Wall clock time and date at job start Tue Mar 31 2020 23:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.67658 * 2 1 4 4 C 1.54996 * 110.61752 * 237.02965 * 2 1 3 5 5 C 1.54813 * 102.09200 * 204.48224 * 4 2 1 6 6 C 1.54104 * 104.18870 * 20.87963 * 5 4 2 7 7 H 1.08993 * 109.87677 * 242.45982 * 6 5 4 8 8 C 1.53001 * 109.87684 * 121.45627 * 6 5 4 9 9 C 1.52998 * 109.46945 * 175.00263 * 8 6 5 10 10 C 1.50700 * 109.47168 * 180.02562 * 9 8 6 11 11 O 1.21277 * 119.99845 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00180 * 179.97438 * 10 9 8 13 13 C 1.46495 * 120.00252 * 175.34679 * 12 10 9 14 14 C 1.52999 * 109.54444 * 62.02829 * 13 12 10 15 15 N 1.46501 * 109.47142 * 58.55779 * 14 13 12 16 16 C 1.36938 * 120.00097 * 174.83437 * 15 14 13 17 17 H 1.07997 * 119.99827 * 0.02562 * 16 15 14 18 18 C 1.38808 * 120.00033 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00124 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00016 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46987 * 60.00524 * 20 18 16 22 22 H 1.48500 * 109.47257 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47464 * 300.00204 * 20 18 16 24 24 C 1.53180 * 109.61842 * 182.25204 * 13 12 10 25 25 C 1.53090 * 109.16190 * 62.93102 * 24 13 12 26 26 O 1.42901 * 109.41964 * 57.60900 * 25 24 13 27 27 C 1.42905 * 114.09559 * 298.84334 * 26 25 24 28 28 C 1.53092 * 109.41475 * 61.15729 * 27 26 25 29 29 O 1.43744 * 107.29115 * 2.03116 * 6 5 4 30 30 H 1.08997 * 109.47904 * 182.96618 * 1 2 3 31 31 H 1.09004 * 109.46995 * 302.97067 * 1 2 3 32 32 H 1.08999 * 109.47127 * 62.96687 * 1 2 3 33 33 H 1.08994 * 110.90718 * 86.27855 * 4 2 1 34 34 H 1.09001 * 110.93620 * 322.69147 * 4 2 1 35 35 H 1.09000 * 110.48035 * 262.20404 * 5 4 2 36 36 H 1.08997 * 110.60009 * 139.61639 * 5 4 2 37 37 H 1.08992 * 109.47140 * 54.99961 * 8 6 5 38 38 H 1.09003 * 109.46975 * 295.00018 * 8 6 5 39 39 H 1.08996 * 109.47412 * 59.99381 * 9 8 6 40 40 H 1.09003 * 109.47083 * 299.99688 * 9 8 6 41 41 H 0.97008 * 120.00041 * 355.34792 * 12 10 9 42 42 H 1.08999 * 109.47090 * 298.56321 * 14 13 12 43 43 H 1.09000 * 109.47316 * 178.56300 * 14 13 12 44 44 H 0.96996 * 120.00017 * 354.84040 * 15 14 13 45 45 H 0.96996 * 120.00310 * 179.97438 * 19 18 16 46 46 H 1.09002 * 109.52174 * 182.83474 * 24 13 12 47 47 H 1.08998 * 109.52054 * 303.02030 * 24 13 12 48 48 H 1.09000 * 109.47974 * 297.62266 * 25 24 13 49 49 H 1.09003 * 109.48598 * 177.60180 * 25 24 13 50 50 H 1.08996 * 109.48107 * 301.17091 * 27 26 25 51 51 H 1.09002 * 109.48626 * 181.14236 * 27 26 25 52 52 H 1.09006 * 109.51850 * 182.48752 * 28 27 26 53 53 H 1.09000 * 109.52483 * 62.29852 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0197 0.0000 4 6 2.0758 -0.7895 -1.2171 5 6 3.4794 -1.2169 -0.7233 6 6 3.3838 -1.1255 0.8120 7 1 4.0871 -0.3803 1.1834 8 6 3.6933 -2.4885 1.4346 9 6 3.7184 -2.3590 2.9589 10 6 4.0238 -3.7013 3.5721 11 8 4.2032 -4.6665 2.8601 12 7 4.0975 -3.8291 4.9117 13 6 4.2930 -5.1511 5.5118 14 6 5.6325 -5.7293 5.0512 15 7 6.7153 -4.8219 5.4389 16 6 8.0193 -5.1813 5.2256 17 1 8.2495 -6.1336 4.7710 18 6 9.0453 -4.3218 5.5935 19 7 8.7648 -3.1615 6.1479 20 14 10.8241 -4.8118 5.3017 21 1 11.0448 -5.0331 3.8499 22 1 11.7206 -3.7282 5.7786 23 1 11.1210 -6.0632 6.0440 24 6 4.2854 -5.0291 7.0387 25 6 2.9142 -4.5244 7.4957 26 8 1.9005 -5.4199 7.0346 27 6 1.8292 -5.5377 5.6122 28 6 3.1568 -6.0831 5.0795 29 8 2.0383 -0.7353 1.1338 30 1 -0.3635 -1.0262 0.0532 31 1 -0.3633 0.5593 0.8622 32 1 -0.3633 0.4671 -0.9154 33 1 2.1509 -0.1478 -2.0949 34 1 1.4551 -1.6607 -1.4263 35 1 4.2406 -0.5334 -1.0996 36 1 3.6997 -2.2389 -1.0317 37 1 4.6648 -2.8361 1.0834 38 1 2.9243 -3.2040 1.1433 39 1 2.7469 -2.0112 3.3100 40 1 4.4874 -1.6435 3.2501 41 1 4.0212 -3.0456 5.4786 42 1 5.6253 -5.8440 3.9673 43 1 5.7884 -6.7017 5.5183 44 1 6.5086 -3.9666 5.8469 45 1 9.4817 -2.5610 6.4053 46 1 4.4810 -6.0050 7.4831 47 1 5.0558 -4.3244 7.3516 48 1 2.7367 -3.5311 7.0836 49 1 2.8889 -4.4762 8.5844 50 1 1.6374 -4.5576 5.1754 51 1 1.0222 -6.2195 5.3438 52 1 3.1199 -6.1321 3.9912 53 1 3.3296 -7.0803 5.4843 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570310333.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:21 Heat of formation + Delta-G solvation = -153.997835 kcal Electronic energy + Delta-G solvation = -31599.697151 eV Core-core repulsion = 27470.057046 eV Total energy + Delta-G solvation = -4129.640106 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.76007 -40.58304 -39.49866 -37.27676 -35.46786 -34.85300 -33.25066 -33.15453 -32.33305 -32.03114 -31.29437 -28.25682 -27.39205 -25.43759 -24.71826 -24.10561 -23.02244 -22.22597 -21.87503 -21.47876 -20.30746 -19.27656 -18.22963 -17.46645 -17.18821 -17.10645 -16.98403 -16.82927 -16.33323 -16.14650 -15.82548 -15.53017 -15.29499 -15.05567 -14.97123 -14.76768 -14.33057 -14.11344 -13.97968 -13.73705 -13.56451 -13.37430 -13.21836 -13.09551 -12.97008 -12.82778 -12.76679 -12.70489 -12.54070 -12.32243 -12.15634 -12.04473 -11.96844 -11.79511 -11.69722 -11.61696 -11.46801 -11.35738 -11.01936 -10.66617 -10.56671 -10.40690 -9.87133 -8.95527 -7.96189 -5.22478 1.44150 1.46586 1.52722 1.78638 2.26284 2.54297 2.87034 2.95529 3.36121 3.55012 3.65212 3.68767 3.78841 3.87898 3.91726 3.98174 4.00948 4.02924 4.17006 4.23904 4.28613 4.31069 4.42657 4.46611 4.53065 4.58672 4.67920 4.70059 4.75093 4.77591 4.79074 4.81574 4.84426 4.87164 4.94285 4.98653 5.07336 5.09940 5.11751 5.16743 5.18623 5.21555 5.23384 5.29174 5.32908 5.45594 5.69465 6.07477 6.23885 6.26236 6.67304 7.33762 7.39760 8.07418 8.36772 9.26408 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008693 B = 0.003443 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3220.333867 B = 8130.483992 C =10537.598010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.062 3.938 3 H 0.076 0.924 4 C -0.145 4.145 5 C -0.155 4.155 6 C 0.079 3.921 7 H 0.072 0.928 8 C -0.091 4.091 9 C -0.129 4.129 10 C 0.514 3.486 11 O -0.571 6.571 12 N -0.709 5.709 13 C 0.181 3.819 14 C 0.145 3.855 15 N -0.728 5.728 16 C -0.246 4.246 17 H 0.062 0.938 18 C -0.067 4.067 19 N -0.962 5.962 20 Si 0.969 3.031 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.280 1.280 24 C -0.146 4.146 25 C 0.066 3.934 26 O -0.393 6.393 27 C 0.073 3.927 28 C -0.157 4.157 29 O -0.389 6.389 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.112 0.888 40 H 0.096 0.904 41 H 0.406 0.594 42 H 0.019 0.981 43 H 0.017 0.983 44 H 0.378 0.622 45 H 0.252 0.748 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.063 0.937 49 H 0.113 0.887 50 H 0.053 0.947 51 H 0.108 0.892 52 H 0.078 0.922 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.517 7.126 -8.849 22.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.005 3.995 3 H 0.094 0.906 4 C -0.183 4.183 5 C -0.192 4.192 6 C 0.021 3.979 7 H 0.090 0.910 8 C -0.130 4.130 9 C -0.169 4.169 10 C 0.302 3.698 11 O -0.450 6.450 12 N -0.361 5.361 13 C 0.094 3.906 14 C 0.017 3.983 15 N -0.371 5.371 16 C -0.378 4.378 17 H 0.080 0.920 18 C -0.260 4.260 19 N -0.612 5.612 20 Si 0.798 3.202 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.206 1.206 24 C -0.184 4.184 25 C -0.011 4.011 26 O -0.311 6.311 27 C -0.004 4.004 28 C -0.196 4.196 29 O -0.309 6.309 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.130 0.870 40 H 0.114 0.886 41 H 0.242 0.758 42 H 0.037 0.963 43 H 0.035 0.965 44 H 0.211 0.789 45 H 0.061 0.939 46 H 0.096 0.904 47 H 0.092 0.908 48 H 0.081 0.919 49 H 0.131 0.869 50 H 0.071 0.929 51 H 0.126 0.874 52 H 0.097 0.903 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.506 6.175 -9.078 22.383 hybrid contribution 1.859 0.336 -0.042 1.890 sum -17.646 6.511 -9.120 20.904 Atomic orbital electron populations 1.21776 0.92314 1.02701 1.03263 1.23336 0.95948 0.95481 0.84756 0.90597 1.23167 0.95394 1.00922 0.98792 1.23011 0.98807 1.03261 0.94150 1.22739 0.84677 0.95385 0.95093 0.91010 1.21404 1.01976 0.96240 0.93335 1.21615 1.04825 0.93670 0.96790 1.21094 0.75067 0.91514 0.82084 1.90607 1.50608 1.42040 1.61792 1.45949 1.73714 1.09558 1.06878 1.20382 0.93630 0.83469 0.93084 1.21106 0.87405 0.92540 0.97200 1.42245 1.01012 1.19948 1.73912 1.19485 0.84730 1.01093 1.32506 0.92001 1.25408 1.01469 0.96869 1.02234 1.69761 1.32096 1.10522 1.48844 0.85292 0.80388 0.76937 0.77607 1.21096 1.21593 1.20601 1.22325 0.99337 1.03690 0.93098 1.22670 0.85119 0.92426 1.00838 1.87894 1.55216 1.66145 1.21887 1.22518 0.96310 1.00925 0.80644 1.22459 0.95181 0.99191 1.02764 1.88866 1.28005 1.73832 1.40230 0.92537 0.92071 0.89241 0.88427 0.90721 0.89454 0.90687 0.91645 0.91753 0.86975 0.88561 0.75758 0.96301 0.96540 0.78904 0.93939 0.90416 0.90802 0.91869 0.86905 0.92896 0.87399 0.90316 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.66 71.98 0.70 -1.16 16 2 C 0.06 0.98 3.98 31.28 0.12 1.11 16 3 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 4 C -0.15 -2.05 6.59 31.90 0.21 -1.84 16 5 C -0.15 -2.66 6.64 31.59 0.21 -2.45 16 6 C 0.08 1.66 3.41 30.97 0.11 1.77 16 7 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 8 C -0.09 -2.36 3.99 30.59 0.12 -2.24 16 9 C -0.13 -3.35 5.62 29.85 0.17 -3.19 16 10 C 0.51 16.98 7.23 87.66 0.63 17.62 16 11 O -0.57 -22.98 12.24 -3.02 -0.04 -23.02 16 12 N -0.71 -21.75 3.75 -422.39 -1.58 -23.33 16 13 C 0.18 6.04 0.32 3.73 0.00 6.04 16 14 C 0.15 6.43 4.98 86.38 0.43 6.86 16 15 N -0.73 -37.69 5.15 -343.46 -1.77 -39.46 16 16 C -0.25 -14.28 9.99 84.03 0.84 -13.44 16 17 H 0.06 3.58 7.83 -2.91 -0.02 3.56 16 18 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 19 N -0.96 -57.86 13.06 21.65 0.28 -57.58 16 20 Si 0.97 47.09 29.55 68.60 2.03 49.12 16 21 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 22 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 23 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 24 C -0.15 -4.40 4.76 30.68 0.15 -4.26 16 25 C 0.07 1.55 6.67 72.01 0.48 2.03 16 26 O -0.39 -10.16 10.77 -148.98 -1.60 -11.76 16 27 C 0.07 1.78 6.68 72.01 0.48 2.26 16 28 C -0.16 -4.69 4.74 30.69 0.15 -4.54 16 29 O -0.39 -8.57 10.54 -148.98 -1.57 -10.14 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.09 0.76 8.14 -2.39 -0.02 0.75 16 33 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 1.09 8.06 -2.39 -0.02 1.07 16 35 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.07 1.38 7.70 -2.39 -0.02 1.36 16 37 H 0.06 1.90 8.10 -2.39 -0.02 1.88 16 38 H 0.06 1.78 8.10 -2.39 -0.02 1.76 16 39 H 0.11 2.49 7.91 -2.39 -0.02 2.48 16 40 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.41 10.65 7.61 -92.70 -0.71 9.94 16 42 H 0.02 0.95 6.21 -2.39 -0.01 0.94 16 43 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.38 19.85 6.54 -92.71 -0.61 19.24 16 45 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 46 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 47 H 0.07 2.50 7.18 -2.39 -0.02 2.48 16 48 H 0.06 1.30 7.15 -2.39 -0.02 1.28 16 49 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 50 H 0.05 1.25 7.75 -2.39 -0.02 1.23 16 51 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 52 H 0.08 2.63 6.13 -2.38 -0.01 2.62 16 53 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -71.12 407.53 0.59 -70.53 By element: Atomic # 1 Polarization: 44.90 SS G_CDS: -0.41 Total: 44.48 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 5.26 Total: 1.15 kcal Atomic # 7 Polarization: -117.29 SS G_CDS: -3.07 Total: -120.37 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -3.21 Total: -44.92 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -71.12 0.59 -70.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570310333.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.471 kcal (2) G-P(sol) polarization free energy of solvation -71.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds