Wall clock time and date at job start Wed Apr 1 2020 00:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00258 * 2 1 4 4 C 1.53001 * 109.47283 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47213 * 64.99963 * 4 3 2 6 6 C 1.36946 * 119.99641 * 92.49002 * 5 4 3 7 7 H 1.08006 * 119.99672 * 213.91601 * 6 5 4 8 8 C 1.38803 * 120.00012 * 33.91730 * 6 5 4 9 9 N 1.31619 * 120.00150 * 22.99978 * 8 6 5 10 10 Si 1.86801 * 120.00056 * 203.00499 * 8 6 5 11 11 H 1.48500 * 109.47199 * 180.02562 * 10 8 6 12 12 H 1.48507 * 109.46706 * 299.99710 * 10 8 6 13 13 H 1.48494 * 109.47196 * 59.99638 * 10 8 6 14 14 C 1.46496 * 120.00312 * 272.49597 * 5 4 3 15 15 C 1.53041 * 109.45800 * 240.02661 * 14 5 4 16 16 C 1.53192 * 109.31245 * 178.60040 * 15 14 5 17 17 N 1.46923 * 108.76816 * 54.65558 * 16 15 14 18 18 C 1.34776 * 120.63449 * 126.36357 * 17 16 15 19 19 O 1.21279 * 119.99685 * 180.02562 * 18 17 16 20 20 C 1.50696 * 119.99847 * 0.02562 * 18 17 16 21 21 H 1.08994 * 110.44102 * 302.55095 * 20 18 17 22 22 C 1.54816 * 110.48377 * 65.23597 * 20 18 17 23 23 C 1.55003 * 102.09185 * 97.79712 * 22 20 18 24 24 O 1.44376 * 103.49174 * 37.02002 * 23 22 20 25 25 C 1.43751 * 106.97781 * 319.94343 * 24 23 22 26 26 H 1.09007 * 110.00095 * 267.02199 * 25 24 23 27 27 C 1.52990 * 109.88315 * 145.93724 * 25 24 23 28 28 C 1.46935 * 118.73374 * 306.38424 * 17 16 15 29 29 C 1.53039 * 109.46289 * 119.97209 * 14 5 4 30 30 H 1.08998 * 109.47605 * 59.99233 * 1 2 3 31 31 H 1.08996 * 109.47450 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46504 * 299.99914 * 1 2 3 33 33 H 1.09003 * 109.47091 * 60.00408 * 3 2 1 34 34 H 1.08999 * 109.47401 * 300.00266 * 3 2 1 35 35 H 1.09005 * 109.46897 * 305.00161 * 4 3 2 36 36 H 1.09004 * 109.47102 * 185.00442 * 4 3 2 37 37 H 0.97002 * 120.00227 * 179.97438 * 9 8 6 38 38 H 1.09000 * 109.45883 * 359.97438 * 14 5 4 39 39 H 1.09003 * 109.50019 * 298.56095 * 15 14 5 40 40 H 1.09003 * 109.49899 * 58.65895 * 15 14 5 41 41 H 1.08994 * 109.59597 * 294.86549 * 16 15 14 42 42 H 1.08998 * 109.70167 * 174.50382 * 16 15 14 43 43 H 1.08997 * 110.90438 * 215.98801 * 22 20 18 44 44 H 1.08996 * 110.91045 * 339.59603 * 22 20 18 45 45 H 1.09001 * 110.61288 * 278.51948 * 23 22 20 46 46 H 1.08997 * 110.75536 * 155.58636 * 23 22 20 47 47 H 1.09001 * 109.47285 * 302.17137 * 27 25 24 48 48 H 1.09000 * 109.47132 * 62.16760 * 27 25 24 49 49 H 1.08998 * 109.47787 * 182.16729 * 27 25 24 50 50 H 1.08996 * 109.58442 * 293.81806 * 28 17 16 51 51 H 1.09000 * 109.58271 * 173.39577 * 28 17 16 52 52 H 1.09000 * 109.49421 * 301.33448 * 29 14 5 53 53 H 1.09002 * 109.50051 * 61.39998 * 29 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.3150 1.3485 -2.3229 7 1 4.1128 1.0078 -3.3277 8 6 4.9189 2.5811 -2.1164 9 7 5.5692 2.8160 -0.9964 10 14 4.8084 3.9068 -3.4278 11 1 5.5308 5.1198 -2.9676 12 1 5.4245 3.4116 -4.6851 13 1 3.3829 4.2423 -3.6737 14 6 4.0528 -0.8946 -1.3600 15 6 5.4917 -1.3071 -1.6785 16 6 5.5757 -2.8348 -1.7554 17 7 4.5819 -3.3146 -2.7254 18 6 4.9485 -4.1176 -3.7439 19 8 4.1187 -4.5065 -4.5383 20 6 6.3894 -4.5321 -3.8956 21 1 7.0311 -3.6550 -3.9782 22 6 6.8270 -5.4168 -2.7028 23 6 6.6750 -6.8452 -3.2851 24 8 7.0938 -6.6954 -4.6586 25 6 6.5616 -5.4443 -5.1256 26 1 5.5962 -5.6057 -5.6054 27 6 7.5343 -4.8027 -6.1170 28 6 3.1810 -2.9019 -2.5643 29 6 3.1240 -1.3735 -2.4781 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5139 0.8900 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8464 -0.8899 35 1 3.8515 0.5681 0.8410 36 1 3.9786 2.1765 0.0890 37 1 5.9915 3.6773 -0.8522 38 1 3.7469 -1.3448 -0.4156 39 1 5.7901 -0.8776 -2.6349 40 1 6.1561 -0.9454 -0.8937 41 1 5.3653 -3.2622 -0.7751 42 1 6.5736 -3.1322 -2.0772 43 1 7.8630 -5.2164 -2.4295 44 1 6.1658 -5.2726 -1.8484 45 1 5.6364 -7.1720 -3.2338 46 1 7.3234 -7.5471 -2.7606 47 1 8.5022 -4.6608 -5.6362 48 1 7.6511 -5.4530 -6.9839 49 1 7.1426 -3.8372 -6.4372 50 1 2.7754 -3.3349 -1.6499 51 1 2.5992 -3.2415 -3.4212 52 1 2.1028 -1.0591 -2.2623 53 1 3.4445 -0.9429 -3.4268 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670999329.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:11 Heat of formation + Delta-G solvation = -122.566251 kcal Electronic energy + Delta-G solvation = -32264.702094 eV Core-core repulsion = 28136.424964 eV Total energy + Delta-G solvation = -4128.277130 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.86007 -39.98130 -39.03255 -38.22745 -36.62018 -34.21564 -33.45401 -32.55888 -32.11172 -31.68960 -29.78624 -27.62096 -27.06173 -26.46082 -24.87783 -24.15556 -23.29671 -22.83072 -22.12296 -21.22920 -20.09967 -18.52509 -17.90522 -17.50275 -17.21111 -17.07623 -16.74834 -16.62812 -16.40571 -16.05277 -15.82717 -15.67615 -15.55418 -15.13109 -14.94728 -14.54645 -14.33109 -14.15999 -13.83392 -13.59818 -13.42196 -13.41133 -13.23900 -13.09652 -12.98218 -12.70442 -12.60489 -12.55679 -12.42686 -12.27808 -12.11746 -12.06947 -12.00756 -11.90893 -11.82623 -11.67269 -11.44054 -11.07710 -10.82020 -10.56502 -10.45054 -10.39612 -9.65214 -8.51293 -7.79247 -5.32413 1.44391 1.48417 1.52159 1.53433 1.97297 2.52808 2.84296 3.13869 3.28034 3.43914 3.45317 3.62622 3.70578 3.93370 4.06504 4.18723 4.20317 4.27592 4.32426 4.41275 4.42274 4.46129 4.49822 4.52842 4.63130 4.64538 4.64646 4.69566 4.72435 4.79414 4.82439 4.85751 4.86683 4.90317 4.92930 4.96704 5.01487 5.09126 5.14950 5.23303 5.24377 5.30101 5.46940 5.64760 5.66412 5.72128 5.82580 5.89298 6.40920 6.46682 6.51413 7.09179 7.22922 7.95109 8.46345 9.17666 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012213 B = 0.003470 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.110530 B = 8067.006884 C = 9329.182461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.397 6.397 3 C 0.056 3.944 4 C 0.148 3.852 5 N -0.585 5.585 6 C -0.242 4.242 7 H 0.046 0.954 8 C -0.032 4.032 9 N -0.912 5.912 10 Si 0.939 3.061 11 H -0.292 1.292 12 H -0.283 1.283 13 H -0.286 1.286 14 C 0.185 3.815 15 C -0.129 4.129 16 C 0.114 3.886 17 N -0.600 5.600 18 C 0.519 3.481 19 O -0.585 6.585 20 C -0.140 4.140 21 H 0.125 0.875 22 C -0.138 4.138 23 C 0.042 3.958 24 O -0.388 6.388 25 C 0.080 3.920 26 H 0.065 0.935 27 C -0.147 4.147 28 C 0.122 3.878 29 C -0.120 4.120 30 H 0.030 0.970 31 H 0.096 0.904 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.024 0.976 35 H 0.033 0.967 36 H 0.086 0.914 37 H 0.251 0.749 38 H 0.061 0.939 39 H 0.039 0.961 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.114 0.886 44 H 0.095 0.905 45 H 0.050 0.950 46 H 0.121 0.879 47 H 0.075 0.925 48 H 0.066 0.934 49 H 0.069 0.931 50 H 0.084 0.916 51 H 0.072 0.928 52 H 0.065 0.935 53 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.421 -14.279 2.034 14.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.316 6.316 3 C -0.023 4.023 4 C 0.022 3.978 5 N -0.305 5.305 6 C -0.372 4.372 7 H 0.063 0.937 8 C -0.228 4.228 9 N -0.558 5.558 10 Si 0.769 3.231 11 H -0.218 1.218 12 H -0.210 1.210 13 H -0.213 1.213 14 C 0.079 3.921 15 C -0.169 4.169 16 C -0.009 4.009 17 N -0.331 5.331 18 C 0.308 3.692 19 O -0.466 6.466 20 C -0.162 4.162 21 H 0.143 0.857 22 C -0.176 4.176 23 C -0.034 4.034 24 O -0.308 6.308 25 C 0.022 3.978 26 H 0.083 0.917 27 C -0.204 4.204 28 C 0.000 4.000 29 C -0.160 4.160 30 H 0.049 0.951 31 H 0.115 0.885 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.042 0.958 35 H 0.051 0.949 36 H 0.103 0.897 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.110 0.890 42 H 0.122 0.878 43 H 0.132 0.868 44 H 0.114 0.886 45 H 0.068 0.932 46 H 0.139 0.861 47 H 0.094 0.906 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.102 0.898 51 H 0.091 0.909 52 H 0.083 0.917 53 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 0.319 -14.626 1.575 14.714 hybrid contribution -0.662 1.862 -0.768 2.120 sum -0.343 -12.764 0.807 12.794 Atomic orbital electron populations 1.22811 0.81188 1.03135 0.99722 1.87876 1.19974 1.28483 1.95250 1.23194 0.97106 0.84031 0.97968 1.20995 0.89127 1.00498 0.87188 1.43935 1.75000 1.00506 1.11028 1.18936 1.31557 0.99343 0.87411 0.93665 1.25466 0.97307 1.01605 0.98472 1.70042 1.35005 1.23161 1.27548 0.85783 0.77355 0.79918 0.80030 1.21792 1.20966 1.21287 1.20344 0.92204 0.83769 0.95801 1.22186 0.99140 0.94359 1.01170 1.22031 0.92395 0.93645 0.92787 1.48189 1.09767 1.47435 1.27744 1.20791 0.91113 0.77647 0.79655 1.90629 1.54398 1.57533 1.44038 1.22743 0.93108 1.01844 0.98462 0.85739 1.23284 1.04709 0.93362 0.96234 1.23725 1.00373 0.97707 0.81623 1.88843 1.75372 1.38463 1.28128 1.22700 0.97893 0.83280 0.93956 0.91734 1.21901 0.99338 1.00432 0.98718 1.21547 0.81850 0.94406 1.02243 1.22078 1.00773 0.93805 0.99299 0.95081 0.88532 0.93601 0.93564 0.95809 0.94896 0.89702 0.93983 0.92108 0.94209 0.92073 0.89041 0.87791 0.86782 0.88621 0.93186 0.86102 0.90617 0.91449 0.91238 0.89833 0.90950 0.91663 0.95059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.97 16 2 O -0.40 -13.78 9.54 -148.98 -1.42 -15.21 16 3 C 0.06 2.12 6.28 71.98 0.45 2.57 16 4 C 0.15 6.53 5.65 86.38 0.49 7.02 16 5 N -0.59 -26.70 2.37 -677.89 -1.60 -28.30 16 6 C -0.24 -12.41 8.27 84.03 0.69 -11.71 16 7 H 0.05 2.43 6.87 -2.91 -0.02 2.41 16 8 C -0.03 -1.65 4.93 84.86 0.42 -1.23 16 9 N -0.91 -49.65 11.35 21.65 0.25 -49.41 16 10 Si 0.94 43.34 29.61 68.60 2.03 45.37 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 14 C 0.19 7.01 2.06 45.02 0.09 7.11 16 15 C -0.13 -4.43 5.30 30.67 0.16 -4.27 16 16 C 0.11 2.76 5.10 86.36 0.44 3.20 16 17 N -0.60 -16.83 2.95 -818.92 -2.42 -19.24 16 18 C 0.52 15.24 6.99 87.66 0.61 15.86 16 19 O -0.58 -21.52 14.67 -3.03 -0.04 -21.57 16 20 C -0.14 -3.14 2.10 -10.55 -0.02 -3.16 16 21 H 0.12 2.52 7.15 -2.39 -0.02 2.51 16 22 C -0.14 -2.23 5.41 31.90 0.17 -2.06 16 23 C 0.04 0.76 7.72 72.67 0.56 1.32 16 24 O -0.39 -9.40 11.19 -148.98 -1.67 -11.06 16 25 C 0.08 1.96 3.67 30.96 0.11 2.07 16 26 H 0.06 1.96 6.44 -2.38 -0.02 1.95 16 27 C -0.15 -3.02 9.36 71.98 0.67 -2.35 16 28 C 0.12 3.70 6.43 86.36 0.56 4.26 16 29 C -0.12 -4.32 5.30 30.67 0.16 -4.16 16 30 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.03 1.39 7.97 -2.38 -0.02 1.37 16 36 H 0.09 4.27 5.33 -2.38 -0.01 4.26 16 37 H 0.25 13.37 8.31 -92.71 -0.77 12.60 16 38 H 0.06 2.23 7.79 -2.39 -0.02 2.21 16 39 H 0.04 1.60 7.71 -2.39 -0.02 1.58 16 40 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.10 2.01 5.15 -2.39 -0.01 2.00 16 43 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.10 1.42 6.69 -2.39 -0.02 1.40 16 45 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 49 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 51 H 0.07 2.37 7.00 -2.39 -0.02 2.35 16 52 H 0.06 2.45 7.58 -2.39 -0.02 2.43 16 53 H 0.03 1.30 7.03 -2.39 -0.02 1.28 16 Total: -1.00 -64.45 403.58 2.83 -61.62 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.88 Total: 21.36 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: 6.83 Total: 16.44 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -3.77 Total: -96.95 kcal Atomic # 8 Polarization: -44.71 SS G_CDS: -3.13 Total: -47.84 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -64.45 2.83 -61.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670999329.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.944 kcal (2) G-P(sol) polarization free energy of solvation -64.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds