Wall clock time and date at job start Tue Mar 31 2020 23:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47005 * 2 1 4 4 C 1.53000 * 109.47377 * 239.99427 * 2 1 3 5 5 C 1.52996 * 109.47125 * 179.97438 * 4 2 1 6 6 C 1.52995 * 109.46935 * 60.00581 * 5 4 2 7 7 C 1.53004 * 109.47219 * 299.99451 * 6 5 4 8 8 C 1.53003 * 109.46898 * 119.99669 * 2 1 3 9 9 H 1.08992 * 109.47085 * 60.00205 * 8 2 1 10 10 O 1.42898 * 109.46793 * 299.99826 * 8 2 1 11 11 C 1.42905 * 113.99670 * 150.00656 * 10 8 2 12 12 C 1.53002 * 109.47169 * 180.02562 * 11 10 8 13 13 N 1.46497 * 109.47006 * 64.99422 * 12 11 10 14 14 C 1.34781 * 119.99773 * 180.02562 * 13 12 11 15 15 O 1.21283 * 119.99633 * 359.97438 * 14 13 12 16 16 C 1.50695 * 120.00054 * 180.02562 * 14 13 12 17 17 N 1.46896 * 109.47205 * 180.02562 * 16 14 13 18 18 C 1.47962 * 111.00206 * 189.99755 * 17 16 14 19 19 C 1.53933 * 86.18036 * 137.57868 * 18 17 16 20 20 O 1.42903 * 113.73455 * 90.64263 * 19 18 17 21 21 C 1.50702 * 113.73325 * 221.81483 * 19 18 17 22 22 H 1.07996 * 120.00082 * 358.09933 * 21 19 18 23 23 C 1.37882 * 119.99818 * 178.10181 * 21 19 18 24 24 N 1.31515 * 119.99822 * 0.02562 * 23 21 19 25 25 Si 1.86800 * 119.99751 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47103 * 90.00062 * 25 23 21 27 27 H 1.48503 * 109.47193 * 210.00012 * 25 23 21 28 28 H 1.48499 * 109.47329 * 329.99900 * 25 23 21 29 29 C 1.48304 * 111.00332 * 289.34767 * 17 16 14 30 30 H 1.09003 * 109.47524 * 300.00558 * 1 2 3 31 31 H 1.09004 * 109.47199 * 60.00616 * 1 2 3 32 32 H 1.09003 * 109.47524 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46631 * 60.00218 * 4 2 1 34 34 H 1.08993 * 109.47131 * 300.00753 * 4 2 1 35 35 H 1.08994 * 109.47440 * 299.99969 * 5 4 2 36 36 H 1.08999 * 109.46797 * 180.02562 * 5 4 2 37 37 H 1.08999 * 109.47209 * 179.97438 * 6 5 4 38 38 H 1.09004 * 109.47494 * 59.99596 * 6 5 4 39 39 H 1.08994 * 109.46864 * 300.00432 * 7 6 5 40 40 H 1.08993 * 109.47173 * 179.97438 * 7 6 5 41 41 H 1.08995 * 109.47704 * 59.99215 * 11 10 8 42 42 H 1.09003 * 109.46463 * 299.99714 * 11 10 8 43 43 H 1.09002 * 109.46929 * 304.99296 * 12 11 10 44 44 H 1.08998 * 109.46905 * 184.99879 * 12 11 10 45 45 H 0.97002 * 120.00378 * 0.02562 * 13 12 11 46 46 H 1.09002 * 109.47513 * 59.99766 * 16 14 13 47 47 H 1.09007 * 109.47202 * 299.99995 * 16 14 13 48 48 H 1.08997 * 113.75944 * 23.26083 * 18 17 16 49 49 H 1.09000 * 113.75834 * 251.89949 * 18 17 16 50 50 H 0.96700 * 114.00311 * 181.89938 * 20 19 18 51 51 H 0.97006 * 119.99605 * 180.02562 * 24 23 21 52 52 H 1.09004 * 113.85839 * 108.14487 * 29 17 16 53 53 H 1.09000 * 113.75896 * 336.68350 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5700 -0.7208 -1.2494 6 6 4.0804 -1.4416 -0.0002 7 6 3.5704 -0.7203 1.2491 8 6 2.0399 -0.7212 1.2493 9 1 1.6766 -1.7488 1.2493 10 8 1.5635 -0.0474 2.4160 11 6 1.3699 -0.9039 3.5434 12 6 0.8608 -0.0803 4.7281 13 7 -0.4664 0.4556 4.4159 14 6 -1.1147 1.2180 5.3186 15 8 -0.5995 1.4600 6.3896 16 6 -2.4802 1.7689 4.9977 17 7 -2.9683 2.5607 6.1346 18 6 -4.3933 2.9184 5.9589 19 6 -4.5576 2.5720 7.4497 20 8 -4.3614 3.6854 8.3239 21 6 -5.8133 1.7977 7.7577 22 1 -6.5119 1.5654 6.9676 23 6 -6.0701 1.3859 9.0483 24 7 -5.2195 1.6692 10.0105 25 14 -7.6269 0.4267 9.4301 26 1 -7.3612 -1.0270 9.2835 27 1 -8.0560 0.7135 10.8226 28 1 -8.7011 0.8310 8.4879 29 6 -3.3091 1.6871 7.2836 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6767 -0.2075 -2.1392 34 1 1.6766 -1.7489 -1.2491 35 1 3.9329 0.3070 -1.2497 36 1 3.9333 -1.2343 -2.1396 37 1 5.1704 -1.4416 -0.0006 38 1 3.7174 -2.4694 0.0001 39 1 3.9334 0.3074 1.2487 40 1 3.9337 -1.2341 2.1390 41 1 2.3161 -1.3757 3.8082 42 1 0.6380 -1.6723 3.2943 43 1 1.5489 0.7428 4.9208 44 1 0.7976 -0.7154 5.6117 45 1 -0.8786 0.2618 3.5594 46 1 -3.1683 0.9456 4.8058 47 1 -2.4174 2.4035 4.1137 48 1 -4.9348 2.2492 5.2903 49 1 -4.5569 3.9719 5.7321 50 1 -4.4351 3.4660 9.2628 51 1 -5.4001 1.3791 10.9184 52 1 -2.6071 1.7577 8.1145 53 1 -3.5341 0.6586 7.0016 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653391119.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:56 Heat of formation + Delta-G solvation = -142.353315 kcal Electronic energy + Delta-G solvation = -30197.356313 eV Core-core repulsion = 26068.221151 eV Total energy + Delta-G solvation = -4129.135162 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.28811 -40.47542 -39.84740 -37.75872 -36.13122 -35.56191 -34.11365 -33.48475 -31.90099 -30.86497 -29.70387 -27.84402 -27.01702 -26.83783 -24.78306 -23.55071 -22.98588 -22.17347 -21.49874 -20.74467 -20.49355 -19.24285 -18.13480 -17.95409 -17.35107 -17.08135 -16.78352 -16.47291 -16.26535 -15.99287 -15.62329 -15.50844 -15.26835 -15.16786 -14.93582 -14.51083 -14.15006 -14.03970 -13.94130 -13.82985 -13.66945 -13.41195 -13.32515 -13.12835 -12.87011 -12.78800 -12.63147 -12.55722 -12.50790 -12.35925 -12.24724 -11.99153 -11.96201 -11.75856 -11.47496 -11.24427 -11.17242 -11.14194 -10.82874 -10.63120 -10.30058 -10.13211 -10.09788 -9.53218 -8.22128 -6.41195 1.42459 1.44460 1.55224 1.66815 2.12423 2.38489 2.61248 2.97826 3.19745 3.67972 3.78397 3.81131 3.94099 4.03151 4.04105 4.13198 4.16731 4.21738 4.28912 4.31423 4.35091 4.40669 4.43902 4.49577 4.51842 4.56139 4.57309 4.61185 4.65470 4.79581 4.85072 4.92822 4.93934 5.02422 5.07143 5.16399 5.18840 5.19196 5.29065 5.32464 5.38898 5.39710 5.42532 5.45686 5.48090 5.55191 5.75591 5.99213 6.22127 6.31033 6.60330 6.65347 7.31455 7.31831 7.50759 8.82961 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.022556 B = 0.001874 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.056955 B =14935.920857 C =15100.915305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.062 0.938 4 C -0.109 4.109 5 C -0.123 4.123 6 C -0.115 4.115 7 C -0.142 4.142 8 C 0.094 3.906 9 H 0.070 0.930 10 O -0.393 6.393 11 C 0.060 3.940 12 C 0.123 3.877 13 N -0.712 5.712 14 C 0.511 3.489 15 O -0.572 6.572 16 C -0.001 4.001 17 N -0.478 5.478 18 C 0.023 3.977 19 C 0.212 3.788 20 O -0.586 6.586 21 C -0.557 4.557 22 H 0.072 0.928 23 C 0.021 3.979 24 N -0.922 5.922 25 Si 0.971 3.029 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.264 1.264 29 C 0.016 3.984 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.055 0.945 44 H 0.076 0.924 45 H 0.415 0.585 46 H 0.085 0.915 47 H 0.127 0.873 48 H 0.092 0.908 49 H 0.081 0.919 50 H 0.380 0.620 51 H 0.272 0.728 52 H 0.037 0.963 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.586 -11.242 -24.967 31.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 H 0.080 0.920 4 C -0.147 4.147 5 C -0.160 4.160 6 C -0.152 4.152 7 C -0.180 4.180 8 C 0.037 3.963 9 H 0.088 0.912 10 O -0.313 6.313 11 C -0.017 4.017 12 C -0.001 4.001 13 N -0.367 5.367 14 C 0.298 3.702 15 O -0.450 6.450 16 C -0.132 4.132 17 N -0.201 5.201 18 C -0.105 4.105 19 C 0.171 3.829 20 O -0.396 6.396 21 C -0.595 4.595 22 H 0.090 0.910 23 C -0.179 4.179 24 N -0.562 5.562 25 Si 0.796 3.204 26 H -0.199 1.199 27 H -0.209 1.209 28 H -0.189 1.189 29 C -0.113 4.113 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.094 0.906 45 H 0.252 0.748 46 H 0.103 0.897 47 H 0.145 0.855 48 H 0.110 0.890 49 H 0.099 0.901 50 H 0.233 0.767 51 H 0.082 0.918 52 H 0.055 0.945 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.563 -10.070 -24.524 31.259 hybrid contribution -1.105 -1.501 0.823 2.038 sum 15.458 -11.572 -23.701 30.571 Atomic orbital electron populations 1.21770 0.94480 1.02045 1.01939 1.21193 0.96350 0.99650 0.93415 0.91954 1.21571 0.95561 1.00927 0.96619 1.21580 0.95525 1.00795 0.98134 1.21486 1.00761 0.99418 0.93548 1.22047 0.95689 1.01246 0.98976 1.22251 0.93211 0.96044 0.84788 0.91171 1.87954 1.86744 1.36105 1.20522 1.22741 1.01150 0.92363 0.85409 1.21363 0.83513 0.97941 0.97288 1.45753 1.19084 1.52268 1.19580 1.20861 0.87704 0.77853 0.83771 1.90707 1.69047 1.59407 1.25874 1.22696 0.93539 0.99275 0.97698 1.68496 1.17822 1.29972 1.03796 1.24132 0.87861 1.01683 0.96841 1.20245 0.91260 0.83838 0.87544 1.86022 1.94575 1.36876 1.22117 1.21920 1.07177 1.35298 0.95107 0.91015 1.25925 0.99880 0.96174 0.95919 1.69558 1.37481 1.47399 1.01803 0.85359 0.79051 0.78524 0.77483 1.19887 1.20862 1.18869 1.24299 0.98265 0.95393 0.93355 0.92836 0.92309 0.92242 0.90973 0.91169 0.92429 0.90822 0.91289 0.91247 0.92417 0.91700 0.90212 0.90878 0.92633 0.90554 0.74833 0.89684 0.85526 0.88975 0.90076 0.76685 0.91848 0.94463 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.05 71.98 0.65 -1.10 16 2 C -0.09 -1.07 2.46 -10.79 -0.03 -1.10 16 3 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.11 -0.98 5.20 30.59 0.16 -0.82 16 5 C -0.12 -1.06 5.92 30.59 0.18 -0.88 16 6 C -0.11 -1.01 5.92 30.59 0.18 -0.83 16 7 C -0.14 -1.70 5.54 30.61 0.17 -1.53 16 8 C 0.09 1.20 2.05 30.61 0.06 1.26 16 9 H 0.07 0.74 7.79 -2.39 -0.02 0.73 16 10 O -0.39 -6.64 9.26 -148.98 -1.38 -8.01 16 11 C 0.06 0.87 5.88 71.98 0.42 1.29 16 12 C 0.12 2.69 6.06 86.38 0.52 3.21 16 13 N -0.71 -17.22 5.50 -463.06 -2.55 -19.77 16 14 C 0.51 17.65 7.64 87.65 0.67 18.32 16 15 O -0.57 -26.10 15.55 -3.04 -0.05 -26.14 16 16 C 0.00 -0.02 5.31 85.56 0.45 0.43 16 17 N -0.48 -21.10 5.95 -914.49 -5.44 -26.54 16 18 C 0.02 0.99 7.36 86.41 0.64 1.63 16 19 C 0.21 11.24 1.40 -10.90 -0.02 11.23 16 20 O -0.59 -34.08 13.48 -148.98 -2.01 -36.09 16 21 C -0.56 -30.08 8.61 25.60 0.22 -29.86 16 22 H 0.07 3.67 7.81 -2.91 -0.02 3.65 16 23 C 0.02 1.11 5.40 84.66 0.46 1.56 16 24 N -0.92 -52.02 11.20 21.45 0.24 -51.78 16 25 Si 0.97 42.08 29.54 68.60 2.03 44.11 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 27 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 28 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 29 C 0.02 0.83 6.17 86.34 0.53 1.37 16 30 H 0.05 0.77 7.68 -2.39 -0.02 0.75 16 31 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 34 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.06 0.75 7.87 -2.39 -0.02 0.73 16 41 H 0.08 0.92 7.87 -2.39 -0.02 0.90 16 42 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 43 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.41 7.41 8.47 -92.71 -0.79 6.62 16 46 H 0.09 2.43 7.70 -2.39 -0.02 2.41 16 47 H 0.13 3.30 8.14 -2.38 -0.02 3.28 16 48 H 0.09 3.42 7.74 -2.39 -0.02 3.40 16 49 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 50 H 0.38 22.74 6.60 -74.06 -0.49 22.25 16 51 H 0.27 14.49 8.31 -92.70 -0.77 13.72 16 52 H 0.04 2.16 8.10 -2.38 -0.02 2.14 16 53 H 0.05 2.68 7.74 -2.39 -0.02 2.66 16 Total: -1.00 -71.53 417.52 -4.27 -75.80 By element: Atomic # 1 Polarization: 44.62 SS G_CDS: -0.39 Total: 44.23 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: 5.28 Total: 4.19 kcal Atomic # 7 Polarization: -90.33 SS G_CDS: -7.75 Total: -98.09 kcal Atomic # 8 Polarization: -66.81 SS G_CDS: -3.44 Total: -70.25 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -71.53 -4.27 -75.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653391119.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.554 kcal (2) G-P(sol) polarization free energy of solvation -71.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds