Wall clock time and date at job start Tue Mar 31 2020 23:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47466 * 2 1 4 4 C 1.52997 * 109.47090 * 120.00673 * 2 1 3 5 5 C 1.52995 * 109.47420 * 179.97438 * 4 2 1 6 6 C 1.53009 * 109.46795 * 299.99652 * 5 4 2 7 7 C 1.52997 * 109.46852 * 60.00000 * 6 5 4 8 8 C 1.52995 * 109.47420 * 299.99617 * 7 6 5 9 9 H 1.09004 * 109.47219 * 300.01038 * 8 7 6 10 10 O 1.42897 * 109.47573 * 180.02562 * 8 7 6 11 11 C 1.42902 * 113.99864 * 90.00287 * 10 8 7 12 12 C 1.52996 * 109.47328 * 180.02562 * 11 10 8 13 13 N 1.46498 * 109.47059 * 64.99617 * 12 11 10 14 14 C 1.34777 * 119.99828 * 179.72339 * 13 12 11 15 15 O 1.21283 * 120.00222 * 0.28168 * 14 13 12 16 16 C 1.50703 * 120.00290 * 180.27728 * 14 13 12 17 17 N 1.46896 * 109.47254 * 180.02562 * 16 14 13 18 18 C 1.47484 * 111.00020 * 265.96921 * 17 16 14 19 19 C 1.53509 * 87.93284 * 221.29938 * 18 17 16 20 20 O 1.42900 * 114.34142 * 272.36232 * 19 18 17 21 21 C 1.50701 * 114.16995 * 139.67252 * 19 18 17 22 22 H 1.08007 * 119.99986 * 266.15651 * 21 19 18 23 23 C 1.37877 * 120.00346 * 86.15699 * 21 19 18 24 24 N 1.31516 * 119.99589 * 0.02562 * 23 21 19 25 25 Si 1.86800 * 120.00294 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47310 * 89.99988 * 25 23 21 27 27 H 1.48497 * 109.46928 * 209.99961 * 25 23 21 28 28 H 1.48499 * 109.46908 * 329.99864 * 25 23 21 29 29 C 1.47482 * 110.99974 * 170.00220 * 17 16 14 30 30 H 1.09000 * 109.47892 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47049 * 300.00029 * 1 2 3 32 32 H 1.09003 * 109.46924 * 59.99506 * 1 2 3 33 33 H 1.09002 * 109.46601 * 299.99572 * 4 2 1 34 34 H 1.08996 * 109.47516 * 59.99357 * 4 2 1 35 35 H 1.08996 * 109.47190 * 59.99293 * 5 4 2 36 36 H 1.08996 * 109.47568 * 179.97438 * 5 4 2 37 37 H 1.09001 * 109.47043 * 179.97438 * 6 5 4 38 38 H 1.08996 * 109.46959 * 299.99782 * 6 5 4 39 39 H 1.09002 * 109.46601 * 179.97438 * 7 6 5 40 40 H 1.08996 * 109.47516 * 60.00124 * 7 6 5 41 41 H 1.08997 * 109.47069 * 59.99874 * 11 10 8 42 42 H 1.09008 * 109.46887 * 300.00568 * 11 10 8 43 43 H 1.09004 * 109.47066 * 304.99885 * 12 11 10 44 44 H 1.08994 * 109.46974 * 185.00032 * 12 11 10 45 45 H 0.97001 * 120.00384 * 0.02562 * 13 12 11 46 46 H 1.08998 * 109.46954 * 300.00581 * 16 14 13 47 47 H 1.09002 * 109.46946 * 59.99717 * 16 14 13 48 48 H 1.09004 * 113.47420 * 336.06685 * 18 17 16 49 49 H 1.08997 * 113.47610 * 106.52741 * 18 17 16 50 50 H 0.96696 * 114.00296 * 273.92507 * 20 19 18 51 51 H 0.96995 * 119.99896 * 180.02562 * 24 23 21 52 52 H 1.08998 * 113.47699 * 253.46796 * 29 17 16 53 53 H 1.09003 * 113.47335 * 23.93525 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5699 -0.7220 1.2489 6 6 4.0794 -1.4436 -0.0005 7 6 3.5694 -0.7222 -1.2496 8 6 2.0394 -0.7216 -1.2494 9 1 1.6757 -1.7492 -1.2491 10 8 1.5631 -0.0484 -2.4163 11 6 1.3687 -0.9055 -3.5431 12 6 0.8610 -0.0822 -4.7286 13 7 1.8950 0.8705 -5.1400 14 6 1.6705 1.7027 -6.1762 15 8 0.6107 1.6664 -6.7647 16 6 2.7365 2.6786 -6.6035 17 7 2.2507 3.4657 -7.7446 18 6 2.6713 2.8600 -9.0219 19 6 2.9704 4.2768 -9.5314 20 8 1.8516 4.9372 -10.1265 21 6 4.2302 4.3845 -10.3515 22 1 5.1610 4.6599 -9.8778 23 6 4.1946 4.1316 -11.7064 24 7 3.0610 3.7968 -12.2831 25 14 5.7562 4.2644 -12.7227 26 1 6.4444 2.9487 -12.7471 27 1 5.4114 4.6683 -14.1095 28 1 6.6543 5.2817 -12.1196 29 6 3.1627 4.5864 -8.0402 30 1 -0.3635 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6766 -0.2075 2.1391 34 1 1.6766 -1.7490 1.2491 35 1 3.9337 0.3055 1.2487 36 1 3.9333 -1.2355 2.1390 37 1 5.1694 -1.4437 -0.0009 38 1 3.7156 -2.4711 -0.0002 39 1 3.9327 -1.2361 -2.1396 40 1 3.9331 0.3053 -1.2498 41 1 0.6367 -1.6734 -3.2935 42 1 2.3148 -1.3778 -3.8078 43 1 -0.0376 0.4608 -4.4355 44 1 0.6284 -0.7476 -5.5599 45 1 2.7427 0.8995 -4.6696 46 1 2.9705 3.3469 -5.7748 47 1 3.6338 2.1322 -6.8941 48 1 3.5591 2.2337 -8.9339 49 1 1.8593 2.3683 -9.5575 50 1 1.7327 4.7405 -11.0658 51 1 3.0360 3.6184 -13.2362 52 1 2.7672 5.5579 -7.7439 53 1 4.1817 4.4208 -7.6903 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653391116.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:45 Heat of formation + Delta-G solvation = -139.111125 kcal Electronic energy + Delta-G solvation = -29998.853064 eV Core-core repulsion = 25869.858494 eV Total energy + Delta-G solvation = -4128.994570 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.32774 -40.50667 -39.96347 -37.75561 -36.21951 -35.55611 -34.09161 -33.48111 -31.94414 -30.90624 -29.72607 -27.89298 -27.02420 -26.69359 -24.83665 -23.62072 -22.94119 -22.16900 -21.51838 -20.73931 -20.52955 -19.28465 -18.07763 -17.95989 -17.38648 -17.14298 -16.70721 -16.51633 -16.22935 -15.98292 -15.62116 -15.55405 -15.25455 -15.15694 -14.90999 -14.53543 -14.32472 -14.09297 -13.85251 -13.72666 -13.64928 -13.47454 -13.37439 -13.13542 -12.93658 -12.81571 -12.66301 -12.51752 -12.44495 -12.40647 -12.22138 -11.93053 -11.89555 -11.75907 -11.48463 -11.27514 -11.15132 -11.13764 -10.85242 -10.64050 -10.29810 -10.09894 -10.08287 -9.62215 -8.23606 -6.42378 1.43832 1.45997 1.56820 1.68193 2.12288 2.38734 2.61703 2.96851 3.28582 3.67941 3.79037 3.82600 3.93625 4.02344 4.03604 4.08267 4.14844 4.23921 4.27942 4.30002 4.31529 4.39327 4.44474 4.45860 4.51897 4.55380 4.56942 4.57876 4.65286 4.76919 4.86741 4.90796 4.93326 5.00157 5.07573 5.15574 5.16148 5.18773 5.29496 5.32511 5.36699 5.39165 5.42371 5.42840 5.46339 5.54970 5.75968 5.96018 6.23249 6.31530 6.61719 6.65018 7.31000 7.33262 7.56055 8.82074 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020512 B = 0.001848 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.739683 B =15146.819276 C =15740.478660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 H 0.063 0.937 4 C -0.109 4.109 5 C -0.123 4.123 6 C -0.115 4.115 7 C -0.141 4.141 8 C 0.095 3.905 9 H 0.068 0.932 10 O -0.394 6.394 11 C 0.060 3.940 12 C 0.123 3.877 13 N -0.714 5.714 14 C 0.514 3.486 15 O -0.573 6.573 16 C -0.003 4.003 17 N -0.470 5.470 18 C -0.006 4.006 19 C 0.216 3.784 20 O -0.586 6.586 21 C -0.552 4.552 22 H 0.075 0.925 23 C 0.020 3.980 24 N -0.924 5.924 25 Si 0.975 3.025 26 H -0.272 1.272 27 H -0.284 1.284 28 H -0.265 1.265 29 C 0.017 3.983 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.056 0.944 44 H 0.077 0.923 45 H 0.415 0.585 46 H 0.124 0.876 47 H 0.091 0.909 48 H 0.068 0.932 49 H 0.033 0.967 50 H 0.383 0.617 51 H 0.274 0.726 52 H 0.072 0.928 53 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.447 -14.630 28.202 31.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 H 0.082 0.918 4 C -0.146 4.146 5 C -0.160 4.160 6 C -0.153 4.153 7 C -0.179 4.179 8 C 0.037 3.963 9 H 0.086 0.914 10 O -0.314 6.314 11 C -0.017 4.017 12 C -0.001 4.001 13 N -0.368 5.368 14 C 0.300 3.700 15 O -0.451 6.451 16 C -0.135 4.135 17 N -0.193 5.193 18 C -0.135 4.135 19 C 0.175 3.825 20 O -0.398 6.398 21 C -0.590 4.590 22 H 0.093 0.907 23 C -0.179 4.179 24 N -0.565 5.565 25 Si 0.799 3.201 26 H -0.197 1.197 27 H -0.209 1.209 28 H -0.189 1.189 29 C -0.112 4.112 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.095 0.905 45 H 0.251 0.749 46 H 0.142 0.858 47 H 0.108 0.892 48 H 0.087 0.913 49 H 0.052 0.948 50 H 0.237 0.763 51 H 0.083 0.917 52 H 0.091 0.909 53 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.768 -14.181 28.406 31.798 hybrid contribution 1.530 -0.564 -1.360 2.124 sum 3.298 -14.745 27.046 30.980 Atomic orbital electron populations 1.21747 0.94881 1.01873 1.01581 1.21196 0.95999 0.99807 0.93624 0.91800 1.21564 0.95676 1.00852 0.96529 1.21581 0.95379 1.00874 0.98190 1.21488 1.00804 0.99374 0.93608 1.22038 0.95327 1.01520 0.99002 1.22234 0.93408 0.95912 0.84720 0.91371 1.87953 1.86796 1.36072 1.20532 1.22748 1.01417 0.92460 0.85048 1.21370 0.91259 0.91604 0.95871 1.45765 1.20031 1.37735 1.33279 1.20855 0.88342 0.81158 0.79615 1.90687 1.28445 1.70194 1.55744 1.22715 0.95701 0.97104 0.97936 1.68727 1.43095 1.06449 1.00995 1.24527 0.97085 1.00580 0.91330 1.19785 0.84863 0.87955 0.89907 1.86020 1.50536 1.72381 1.30864 1.21853 0.95089 1.47941 0.94146 0.90731 1.25944 1.00023 0.92971 0.98976 1.69411 1.27441 1.47345 1.12323 0.85305 0.78748 0.78690 0.77356 1.19744 1.20919 1.18878 1.24044 0.95889 0.95584 0.95666 0.92342 0.92279 0.93537 0.91012 0.91235 0.92325 0.90876 0.91238 0.91360 0.91461 0.91981 0.90031 0.91046 0.92605 0.90485 0.74858 0.85814 0.89157 0.91350 0.94785 0.76265 0.91665 0.90935 0.88843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.05 71.98 0.65 -1.23 16 2 C -0.09 -1.09 2.46 -10.79 -0.03 -1.12 16 3 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 4 C -0.11 -0.97 5.20 30.59 0.16 -0.81 16 5 C -0.12 -1.03 5.92 30.60 0.18 -0.85 16 6 C -0.12 -0.98 5.92 30.60 0.18 -0.80 16 7 C -0.14 -1.56 5.54 30.59 0.17 -1.39 16 8 C 0.09 1.18 2.04 30.60 0.06 1.24 16 9 H 0.07 0.72 7.79 -2.38 -0.02 0.71 16 10 O -0.39 -6.54 9.26 -148.98 -1.38 -7.92 16 11 C 0.06 0.84 5.88 71.98 0.42 1.26 16 12 C 0.12 2.63 6.06 86.38 0.52 3.15 16 13 N -0.71 -17.08 5.50 -463.07 -2.55 -19.63 16 14 C 0.51 17.64 7.90 87.66 0.69 18.33 16 15 O -0.57 -26.07 16.43 -3.04 -0.05 -26.12 16 16 C 0.00 -0.10 5.30 85.56 0.45 0.36 16 17 N -0.47 -20.88 5.82 -932.87 -5.43 -26.31 16 18 C -0.01 -0.28 7.13 83.57 0.60 0.32 16 19 C 0.22 11.41 1.57 -11.20 -0.02 11.39 16 20 O -0.59 -34.42 13.54 -148.98 -2.02 -36.43 16 21 C -0.55 -29.46 8.68 25.60 0.22 -29.23 16 22 H 0.07 3.75 7.81 -2.91 -0.02 3.73 16 23 C 0.02 1.06 5.39 84.65 0.46 1.52 16 24 N -0.92 -51.55 11.02 21.45 0.24 -51.31 16 25 Si 0.97 41.50 29.54 68.60 2.03 43.53 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 28 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 29 C 0.02 0.72 7.09 83.57 0.59 1.32 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.05 0.78 7.68 -2.39 -0.02 0.77 16 33 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.07 0.70 7.87 -2.39 -0.02 0.68 16 40 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.08 0.88 8.08 -2.39 -0.02 0.86 16 42 H 0.07 0.79 7.87 -2.38 -0.02 0.77 16 43 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 44 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.41 7.38 8.47 -92.71 -0.79 6.60 16 46 H 0.12 3.25 8.08 -2.39 -0.02 3.24 16 47 H 0.09 2.57 7.30 -2.39 -0.02 2.55 16 48 H 0.07 3.14 7.37 -2.38 -0.02 3.13 16 49 H 0.03 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.38 22.97 6.33 -74.06 -0.47 22.50 16 51 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 52 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 53 H 0.09 3.46 7.87 -2.39 -0.02 3.44 16 Total: -1.00 -71.58 418.40 -4.21 -75.79 By element: Atomic # 1 Polarization: 45.32 SS G_CDS: -0.37 Total: 44.96 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 5.32 Total: 3.44 kcal Atomic # 7 Polarization: -89.51 SS G_CDS: -7.74 Total: -97.25 kcal Atomic # 8 Polarization: -67.02 SS G_CDS: -3.45 Total: -70.47 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -71.58 -4.21 -75.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653391116.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.323 kcal (2) G-P(sol) polarization free energy of solvation -71.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds