Wall clock time and date at job start Tue Mar 31 2020 23:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47085 * 2 1 4 4 C 1.53004 * 109.46898 * 120.00265 * 2 1 3 5 5 C 1.53006 * 109.46523 * 179.97438 * 4 2 1 6 6 C 1.52995 * 109.47164 * 299.99880 * 5 4 2 7 7 C 1.53000 * 109.47456 * 60.00272 * 6 5 4 8 8 C 1.52994 * 109.46985 * 300.00108 * 7 6 5 9 9 H 1.08996 * 109.47609 * 179.97438 * 8 7 6 10 10 O 1.42901 * 109.47006 * 299.99937 * 8 7 6 11 11 C 1.42902 * 113.99893 * 270.00026 * 10 8 7 12 12 C 1.52996 * 109.47084 * 180.02562 * 11 10 8 13 13 N 1.46500 * 109.47368 * 65.00015 * 12 11 10 14 14 C 1.34777 * 119.99746 * 179.97438 * 13 12 11 15 15 O 1.21282 * 120.00345 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99614 * 179.97438 * 14 13 12 17 17 N 1.46906 * 109.47140 * 180.02562 * 16 14 13 18 18 C 1.47475 * 111.00131 * 265.97033 * 17 16 14 19 19 C 1.53504 * 87.93491 * 221.29680 * 18 17 16 20 20 O 1.42905 * 114.17291 * 272.37836 * 19 18 17 21 21 C 1.50700 * 114.34665 * 139.68331 * 19 18 17 22 22 H 1.07999 * 120.00507 * 266.07651 * 21 19 18 23 23 C 1.37878 * 119.99860 * 86.07889 * 21 19 18 24 24 N 1.31516 * 119.99832 * 359.97438 * 23 21 19 25 25 Si 1.86805 * 119.99930 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47068 * 59.99578 * 25 23 21 27 27 H 1.48496 * 109.46718 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.46957 * 299.99579 * 25 23 21 29 29 C 1.47480 * 111.00036 * 170.00054 * 17 16 14 30 30 H 1.08993 * 109.47564 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46925 * 299.99979 * 1 2 3 32 32 H 1.09000 * 109.47446 * 59.99479 * 1 2 3 33 33 H 1.08992 * 109.46938 * 299.99525 * 4 2 1 34 34 H 1.08994 * 109.46947 * 60.00023 * 4 2 1 35 35 H 1.09003 * 109.46985 * 59.99979 * 5 4 2 36 36 H 1.08999 * 109.46622 * 179.97438 * 5 4 2 37 37 H 1.09000 * 109.46772 * 180.02562 * 6 5 4 38 38 H 1.09003 * 109.47250 * 299.99936 * 6 5 4 39 39 H 1.08992 * 109.47092 * 179.97438 * 7 6 5 40 40 H 1.09004 * 109.46643 * 59.99559 * 7 6 5 41 41 H 1.08997 * 109.47231 * 59.99894 * 11 10 8 42 42 H 1.09000 * 109.47256 * 300.00175 * 11 10 8 43 43 H 1.08996 * 109.47261 * 304.99688 * 12 11 10 44 44 H 1.09004 * 109.47368 * 185.00072 * 12 11 10 45 45 H 0.96996 * 119.99985 * 0.02562 * 13 12 11 46 46 H 1.09004 * 109.47103 * 60.00237 * 16 14 13 47 47 H 1.09000 * 109.47247 * 300.00115 * 16 14 13 48 48 H 1.09004 * 113.47782 * 336.06627 * 18 17 16 49 49 H 1.08999 * 113.47610 * 106.52847 * 18 17 16 50 50 H 0.96698 * 113.99785 * 273.84310 * 20 19 18 51 51 H 0.97003 * 119.99202 * 180.02562 * 24 23 21 52 52 H 1.09004 * 113.47785 * 253.47126 * 29 17 16 53 53 H 1.08999 * 113.47696 * 23.93405 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5700 -0.7218 1.2488 6 6 4.0794 -1.4434 -0.0004 7 6 3.5695 -0.7221 -1.2496 8 6 2.0395 -0.7216 -1.2493 9 1 1.6761 -0.2074 -2.1390 10 8 1.5627 -2.0687 -1.2490 11 6 1.3685 -2.6168 -2.5543 12 6 0.8590 -4.0543 -2.4332 13 7 -0.4681 -4.0515 -1.8127 14 6 -1.1171 -5.2142 -1.6045 15 8 -0.6023 -6.2629 -1.9305 16 6 -2.4820 -5.2113 -0.9657 17 7 -2.9712 -6.5917 -0.8495 18 6 -3.8092 -6.9546 -2.0075 19 6 -4.7587 -7.6598 -1.0289 20 8 -4.4140 -9.0196 -0.7564 21 6 -6.2216 -7.4666 -1.3346 22 1 -6.7730 -6.6711 -0.8556 23 6 -6.8563 -8.3056 -2.2258 24 7 -6.1848 -9.2741 -2.8095 25 14 -8.6696 -8.0658 -2.6053 26 1 -8.8810 -6.7109 -3.1751 27 1 -9.1094 -9.0894 -3.5871 28 1 -9.4596 -8.2061 -1.3557 29 6 -4.1891 -6.6527 -0.0200 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.6767 -0.2075 2.1392 34 1 1.6766 -1.7489 1.2492 35 1 3.9337 0.3057 1.2486 36 1 3.9333 -1.2353 2.1390 37 1 5.1695 -1.4441 -0.0004 38 1 3.7158 -2.4710 -0.0002 39 1 3.9328 -1.2360 -2.1395 40 1 3.9332 0.3054 -1.2498 41 1 2.3146 -2.6106 -3.0955 42 1 0.6367 -2.0167 -3.0952 43 1 1.5470 -4.6330 -1.8169 44 1 0.7954 -4.5021 -3.4250 45 1 -0.8799 -3.2128 -1.5523 46 1 -3.1702 -4.6322 -1.5815 47 1 -2.4179 -4.7643 0.0263 48 1 -4.2583 -6.0950 -2.5050 49 1 -3.3180 -7.6355 -2.7026 50 1 -4.7740 -9.6518 -1.3934 51 1 -6.6313 -9.8641 -3.4368 52 1 -4.0198 -7.0777 0.9694 53 1 -4.7395 -5.7125 0.0130 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653391118.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:52 Heat of formation + Delta-G solvation = -136.986561 kcal Electronic energy + Delta-G solvation = -30454.509319 eV Core-core repulsion = 26325.606877 eV Total energy + Delta-G solvation = -4128.902442 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.32485 -40.57579 -39.96366 -37.46168 -36.20858 -35.43775 -34.09034 -33.46200 -31.88876 -30.97453 -29.81963 -27.88843 -27.00135 -26.69205 -24.81271 -23.48408 -23.21676 -22.11491 -21.50525 -20.53458 -20.50767 -19.28609 -18.09772 -17.61443 -17.20632 -17.11448 -16.71815 -16.47646 -16.44949 -16.26465 -15.67790 -15.54606 -15.30009 -14.92697 -14.86185 -14.35709 -14.18136 -14.06065 -13.88532 -13.83834 -13.64105 -13.41194 -13.36358 -13.04867 -12.91236 -12.78813 -12.64602 -12.48895 -12.46017 -12.34905 -12.21292 -12.15424 -11.90410 -11.71422 -11.37557 -11.28904 -11.15392 -10.86171 -10.80733 -10.62923 -10.27386 -10.09687 -10.07703 -9.61950 -8.23369 -6.42325 1.44981 1.46957 1.55390 1.69105 2.13402 2.39019 2.70609 2.96972 3.28848 3.72909 3.82368 3.85672 3.91482 4.02685 4.03861 4.08614 4.19032 4.28082 4.28505 4.30449 4.39491 4.43129 4.44861 4.47985 4.57654 4.58397 4.61635 4.63745 4.67266 4.84073 4.87758 4.90894 4.96418 5.00794 5.10836 5.14195 5.15715 5.24743 5.33093 5.36738 5.38075 5.43006 5.44783 5.46756 5.50022 5.64975 5.75990 5.96272 6.23678 6.36409 6.62984 6.65016 7.31107 7.34476 7.56103 8.82098 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021446 B = 0.001977 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.320510 B =14159.886980 C =14440.505293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 H 0.091 0.909 4 C -0.110 4.110 5 C -0.118 4.118 6 C -0.115 4.115 7 C -0.139 4.139 8 C 0.092 3.908 9 H 0.073 0.927 10 O -0.385 6.385 11 C 0.059 3.941 12 C 0.124 3.876 13 N -0.712 5.712 14 C 0.514 3.486 15 O -0.573 6.573 16 C -0.003 4.003 17 N -0.470 5.470 18 C -0.006 4.006 19 C 0.217 3.783 20 O -0.587 6.587 21 C -0.553 4.553 22 H 0.075 0.925 23 C 0.020 3.980 24 N -0.924 5.924 25 Si 0.974 3.026 26 H -0.265 1.265 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.016 3.984 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.054 0.946 44 H 0.075 0.925 45 H 0.415 0.585 46 H 0.090 0.910 47 H 0.124 0.876 48 H 0.068 0.932 49 H 0.033 0.967 50 H 0.383 0.617 51 H 0.274 0.726 52 H 0.072 0.928 53 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.825 25.610 2.111 30.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.103 4.103 3 H 0.109 0.891 4 C -0.148 4.148 5 C -0.155 4.155 6 C -0.152 4.152 7 C -0.177 4.177 8 C 0.034 3.966 9 H 0.091 0.909 10 O -0.304 6.304 11 C -0.017 4.017 12 C 0.000 4.000 13 N -0.367 5.367 14 C 0.300 3.700 15 O -0.451 6.451 16 C -0.134 4.134 17 N -0.192 5.192 18 C -0.136 4.136 19 C 0.176 3.824 20 O -0.399 6.399 21 C -0.591 4.591 22 H 0.093 0.907 23 C -0.179 4.179 24 N -0.565 5.565 25 Si 0.799 3.201 26 H -0.190 1.190 27 H -0.210 1.210 28 H -0.195 1.195 29 C -0.112 4.112 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.251 0.749 46 H 0.108 0.892 47 H 0.142 0.858 48 H 0.086 0.914 49 H 0.052 0.948 50 H 0.237 0.763 51 H 0.083 0.917 52 H 0.090 0.910 53 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 18.102 24.519 2.591 30.587 hybrid contribution -1.618 0.209 -1.159 2.001 sum 16.483 24.728 1.432 29.753 Atomic orbital electron populations 1.21776 0.94689 1.01956 1.01899 1.21249 0.96185 0.99045 0.93794 0.89093 1.21483 0.95511 1.00398 0.97385 1.21519 0.95580 1.00813 0.97596 1.21394 0.99813 0.99298 0.94722 1.22025 0.95666 1.01736 0.98267 1.22224 0.93275 0.82503 0.98571 0.90924 1.87976 1.86628 1.28696 1.27146 1.22723 1.01021 0.92160 0.85835 1.21346 0.83453 0.96974 0.98219 1.45753 1.19073 1.08611 1.63240 1.20848 0.87596 0.83516 0.78015 1.90688 1.69071 1.33365 1.52008 1.22714 0.94060 0.93305 1.03356 1.68725 1.22992 1.19784 1.07724 1.24531 0.94450 0.99661 0.94959 1.19774 0.91222 0.80319 0.91075 1.86022 1.78482 1.18349 1.57025 1.21826 0.95375 1.16204 1.25737 0.90700 1.25947 1.03352 0.94177 0.94410 1.69411 1.38489 1.18931 1.29693 0.85362 0.78575 0.78177 0.78019 1.19010 1.20984 1.19456 1.24047 0.89799 0.99167 0.98196 0.92939 0.92516 0.92164 0.91964 0.93203 0.91209 0.92586 0.91993 0.93304 0.91750 0.89912 0.90357 0.90939 0.92800 0.90699 0.74864 0.89188 0.85834 0.91352 0.94792 0.76269 0.91658 0.90960 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.05 71.98 0.65 -1.00 16 2 C -0.08 -0.93 2.55 -10.79 -0.03 -0.96 16 3 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 4 C -0.11 -1.50 5.06 30.60 0.15 -1.35 16 5 C -0.12 -1.46 5.92 30.59 0.18 -1.28 16 6 C -0.11 -1.52 5.78 30.59 0.18 -1.35 16 7 C -0.14 -1.46 5.63 30.59 0.17 -1.29 16 8 C 0.09 1.03 2.35 30.59 0.07 1.10 16 9 H 0.07 0.63 7.79 -2.39 -0.02 0.61 16 10 O -0.38 -5.89 7.91 -148.98 -1.18 -7.07 16 11 C 0.06 0.79 5.88 71.98 0.42 1.22 16 12 C 0.12 2.61 6.06 86.38 0.52 3.14 16 13 N -0.71 -16.74 5.50 -463.06 -2.55 -19.28 16 14 C 0.51 17.52 7.90 87.66 0.69 18.21 16 15 O -0.57 -26.04 16.43 -3.04 -0.05 -26.09 16 16 C 0.00 -0.09 5.30 85.56 0.45 0.36 16 17 N -0.47 -20.81 5.82 -932.94 -5.43 -26.24 16 18 C -0.01 -0.31 7.13 83.57 0.60 0.28 16 19 C 0.22 11.45 1.56 -11.20 -0.02 11.44 16 20 O -0.59 -34.48 13.53 -148.98 -2.02 -36.50 16 21 C -0.55 -29.48 8.69 25.60 0.22 -29.26 16 22 H 0.07 3.75 7.81 -2.91 -0.02 3.73 16 23 C 0.02 1.08 5.39 84.65 0.46 1.54 16 24 N -0.92 -51.57 11.02 21.45 0.24 -51.33 16 25 Si 0.97 41.42 29.54 68.60 2.03 43.45 16 26 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 27 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 28 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 29 C 0.02 0.71 7.09 83.57 0.59 1.30 16 30 H 0.05 0.73 7.68 -2.39 -0.02 0.71 16 31 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.05 0.92 7.68 -2.39 -0.02 0.90 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.05 0.87 7.68 -2.39 -0.02 0.85 16 39 H 0.06 0.66 7.87 -2.39 -0.02 0.64 16 40 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 41 H 0.08 0.83 7.87 -2.39 -0.02 0.81 16 42 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16 43 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.41 7.15 8.47 -92.71 -0.79 6.37 16 46 H 0.09 2.55 7.30 -2.38 -0.02 2.53 16 47 H 0.12 3.22 8.08 -2.39 -0.02 3.21 16 48 H 0.07 3.14 7.38 -2.38 -0.02 3.12 16 49 H 0.03 1.89 8.14 -2.39 -0.02 1.87 16 50 H 0.38 22.98 6.33 -74.06 -0.47 22.51 16 51 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 52 H 0.07 3.13 8.14 -2.38 -0.02 3.11 16 53 H 0.09 3.45 7.87 -2.39 -0.02 3.44 16 Total: -1.00 -71.58 416.34 -4.00 -75.58 By element: Atomic # 1 Polarization: 45.74 SS G_CDS: -0.36 Total: 45.37 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: 5.32 Total: 2.11 kcal Atomic # 7 Polarization: -89.11 SS G_CDS: -7.74 Total: -96.85 kcal Atomic # 8 Polarization: -66.41 SS G_CDS: -3.24 Total: -69.65 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -71.58 -4.00 -75.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653391118.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.406 kcal (2) G-P(sol) polarization free energy of solvation -71.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds