Wall clock time and date at job start Tue Mar 31 2020 23:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47143 * 60.00181 * 5 4 2 7 7 C 1.53000 * 109.46911 * 299.99808 * 6 5 4 8 8 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 9 9 H 1.09001 * 109.47362 * 300.00732 * 8 2 1 10 10 O 1.42905 * 109.46728 * 59.99947 * 8 2 1 11 11 C 1.42903 * 113.99741 * 210.00125 * 10 8 2 12 12 C 1.53005 * 109.46623 * 180.02562 * 11 10 8 13 13 N 1.46496 * 109.47590 * 65.00151 * 12 11 10 14 14 C 1.34773 * 120.00217 * 179.97438 * 13 12 11 15 15 O 1.21278 * 119.99928 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99823 * 180.02562 * 14 13 12 17 17 N 1.46900 * 109.46951 * 180.02562 * 16 14 13 18 18 C 1.47477 * 111.00300 * 74.02753 * 17 16 14 19 19 C 1.53517 * 87.93532 * 138.70593 * 18 17 16 20 20 O 1.42896 * 114.34493 * 87.63382 * 19 18 17 21 21 C 1.50697 * 114.16684 * 220.33138 * 19 18 17 22 22 H 1.07999 * 120.00077 * 93.84122 * 21 19 18 23 23 C 1.37881 * 119.99845 * 273.83353 * 21 19 18 24 24 N 1.31515 * 120.00254 * 0.02562 * 23 21 19 25 25 Si 1.86805 * 119.99830 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47046 * 60.00432 * 25 23 21 27 27 H 1.48503 * 109.46949 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47394 * 300.00058 * 25 23 21 29 29 C 1.47479 * 111.00347 * 169.99691 * 17 16 14 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 1.09002 * 109.47103 * 300.00247 * 4 2 1 34 34 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 35 35 H 1.09004 * 109.47261 * 180.02562 * 5 4 2 36 36 H 1.09002 * 109.47153 * 300.00216 * 5 4 2 37 37 H 1.08992 * 109.47060 * 59.99979 * 6 5 4 38 38 H 1.09004 * 109.47059 * 180.02562 * 6 5 4 39 39 H 1.09001 * 109.47194 * 179.97438 * 7 6 5 40 40 H 1.09002 * 109.47131 * 300.00452 * 7 6 5 41 41 H 1.08999 * 109.47407 * 299.99742 * 11 10 8 42 42 H 1.08993 * 109.47596 * 60.00351 * 11 10 8 43 43 H 1.09004 * 109.46822 * 184.99901 * 12 11 10 44 44 H 1.08998 * 109.47268 * 304.99363 * 12 11 10 45 45 H 0.97008 * 119.99562 * 359.97438 * 13 12 11 46 46 H 1.09000 * 109.47277 * 299.99252 * 16 14 13 47 47 H 1.08991 * 109.47422 * 60.00161 * 16 14 13 48 48 H 1.09006 * 113.47476 * 253.47191 * 18 17 16 49 49 H 1.09001 * 113.48013 * 23.93620 * 18 17 16 50 50 H 0.96701 * 113.99827 * 86.07713 * 20 19 18 51 51 H 0.96995 * 120.00225 * 179.97438 * 24 23 21 52 52 H 1.09005 * 113.47523 * 336.06405 * 29 17 16 53 53 H 1.09002 * 113.47909 * 106.52288 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5700 -0.7207 -1.2494 6 6 4.0806 -1.4416 -0.0002 7 6 3.5706 -0.7202 1.2490 8 6 2.0400 -0.7212 1.2493 9 1 1.6766 -0.2074 2.1393 10 8 1.5636 -2.0685 1.2493 11 6 1.3699 -2.6164 2.5548 12 6 0.8620 -4.0546 2.4339 13 7 1.8957 -4.8871 1.8138 14 6 1.6693 -6.1993 1.6059 15 8 0.6099 -6.6911 1.9327 16 6 2.7329 -7.0557 0.9684 17 7 2.2452 -8.4365 0.8523 18 6 1.2465 -8.5555 -0.2263 19 6 1.9124 -9.8812 -0.6210 20 8 1.4083 -11.0234 0.0740 21 6 2.0301 -10.0936 -2.1083 22 1 2.9345 -9.8078 -2.6247 23 6 0.9831 -10.6531 -2.8098 24 7 -0.1184 -11.0009 -2.1810 25 14 1.1293 -10.9171 -4.6533 26 1 2.2733 -11.8211 -4.9347 27 1 -0.1230 -11.5282 -5.1666 28 1 1.3535 -9.6114 -5.3241 29 6 3.1543 -9.2504 0.0240 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.6767 -1.7489 -1.2491 34 1 1.6768 -0.2074 -2.1391 35 1 3.9334 -1.2342 -2.1397 36 1 3.9330 0.3071 -1.2497 37 1 3.7176 -2.4693 0.0000 38 1 5.1706 -1.4408 -0.0002 39 1 3.9339 -1.2340 2.1390 40 1 3.9335 0.3076 1.2487 41 1 2.3162 -2.6099 3.0957 42 1 0.6380 -2.0166 3.0957 43 1 0.6299 -4.4425 3.4258 44 1 -0.0368 -4.0720 1.8176 45 1 2.7432 -4.4938 1.5527 46 1 2.9651 -6.6683 -0.0236 47 1 3.6314 -7.0381 1.5850 48 1 0.2259 -8.6737 0.1380 49 1 1.3357 -7.7810 -0.9881 50 1 0.6260 -11.4188 -0.3344 51 1 -0.8550 -11.3941 -2.6745 52 1 3.7528 -8.6613 -0.6710 53 1 3.7509 -9.9575 0.6003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653391117.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:49 Heat of formation + Delta-G solvation = -137.535150 kcal Electronic energy + Delta-G solvation = -30861.458590 eV Core-core repulsion = 26732.532359 eV Total energy + Delta-G solvation = -4128.926230 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.40519 -40.57404 -39.92727 -37.46438 -36.20203 -35.46564 -34.09692 -33.45960 -31.90466 -30.98069 -29.82418 -27.89321 -27.02396 -26.67733 -24.82021 -23.52592 -23.17330 -22.12887 -21.51006 -20.52548 -20.51659 -19.29713 -18.15555 -17.51587 -17.35502 -17.06913 -16.70310 -16.57313 -16.46996 -16.14914 -15.63408 -15.54930 -15.33480 -15.07616 -14.67547 -14.58418 -14.19967 -13.92847 -13.87983 -13.83333 -13.62456 -13.51057 -13.35515 -12.96824 -12.90071 -12.83244 -12.63173 -12.55172 -12.44294 -12.38116 -12.23080 -12.17716 -11.98473 -11.72841 -11.34590 -11.33137 -11.16120 -10.82042 -10.81387 -10.63939 -10.26783 -10.11230 -10.08553 -9.65194 -8.24224 -6.43225 1.43546 1.45226 1.53847 1.66067 2.12610 2.37942 2.71117 2.95841 3.27217 3.72216 3.80072 3.84632 3.90589 4.01515 4.03604 4.10715 4.18628 4.26201 4.30016 4.32611 4.38616 4.43469 4.46030 4.49029 4.57511 4.58101 4.61019 4.62898 4.67372 4.81219 4.86826 4.92053 4.94907 4.99616 5.09292 5.13123 5.17479 5.23838 5.34436 5.36334 5.37280 5.40401 5.43917 5.46790 5.47247 5.64225 5.75201 5.95131 6.21761 6.37224 6.60065 6.63726 7.30063 7.31236 7.54815 8.81220 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012517 B = 0.002508 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.412376 B =11160.045730 C =12149.867896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 H 0.093 0.907 4 C -0.111 4.111 5 C -0.118 4.118 6 C -0.115 4.115 7 C -0.137 4.137 8 C 0.092 3.908 9 H 0.073 0.927 10 O -0.387 6.387 11 C 0.059 3.941 12 C 0.123 3.877 13 N -0.711 5.711 14 C 0.512 3.488 15 O -0.573 6.573 16 C -0.002 4.002 17 N -0.467 5.467 18 C 0.003 3.997 19 C 0.216 3.784 20 O -0.584 6.584 21 C -0.556 4.556 22 H 0.074 0.926 23 C 0.021 3.979 24 N -0.924 5.924 25 Si 0.974 3.026 26 H -0.267 1.267 27 H -0.283 1.283 28 H -0.268 1.268 29 C 0.018 3.982 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.049 0.951 45 H 0.415 0.585 46 H 0.082 0.918 47 H 0.131 0.869 48 H 0.032 0.968 49 H 0.054 0.946 50 H 0.383 0.617 51 H 0.274 0.726 52 H 0.091 0.909 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.647 27.821 6.132 29.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.103 4.103 3 H 0.111 0.889 4 C -0.149 4.149 5 C -0.155 4.155 6 C -0.153 4.153 7 C -0.175 4.175 8 C 0.034 3.966 9 H 0.091 0.909 10 O -0.307 6.307 11 C -0.017 4.017 12 C -0.001 4.001 13 N -0.365 5.365 14 C 0.298 3.702 15 O -0.451 6.451 16 C -0.134 4.134 17 N -0.190 5.190 18 C -0.127 4.127 19 C 0.175 3.825 20 O -0.396 6.396 21 C -0.594 4.594 22 H 0.092 0.908 23 C -0.179 4.179 24 N -0.565 5.565 25 Si 0.798 3.202 26 H -0.192 1.192 27 H -0.209 1.209 28 H -0.193 1.193 29 C -0.111 4.111 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.067 0.933 45 H 0.251 0.749 46 H 0.100 0.900 47 H 0.149 0.851 48 H 0.050 0.950 49 H 0.072 0.928 50 H 0.237 0.763 51 H 0.083 0.917 52 H 0.109 0.891 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.007 27.272 7.292 29.344 hybrid contribution -0.429 0.065 -1.883 1.933 sum 7.578 27.337 5.408 28.879 Atomic orbital electron populations 1.21758 0.95208 1.01430 1.01814 1.21250 0.95742 0.99231 0.94066 0.88875 1.21487 0.95900 1.00228 0.97291 1.21517 0.95148 1.00928 0.97938 1.21413 1.00012 0.99497 0.94346 1.22031 0.95138 1.01869 0.98456 1.22236 0.93599 0.82454 0.98285 0.90932 1.87990 1.86724 1.28688 1.27302 1.22745 1.01435 0.91790 0.85775 1.21371 0.91046 0.89335 0.98306 1.45739 1.20031 1.07589 1.63162 1.20824 0.88229 0.82943 0.78167 1.90706 1.28372 1.73980 1.52071 1.22729 0.97865 0.90656 1.02111 1.68809 1.07360 1.07814 1.34975 1.24309 0.96341 1.00862 0.91160 1.19795 0.90526 0.82622 0.89549 1.86003 1.51028 1.46159 1.56422 1.21850 1.02182 1.42426 0.92979 0.90799 1.25946 0.94179 0.93718 1.04029 1.69406 1.05898 1.42736 1.38440 0.85375 0.77638 0.78737 0.78474 1.19187 1.20853 1.19261 1.24042 0.96048 0.96189 0.94809 0.93821 0.92597 0.92094 0.93484 0.92309 0.92700 0.91207 0.92729 0.91645 0.91229 0.89971 0.90801 0.90112 0.90232 0.93257 0.74866 0.89995 0.85087 0.94975 0.92750 0.76291 0.91657 0.89147 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.05 71.98 0.65 -1.38 16 2 C -0.08 -1.07 2.55 -10.80 -0.03 -1.09 16 3 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 4 C -0.11 -1.74 5.06 30.59 0.15 -1.59 16 5 C -0.12 -1.59 5.92 30.59 0.18 -1.40 16 6 C -0.12 -1.48 5.78 30.60 0.18 -1.30 16 7 C -0.14 -1.37 5.63 30.61 0.17 -1.20 16 8 C 0.09 1.08 2.35 30.61 0.07 1.15 16 9 H 0.07 0.66 7.79 -2.39 -0.02 0.64 16 10 O -0.39 -6.28 7.91 -148.98 -1.18 -7.46 16 11 C 0.06 0.80 5.88 71.98 0.42 1.22 16 12 C 0.12 2.64 6.06 86.38 0.52 3.16 16 13 N -0.71 -16.97 5.50 -463.07 -2.55 -19.52 16 14 C 0.51 17.63 7.67 87.66 0.67 18.30 16 15 O -0.57 -26.19 15.76 -3.02 -0.05 -26.24 16 16 C 0.00 -0.07 5.31 85.56 0.45 0.38 16 17 N -0.47 -20.73 6.06 -932.95 -5.66 -26.39 16 18 C 0.00 0.16 6.14 83.57 0.51 0.67 16 19 C 0.22 11.60 1.57 -11.20 -0.02 11.58 16 20 O -0.58 -34.41 13.54 -148.98 -2.02 -36.43 16 21 C -0.56 -30.35 8.68 25.60 0.22 -30.13 16 22 H 0.07 3.80 7.81 -2.91 -0.02 3.77 16 23 C 0.02 1.12 5.39 84.66 0.46 1.57 16 24 N -0.92 -52.59 11.02 21.45 0.24 -52.36 16 25 Si 0.97 42.38 29.54 68.60 2.03 44.40 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 27 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 28 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 29 C 0.02 0.76 7.12 83.56 0.60 1.36 16 30 H 0.04 0.81 7.68 -2.39 -0.02 0.79 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.05 0.98 7.68 -2.39 -0.02 0.97 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.05 0.88 7.68 -2.39 -0.02 0.86 16 38 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.07 0.62 7.88 -2.39 -0.02 0.60 16 40 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.07 0.73 7.87 -2.39 -0.02 0.71 16 42 H 0.08 0.83 8.08 -2.39 -0.02 0.81 16 43 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 44 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.41 7.34 8.47 -92.70 -0.79 6.56 16 46 H 0.08 2.42 7.56 -2.39 -0.02 2.40 16 47 H 0.13 3.29 8.14 -2.39 -0.02 3.27 16 48 H 0.03 1.88 8.14 -2.38 -0.02 1.86 16 49 H 0.05 2.72 7.66 -2.39 -0.02 2.70 16 50 H 0.38 23.15 6.33 -74.06 -0.47 22.68 16 51 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 52 H 0.09 3.41 7.72 -2.38 -0.02 3.39 16 53 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -72.60 415.20 -4.33 -76.92 By element: Atomic # 1 Polarization: 46.12 SS G_CDS: -0.36 Total: 45.75 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 5.22 Total: 1.30 kcal Atomic # 7 Polarization: -90.29 SS G_CDS: -7.97 Total: -98.26 kcal Atomic # 8 Polarization: -66.88 SS G_CDS: -3.24 Total: -70.13 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -72.60 -4.33 -76.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653391117.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.610 kcal (2) G-P(sol) polarization free energy of solvation -72.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds