069 4.91442 4.97175 4.99596 5.05250 5.06107 5.14432 5.16956 5.23344 5.25042 5.26728 5.30047 5.37176 5.58607 5.83553 6.20431 6.24505 6.32642 6.66865 7.10770 7.33925 7.82002 8.03002 9.23852 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011904 B = 0.002943 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.614247 B = 9512.008322 C =10905.494729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.061 3.939 3 H 0.057 0.943 4 C -0.142 4.142 5 C -0.150 4.150 6 C 0.079 3.921 7 H 0.097 0.903 8 C -0.105 4.105 9 C -0.128 4.128 10 C 0.504 3.496 11 O -0.595 6.595 12 N -0.702 5.702 13 C 0.127 3.873 14 C 0.192 3.808 15 N -0.733 5.733 16 C -0.207 4.207 17 H 0.052 0.948 18 C -0.059 4.059 19 N -0.985 5.985 20 Si 0.945 3.055 21 H -0.279 1.279 22 H -0.307 1.307 23 H -0.246 1.246 24 C -0.150 4.150 25 C 0.075 3.925 26 O -0.394 6.394 27 C 0.060 3.940 28 C -0.145 4.145 29 O -0.399 6.399 30 H 0.087 0.913 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.044 0.956 39 H 0.090 0.910 40 H 0.122 0.878 41 H 0.407 0.593 42 H 0.068 0.932 43 H 0.024 0.976 44 H 0.367 0.633 45 H 0.254 0.746 46 H 0.053 0.947 47 H 0.080 0.920 48 H 0.099 0.901 49 H 0.037 0.963 50 H 0.119 0.881 51 H 0.039 0.961 52 H 0.093 0.907 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.440 -15.902 15.922 22.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.004 3.996 3 H 0.075 0.925 4 C -0.180 4.180 5 C -0.187 4.187 6 C 0.022 3.978 7 H 0.114 0.886 8 C -0.144 4.144 9 C -0.168 4.168 10 C 0.292 3.708 11 O -0.477 6.477 12 N -0.352 5.352 13 C 0.001 3.999 14 C 0.102 3.898 15 N -0.377 5.377 16 C -0.338 4.338 17 H 0.070 0.930 18 C -0.250 4.250 19 N -0.636 5.636 20 Si 0.773 3.227 21 H -0.205 1.205 22 H -0.235 1.235 23 H -0.170 1.170 24 C -0.190 4.190 25 C -0.001 4.001 26 O -0.314 6.314 27 C -0.017 4.017 28 C -0.183 4.183 29 O -0.320 6.320 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.121 0.879 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.063 0.937 39 H 0.108 0.892 40 H 0.140 0.860 41 H 0.243 0.757 42 H 0.087 0.913 43 H 0.043 0.957 44 H 0.202 0.798 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.099 0.901 48 H 0.117 0.883 49 H 0.056 0.944 50 H 0.136 0.864 51 H 0.057 0.943 52 H 0.111 0.889 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.288 -15.387 15.990 22.192 hybrid contribution -1.336 0.656 -0.719 1.653 sum -1.048 -14.731 15.270 21.243 Atomic orbital electron populations 1.21876 0.92955 1.02933 1.02721 1.23143 0.95587 0.95405 0.85511 0.92503 1.23291 0.95759 1.01159 0.97780 1.23180 0.98021 1.03657 0.93874 1.22877 0.84165 0.96463 0.94339 0.88570 1.21669 0.98420 1.01076 0.93188 1.21610 0.95677 1.04153 0.95354 1.21329 0.88263 0.78587 0.82649 1.90626 1.40841 1.44395 1.71827 1.45765 1.24125 1.58305 1.06957 1.21582 0.88650 0.97457 0.92244 1.20000 0.85734 0.93908 0.90139 1.42727 1.13909 1.03145 1.77875 1.18696 1.02992 0.83424 1.28647 0.93041 1.25399 1.00631 0.97006 1.01988 1.69895 1.27211 1.14952 1.51526 0.85580 0.79626 0.79731 0.77785 1.20494 1.23512 1.17006 1.22424 0.98850 1.00750 0.96980 1.22390 1.01455 0.80386 0.95909 1.87824 1.50866 1.19390 1.73274 1.22681 0.90080 0.98617 0.90307 1.22371 1.04520 0.93239 0.98201 1.88450 1.42691 1.65083 1.35736 0.89396 0.93276 0.91654 0.89189 0.88587 0.87923 0.90849 0.89919 0.93661 0.89167 0.86018 0.75678 0.91344 0.95716 0.79848 0.93754 0.92832 0.90143 0.88320 0.94447 0.86360 0.94310 0.88878 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.62 71.98 0.69 -1.71 16 2 C 0.06 1.16 4.08 31.26 0.13 1.29 16 3 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 4 C -0.14 -1.87 6.57 32.05 0.21 -1.66 16 5 C -0.15 -2.17 6.55 31.85 0.21 -1.97 16 6 C 0.08 1.52 3.51 31.07 0.11 1.63 16 7 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 8 C -0.11 -2.54 4.07 30.59 0.12 -2.42 16 9 C -0.13 -3.26 5.61 29.85 0.17 -3.09 16 10 C 0.50 16.93 7.83 87.66 0.69 17.62 16 11 O -0.60 -24.50 15.98 -3.01 -0.05 -24.55 16 12 N -0.70 -22.82 5.13 -463.05 -2.37 -25.19 16 13 C 0.13 4.52 4.38 86.38 0.38 4.90 16 14 C 0.19 6.38 0.41 3.72 0.00 6.39 16 15 N -0.73 -29.49 3.39 -302.81 -1.03 -30.52 16 16 C -0.21 -10.79 9.15 84.03 0.77 -10.02 16 17 H 0.05 3.09 7.01 -2.91 -0.02 3.07 16 18 C -0.06 -3.31 5.50 84.86 0.47 -2.85 16 19 N -0.99 -62.03 13.97 21.65 0.30 -61.73 16 20 Si 0.94 43.09 27.68 68.60 1.90 44.99 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 22 H -0.31 -14.83 7.11 99.48 0.71 -14.12 16 23 H -0.25 -9.81 6.61 99.48 0.66 -9.15 16 24 C -0.15 -5.07 4.79 30.75 0.15 -4.92 16 25 C 0.08 2.47 6.68 72.08 0.48 2.95 16 26 O -0.39 -12.01 10.77 -148.98 -1.60 -13.61 16 27 C 0.06 1.53 6.67 72.01 0.48 2.02 16 28 C -0.15 -3.63 4.79 30.68 0.15 -3.48 16 29 O -0.40 -9.76 10.34 -148.98 -1.54 -11.30 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.09 0.98 8.06 -2.39 -0.02 0.97 16 34 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.16 7.85 -2.39 -0.02 1.15 16 37 H 0.08 1.89 8.10 -2.39 -0.02 1.87 16 38 H 0.04 1.34 8.10 -2.39 -0.02 1.32 16 39 H 0.09 2.51 7.90 -2.39 -0.02 2.49 16 40 H 0.12 2.22 8.14 -2.39 -0.02 2.21 16 41 H 0.41 11.89 7.42 -92.71 -0.69 11.20 16 42 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.02 1.09 7.49 -2.39 -0.02 1.07 16 44 H 0.37 14.06 4.77 -92.70 -0.44 13.61 16 45 H 0.25 15.44 8.31 -92.70 -0.77 14.66 16 46 H 0.05 2.13 7.17 -2.39 -0.02 2.11 16 47 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 48 H 0.10 2.87 8.14 -2.38 -0.02 2.85 16 49 H 0.04 1.44 7.75 -2.39 -0.02 1.42 16 50 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 51 H 0.04 1.11 7.16 -2.39 -0.02 1.10 16 52 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 53 H 0.09 1.92 7.38 -2.39 -0.02 1.90 16 Total: -1.00 -73.24 408.59 0.52 -72.72 By element: Atomic # 1 Polarization: 44.79 SS G_CDS: -0.29 Total: 44.50 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 5.20 Total: 4.68 kcal Atomic # 7 Polarization: -114.34 SS G_CDS: -3.10 Total: -117.43 kcal Atomic # 8 Polarization: -46.27 SS G_CDS: -3.19 Total: -49.46 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.90 Total: 44.99 kcal Total: -73.24 0.52 -72.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569735991.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.393 kcal (2) G-P(sol) polarization free energy of solvation -73.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds