Wall clock time and date at job start Tue Mar 31 2020 23:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.33267 * 2 1 4 4 C 1.54475 * 110.37460 * 122.37160 * 2 1 3 5 5 C 1.54508 * 104.06639 * 142.80929 * 4 2 1 6 6 C 1.54482 * 104.06183 * 0.02562 * 5 4 2 7 7 H 1.08997 * 110.37900 * 94.85107 * 6 5 4 8 8 C 1.53002 * 110.37187 * 217.19399 * 6 5 4 9 9 C 1.53000 * 109.47076 * 181.83312 * 8 6 5 10 10 C 1.50701 * 109.46868 * 179.97438 * 9 8 6 11 11 O 1.21277 * 120.00363 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99916 * 179.97438 * 10 9 8 13 13 C 1.46502 * 120.00227 * 174.69503 * 12 10 9 14 14 C 1.52996 * 109.54310 * 304.10399 * 13 12 10 15 15 N 1.46508 * 109.47030 * 305.58226 * 14 13 12 16 16 C 1.36934 * 120.00234 * 175.03030 * 15 14 13 17 17 H 1.08001 * 119.99854 * 359.97438 * 16 15 14 18 18 C 1.38805 * 120.00398 * 179.97438 * 16 15 14 19 19 N 1.31618 * 119.99873 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00367 * 179.97438 * 18 16 15 21 21 H 1.48510 * 109.46913 * 90.00071 * 20 18 16 22 22 H 1.48497 * 109.47147 * 209.99791 * 20 18 16 23 23 H 1.48503 * 109.47203 * 330.00434 * 20 18 16 24 24 C 1.53178 * 109.54599 * 183.92467 * 13 12 10 25 25 C 1.53281 * 109.06255 * 297.03154 * 24 13 12 26 26 O 1.42906 * 109.46147 * 302.44427 * 25 24 13 27 27 C 1.42898 * 114.09650 * 61.15796 * 26 25 24 28 28 C 1.53097 * 109.41673 * 298.84341 * 27 26 25 29 29 O 1.44425 * 110.37342 * 237.74961 * 2 1 3 30 30 H 1.09007 * 109.47007 * 180.79943 * 1 2 3 31 31 H 1.09000 * 109.47281 * 60.79485 * 1 2 3 32 32 H 1.09007 * 109.47096 * 300.79544 * 1 2 3 33 33 H 1.09005 * 110.51130 * 261.45250 * 4 2 1 34 34 H 1.09000 * 110.51201 * 24.16353 * 4 2 1 35 35 H 1.08991 * 110.51262 * 241.35612 * 5 4 2 36 36 H 1.09001 * 110.63060 * 118.69642 * 5 4 2 37 37 H 1.08999 * 109.46592 * 301.83104 * 8 6 5 38 38 H 1.08997 * 109.47201 * 61.82934 * 8 6 5 39 39 H 1.08998 * 109.46827 * 299.99061 * 9 8 6 40 40 H 1.08997 * 109.47414 * 59.99752 * 9 8 6 41 41 H 0.97003 * 119.99975 * 354.69683 * 12 10 9 42 42 H 1.08999 * 109.47244 * 65.57526 * 14 13 12 43 43 H 1.08996 * 109.47437 * 185.58610 * 14 13 12 44 44 H 0.96999 * 119.99538 * 355.02099 * 15 14 13 45 45 H 0.97002 * 120.00617 * 179.97438 * 19 18 16 46 46 H 1.09004 * 109.52271 * 57.01405 * 24 13 12 47 47 H 1.08991 * 109.52383 * 177.20822 * 24 13 12 48 48 H 1.09003 * 109.45693 * 182.44872 * 25 24 13 49 49 H 1.09004 * 109.46613 * 62.44844 * 25 24 13 50 50 H 1.08999 * 109.48080 * 178.86391 * 27 26 25 51 51 H 1.09003 * 109.49404 * 58.83544 * 27 26 25 52 52 H 1.09000 * 109.51962 * 297.70492 * 28 27 26 53 53 H 1.08998 * 109.57525 * 177.54629 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0678 -0.7753 1.2231 5 6 3.3178 -1.5064 0.6842 6 6 3.3877 -1.0858 -0.8006 7 1 4.0529 -0.2309 -0.9219 8 6 3.8604 -2.2569 -1.6642 9 6 3.9660 -1.8053 -3.1223 10 6 4.4321 -2.9587 -3.9728 11 8 4.6582 -4.0357 -3.4630 12 7 4.5979 -2.7935 -5.3001 13 6 5.1610 -3.8776 -6.1086 14 6 6.5203 -4.2881 -5.5390 15 7 7.3848 -3.1093 -5.4411 16 6 8.6211 -3.2131 -4.8615 17 1 8.9588 -4.1639 -4.4762 18 6 9.4404 -2.0964 -4.7692 19 7 9.0292 -0.9379 -5.2392 20 14 11.1266 -2.2379 -3.9780 21 1 12.1326 -2.5826 -5.0147 22 1 11.4884 -0.9424 -3.3487 23 1 11.0996 -3.3013 -2.9417 24 6 5.3337 -3.4021 -7.5545 25 6 3.9568 -3.0687 -8.1397 26 8 3.1141 -4.2200 -8.0599 27 6 2.8803 -4.6808 -6.7276 28 6 4.2119 -5.0797 -6.0861 29 8 2.0327 -0.7225 -1.1450 30 1 -0.3633 -1.0276 0.0143 31 1 -0.3634 0.5014 -0.8970 32 1 -0.3634 0.5262 0.8828 33 1 2.3430 -0.0860 2.0214 34 1 1.3276 -1.4936 1.5756 35 1 3.1955 -2.5860 0.7704 36 1 4.2120 -1.1806 1.2155 37 1 4.8370 -2.5937 -1.3165 38 1 3.1454 -3.0761 -1.5884 39 1 2.9893 -1.4686 -3.4699 40 1 4.6810 -0.9862 -3.1981 41 1 4.3443 -1.9566 -5.7200 42 1 6.3833 -4.7213 -4.5482 43 1 6.9827 -5.0240 -6.1966 44 1 7.0814 -2.2553 -5.7869 45 1 9.6015 -0.1574 -5.1745 46 1 5.9645 -2.5133 -7.5727 47 1 5.7984 -4.1919 -8.1446 48 1 4.0679 -2.7710 -9.1824 49 1 3.5099 -2.2512 -7.5739 50 1 2.2159 -5.5445 -6.7530 51 1 2.4193 -3.8846 -6.1430 52 1 4.6540 -5.9034 -6.6467 53 1 4.0421 -5.3904 -5.0552 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570310330.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:09 Heat of formation + Delta-G solvation = -153.858103 kcal Electronic energy + Delta-G solvation = -31688.948811 eV Core-core repulsion = 27559.314765 eV Total energy + Delta-G solvation = -4129.634047 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.73469 -40.56610 -39.49874 -37.25629 -35.46048 -34.86046 -33.23441 -33.14037 -32.33122 -32.02696 -31.30379 -28.24199 -27.40319 -25.42709 -24.69825 -24.11837 -23.02824 -22.37649 -21.72902 -21.45488 -20.28755 -19.25866 -18.24977 -17.44355 -17.18637 -17.06425 -16.97809 -16.83352 -16.32304 -16.17941 -15.87461 -15.55692 -15.32706 -15.03760 -14.88126 -14.64875 -14.44158 -14.14184 -14.06713 -13.75791 -13.53569 -13.33986 -13.23170 -13.07901 -12.99126 -12.80638 -12.78173 -12.60332 -12.53063 -12.31534 -12.13026 -12.04960 -11.96292 -11.79757 -11.65280 -11.63156 -11.50535 -11.36064 -11.00684 -10.66506 -10.63688 -10.41207 -9.85076 -8.95471 -7.95673 -5.21717 1.44418 1.44953 1.53704 1.79910 2.29880 2.54536 2.88547 2.95899 3.36943 3.55938 3.64665 3.70235 3.78531 3.87576 3.92479 3.97872 4.01432 4.02570 4.15250 4.24547 4.28221 4.32566 4.41811 4.46405 4.51547 4.56763 4.66243 4.69036 4.74995 4.77941 4.79982 4.80788 4.86567 4.87624 4.95372 4.97642 5.08375 5.10091 5.11542 5.15338 5.18547 5.20259 5.22217 5.26198 5.31641 5.46464 5.70177 6.00412 6.24291 6.26811 6.68889 7.34606 7.41924 8.07704 8.37545 9.26944 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007545 B = 0.003880 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3710.115113 B = 7215.357504 C =10058.994518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.059 3.941 3 H 0.073 0.927 4 C -0.145 4.145 5 C -0.153 4.153 6 C 0.077 3.923 7 H 0.071 0.929 8 C -0.086 4.086 9 C -0.129 4.129 10 C 0.519 3.481 11 O -0.571 6.571 12 N -0.708 5.708 13 C 0.180 3.820 14 C 0.145 3.855 15 N -0.726 5.726 16 C -0.243 4.243 17 H 0.060 0.940 18 C -0.065 4.065 19 N -0.960 5.960 20 Si 0.966 3.034 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.279 1.279 24 C -0.148 4.148 25 C 0.065 3.935 26 O -0.392 6.392 27 C 0.072 3.928 28 C -0.156 4.156 29 O -0.386 6.386 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.112 0.888 40 H 0.091 0.909 41 H 0.406 0.594 42 H 0.024 0.976 43 H 0.013 0.987 44 H 0.378 0.622 45 H 0.251 0.749 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.114 0.886 49 H 0.062 0.938 50 H 0.108 0.892 51 H 0.052 0.948 52 H 0.076 0.924 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.509 2.037 5.670 20.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.001 3.999 3 H 0.091 0.909 4 C -0.182 4.182 5 C -0.191 4.191 6 C 0.020 3.980 7 H 0.089 0.911 8 C -0.124 4.124 9 C -0.169 4.169 10 C 0.307 3.693 11 O -0.450 6.450 12 N -0.360 5.360 13 C 0.094 3.906 14 C 0.017 3.983 15 N -0.369 5.369 16 C -0.375 4.375 17 H 0.078 0.922 18 C -0.257 4.257 19 N -0.611 5.611 20 Si 0.795 3.205 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.186 4.186 25 C -0.011 4.011 26 O -0.311 6.311 27 C -0.004 4.004 28 C -0.195 4.195 29 O -0.307 6.307 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.130 0.870 40 H 0.109 0.891 41 H 0.242 0.758 42 H 0.042 0.958 43 H 0.031 0.969 44 H 0.211 0.789 45 H 0.060 0.940 46 H 0.093 0.907 47 H 0.099 0.901 48 H 0.132 0.868 49 H 0.080 0.920 50 H 0.126 0.874 51 H 0.070 0.930 52 H 0.095 0.905 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.393 1.045 5.755 20.256 hybrid contribution 1.646 0.688 0.516 1.857 sum -17.747 1.733 6.271 18.902 Atomic orbital electron populations 1.21805 0.92216 1.02787 1.03182 1.23191 0.96185 0.95585 0.84897 0.90942 1.22992 0.97069 0.99898 0.98286 1.22989 0.99592 1.01658 0.94860 1.22985 0.84492 0.96420 0.94146 0.91132 1.21251 1.01372 0.96984 0.92819 1.21584 1.03809 0.96368 0.95133 1.20958 0.75970 0.89851 0.82537 1.90592 1.52050 1.29029 1.73366 1.45893 1.64479 1.17991 1.07667 1.20389 0.91795 0.87820 0.90607 1.21088 0.89514 0.89902 0.97806 1.42226 1.15366 1.07735 1.71607 1.19485 0.93337 0.94751 1.29976 0.92195 1.25357 1.01961 0.95385 1.03038 1.69765 1.38210 0.99838 1.53291 0.85261 0.80593 0.76524 0.78100 1.21368 1.21711 1.20419 1.22392 0.99441 1.03095 0.93690 1.22707 0.87975 0.87615 1.02817 1.87896 1.68600 1.47104 1.27501 1.22515 0.95214 0.99855 0.82829 1.22467 0.96916 0.97418 1.02705 1.89120 1.27160 1.74930 1.39465 0.92356 0.92181 0.89258 0.88997 0.90113 0.90956 0.89714 0.91697 0.91468 0.87004 0.89061 0.75820 0.95817 0.96885 0.78864 0.93972 0.90731 0.90147 0.86767 0.91964 0.87421 0.92950 0.90517 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.52 71.98 0.69 -1.29 16 2 C 0.06 1.02 3.92 31.09 0.12 1.14 16 3 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 4 C -0.14 -2.20 6.63 31.61 0.21 -1.99 16 5 C -0.15 -2.94 6.63 31.61 0.21 -2.73 16 6 C 0.08 1.79 3.28 31.10 0.10 1.89 16 7 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 8 C -0.09 -2.40 4.14 30.60 0.13 -2.28 16 9 C -0.13 -3.64 5.62 29.85 0.17 -3.47 16 10 C 0.52 17.78 7.24 87.66 0.63 18.42 16 11 O -0.57 -23.48 12.29 -3.02 -0.04 -23.52 16 12 N -0.71 -21.93 3.75 -422.39 -1.59 -23.51 16 13 C 0.18 5.96 0.32 3.72 0.00 5.97 16 14 C 0.14 6.34 4.79 86.38 0.41 6.75 16 15 N -0.73 -37.20 5.21 -343.45 -1.79 -38.99 16 16 C -0.24 -14.05 9.99 84.03 0.84 -13.21 16 17 H 0.06 3.48 7.83 -2.91 -0.02 3.45 16 18 C -0.06 -3.72 5.50 84.86 0.47 -3.26 16 19 N -0.96 -57.29 13.06 21.65 0.28 -57.01 16 20 Si 0.97 46.90 29.55 68.60 2.03 48.93 16 21 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 22 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 23 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 24 C -0.15 -4.32 4.84 30.75 0.15 -4.17 16 25 C 0.07 1.50 6.67 72.08 0.48 1.98 16 26 O -0.39 -9.97 10.77 -148.98 -1.60 -11.58 16 27 C 0.07 1.76 6.68 72.01 0.48 2.24 16 28 C -0.16 -4.63 4.82 30.69 0.15 -4.48 16 29 O -0.39 -9.13 10.69 -148.98 -1.59 -10.72 16 30 H 0.06 0.86 8.12 -2.38 -0.02 0.84 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.08 1.13 7.86 -2.39 -0.02 1.11 16 35 H 0.07 1.46 7.87 -2.39 -0.02 1.44 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 37 H 0.06 2.06 8.10 -2.39 -0.02 2.04 16 38 H 0.07 1.96 8.10 -2.39 -0.02 1.94 16 39 H 0.11 2.67 7.91 -2.39 -0.02 2.65 16 40 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.41 10.58 7.41 -92.71 -0.69 9.89 16 42 H 0.02 1.18 6.25 -2.39 -0.01 1.16 16 43 H 0.01 0.59 8.14 -2.39 -0.02 0.58 16 44 H 0.38 19.66 6.51 -92.71 -0.60 19.06 16 45 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 46 H 0.07 2.42 7.22 -2.39 -0.02 2.41 16 47 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 48 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.06 1.25 7.01 -2.39 -0.02 1.24 16 50 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 51 H 0.05 1.24 7.75 -2.39 -0.02 1.22 16 52 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 53 H 0.08 2.58 6.26 -2.39 -0.01 2.57 16 Total: -1.00 -70.26 407.45 0.55 -69.72 By element: Atomic # 1 Polarization: 45.55 SS G_CDS: -0.39 Total: 45.16 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 5.24 Total: 1.52 kcal Atomic # 7 Polarization: -116.42 SS G_CDS: -3.09 Total: -119.51 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -3.23 Total: -45.82 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -70.26 0.55 -69.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570310330.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.143 kcal (2) G-P(sol) polarization free energy of solvation -70.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds