Wall clock time and date at job start Wed Apr 1 2020 00:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00437 * 2 1 4 4 C 1.52998 * 109.47498 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47128 * 64.99685 * 4 3 2 6 6 C 1.36936 * 119.99800 * 264.51024 * 5 4 3 7 7 H 1.07995 * 120.00044 * 138.55671 * 6 5 4 8 8 C 1.38813 * 120.00156 * 318.54597 * 6 5 4 9 9 N 1.31615 * 119.99971 * 340.62306 * 8 6 5 10 10 Si 1.86807 * 119.99996 * 160.61516 * 8 6 5 11 11 H 1.48495 * 109.46884 * 60.00276 * 10 8 6 12 12 H 1.48493 * 109.47037 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47141 * 300.00376 * 10 8 6 14 14 C 1.46497 * 120.00132 * 84.51264 * 5 4 3 15 15 C 1.53031 * 109.46340 * 119.99626 * 14 5 4 16 16 C 1.53188 * 109.31480 * 181.38415 * 15 14 5 17 17 N 1.46922 * 108.77700 * 305.36500 * 16 15 14 18 18 C 1.34778 * 120.63388 * 233.58003 * 17 16 15 19 19 O 1.21280 * 119.99650 * 5.19529 * 18 17 16 20 20 C 1.50691 * 120.00166 * 185.18851 * 18 17 16 21 21 H 1.09007 * 110.43985 * 322.50630 * 20 18 17 22 22 C 1.54812 * 110.49099 * 199.96373 * 20 18 17 23 23 C 1.55219 * 101.98949 * 220.52022 * 22 20 18 24 24 O 1.44387 * 103.56779 * 36.87411 * 23 22 20 25 25 C 1.43741 * 106.97273 * 320.01756 * 24 23 22 26 26 H 1.09004 * 109.87450 * 267.08170 * 25 24 23 27 27 C 1.53000 * 109.87841 * 145.93830 * 25 24 23 28 28 C 1.46931 * 118.73809 * 53.86171 * 17 16 15 29 29 C 1.53042 * 109.45917 * 240.06792 * 14 5 4 30 30 H 1.09000 * 109.46735 * 60.00160 * 1 2 3 31 31 H 1.08998 * 109.46948 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47238 * 300.00661 * 1 2 3 33 33 H 1.08998 * 109.46930 * 59.99705 * 3 2 1 34 34 H 1.09005 * 109.46922 * 299.99845 * 3 2 1 35 35 H 1.09000 * 109.46560 * 304.99737 * 4 3 2 36 36 H 1.08996 * 109.47331 * 185.00251 * 4 3 2 37 37 H 0.97003 * 119.99993 * 179.97438 * 9 8 6 38 38 H 1.08997 * 109.44813 * 0.02826 * 14 5 4 39 39 H 1.09006 * 109.49573 * 61.43175 * 15 14 5 40 40 H 1.08999 * 109.52760 * 301.35787 * 15 14 5 41 41 H 1.09006 * 109.58773 * 185.57617 * 16 15 14 42 42 H 1.08999 * 109.70131 * 65.22599 * 16 15 14 43 43 H 1.09004 * 110.90480 * 338.63995 * 22 20 18 44 44 H 1.08998 * 110.91137 * 102.23881 * 22 20 18 45 45 H 1.09005 * 110.51948 * 278.38253 * 23 22 20 46 46 H 1.09002 * 110.78323 * 155.49587 * 23 22 20 47 47 H 1.09002 * 109.46978 * 301.84992 * 27 25 24 48 48 H 1.09001 * 109.47550 * 61.85115 * 27 25 24 49 49 H 1.09006 * 109.46988 * 181.85454 * 27 25 24 50 50 H 1.09006 * 109.58628 * 65.92044 * 28 17 16 51 51 H 1.08989 * 109.58761 * 186.35108 * 28 17 16 52 52 H 1.08998 * 109.49832 * 298.56433 * 29 14 5 53 53 H 1.09000 * 109.49852 * 58.62760 * 29 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9768 0.5638 -1.2508 6 6 4.2061 -0.7852 -1.3023 7 1 3.8824 -1.3557 -2.1602 8 6 4.8549 -1.4195 -0.2517 9 7 5.5778 -0.7177 0.5952 10 14 4.7019 -3.2692 -0.0398 11 1 5.2271 -3.9511 -1.2499 12 1 5.4827 -3.6975 1.1485 13 1 3.2739 -3.6291 0.1507 14 6 4.1726 1.3863 -2.4472 15 6 5.6273 1.2759 -2.9093 16 6 5.8368 2.1640 -4.1398 17 7 4.8491 1.7951 -5.1630 18 6 5.2409 1.4769 -6.4127 19 8 6.4221 1.4014 -6.6770 20 6 4.2113 1.2148 -7.4814 21 1 3.3550 0.6854 -7.0634 22 6 4.8328 0.4058 -8.6458 23 6 4.1997 1.0894 -9.8873 24 8 4.1487 2.4840 -9.5168 25 6 3.7621 2.5368 -8.1334 26 1 2.6798 2.6400 -8.0547 27 6 4.4513 3.7168 -7.4453 28 6 3.4254 1.7858 -4.7997 29 6 3.2434 0.8966 -3.5603 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.8507 0.5685 0.8428 36 1 3.9786 2.1764 0.0903 37 1 6.0309 -1.1608 1.3295 38 1 3.9435 2.4261 -2.2143 39 1 5.8498 0.2401 -3.1661 40 1 6.2900 1.6024 -2.1079 41 1 6.8427 2.0136 -4.5320 42 1 5.7046 3.2103 -3.8646 43 1 5.9178 0.5096 -8.6560 44 1 4.5444 -0.6437 -8.5877 45 1 3.1963 0.7029 -10.0662 46 1 4.8266 0.9489 -10.7679 47 1 5.5321 3.6124 -7.5408 48 1 4.1333 4.6476 -7.9150 49 1 4.1795 3.7311 -6.3897 50 1 3.0989 2.8013 -4.5753 51 1 2.8397 1.3859 -5.6273 52 1 3.4883 -0.1356 -3.8109 53 1 2.2088 0.9530 -3.2217 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670999330.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:15 Heat of formation + Delta-G solvation = -117.532660 kcal Electronic energy + Delta-G solvation = -32348.159742 eV Core-core repulsion = 28220.100885 eV Total energy + Delta-G solvation = -4128.058857 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.90539 -39.93888 -38.96964 -38.20592 -36.52538 -34.13943 -33.41252 -32.47791 -32.07339 -31.78985 -29.74064 -27.52638 -27.10799 -26.35837 -24.86002 -24.25241 -23.13654 -23.00196 -22.14609 -21.20993 -19.62623 -18.57733 -17.97159 -17.57949 -17.26840 -17.07065 -16.69342 -16.57281 -16.51140 -16.00437 -15.80066 -15.67450 -15.43979 -15.19957 -14.91666 -14.64296 -14.34642 -13.94941 -13.66797 -13.50295 -13.43359 -13.28759 -13.24172 -13.09679 -13.05584 -12.76204 -12.70885 -12.55644 -12.34379 -12.24305 -12.16958 -12.01735 -11.94990 -11.87936 -11.75725 -11.51149 -11.42701 -11.09397 -10.90983 -10.51411 -10.37761 -10.28919 -9.59533 -8.37006 -7.72469 -5.32803 1.44311 1.47726 1.52943 1.57738 2.01428 2.56881 2.87169 3.24035 3.32251 3.39809 3.53645 3.63911 3.80418 3.90405 4.10268 4.17774 4.21385 4.26569 4.29829 4.35555 4.42297 4.46052 4.49214 4.55183 4.58081 4.61912 4.67101 4.69937 4.75459 4.81714 4.84056 4.86769 4.89804 4.92085 4.94501 4.95710 4.98856 5.04996 5.12930 5.17327 5.21375 5.27595 5.50861 5.65802 5.69720 5.76710 5.84294 5.92129 6.46118 6.55315 6.71080 7.17152 7.32165 7.99781 8.51388 9.24482 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013848 B = 0.003269 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.453165 B = 8563.094864 C = 9139.397872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.400 6.400 3 C 0.055 3.945 4 C 0.150 3.850 5 N -0.584 5.584 6 C -0.221 4.221 7 H 0.041 0.959 8 C -0.028 4.028 9 N -0.919 5.919 10 Si 0.936 3.064 11 H -0.284 1.284 12 H -0.298 1.298 13 H -0.283 1.283 14 C 0.174 3.826 15 C -0.118 4.118 16 C 0.123 3.877 17 N -0.603 5.603 18 C 0.526 3.474 19 O -0.588 6.588 20 C -0.145 4.145 21 H 0.132 0.868 22 C -0.147 4.147 23 C 0.051 3.949 24 O -0.395 6.395 25 C 0.094 3.906 26 H 0.110 0.890 27 C -0.162 4.162 28 C 0.110 3.890 29 C -0.128 4.128 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.245 0.755 38 H 0.068 0.932 39 H 0.028 0.972 40 H 0.046 0.954 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.099 0.901 45 H 0.088 0.912 46 H 0.102 0.898 47 H 0.036 0.964 48 H 0.076 0.924 49 H 0.084 0.916 50 H 0.097 0.903 51 H 0.107 0.893 52 H 0.038 0.962 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.347 8.858 -14.387 20.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.023 4.023 4 C 0.024 3.976 5 N -0.303 5.303 6 C -0.353 4.353 7 H 0.058 0.942 8 C -0.224 4.224 9 N -0.564 5.564 10 Si 0.767 3.233 11 H -0.210 1.210 12 H -0.224 1.224 13 H -0.209 1.209 14 C 0.068 3.932 15 C -0.158 4.158 16 C -0.001 4.001 17 N -0.335 5.335 18 C 0.316 3.684 19 O -0.469 6.469 20 C -0.166 4.166 21 H 0.149 0.851 22 C -0.185 4.185 23 C -0.025 4.025 24 O -0.314 6.314 25 C 0.036 3.964 26 H 0.127 0.873 27 C -0.220 4.220 28 C -0.011 4.011 29 C -0.168 4.168 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.054 0.946 38 H 0.087 0.913 39 H 0.047 0.953 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.106 0.894 43 H 0.085 0.915 44 H 0.118 0.882 45 H 0.106 0.894 46 H 0.121 0.879 47 H 0.055 0.945 48 H 0.095 0.905 49 H 0.103 0.897 50 H 0.116 0.884 51 H 0.125 0.875 52 H 0.057 0.943 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.479 8.790 -14.479 19.918 hybrid contribution 0.429 -1.453 1.030 1.832 sum -10.050 7.337 -13.449 18.323 Atomic orbital electron populations 1.22805 0.81495 1.02488 1.00162 1.88128 1.19660 1.28905 1.95223 1.23261 0.96436 0.83917 0.98727 1.20824 0.89673 0.96022 0.91105 1.43832 1.76263 1.03693 1.06543 1.18650 1.28454 0.84430 1.03732 0.94194 1.25629 0.96541 0.99840 1.00428 1.70090 1.32553 1.35696 1.18104 0.85839 0.77284 0.83644 0.76571 1.21004 1.22416 1.20931 1.20517 0.91677 0.93905 0.87139 1.22069 0.99674 0.98307 0.95769 1.21522 0.92498 0.98766 0.87278 1.48225 1.08776 1.66897 1.09567 1.20636 0.89524 0.74870 0.83374 1.90645 1.20409 1.54094 1.81729 1.22963 0.98839 0.99620 0.95227 0.85071 1.23206 1.01545 1.00575 0.93177 1.23737 1.01597 0.80019 0.97181 1.88873 1.90614 1.26225 1.25738 1.22711 0.99969 0.92584 0.81162 0.87281 1.22126 1.00038 0.98497 1.01293 1.22155 0.79572 1.01582 0.97838 1.22252 1.00350 0.98916 0.95275 0.93407 0.90255 0.93749 0.93756 0.93363 0.92852 0.93311 0.94608 0.91340 0.95269 0.93497 0.91726 0.89444 0.91505 0.88224 0.89363 0.87946 0.94476 0.90499 0.89702 0.88449 0.87473 0.94281 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.40 -15.93 10.44 -148.98 -1.56 -17.48 16 3 C 0.06 1.95 6.28 71.98 0.45 2.41 16 4 C 0.15 6.51 5.55 86.38 0.48 6.99 16 5 N -0.58 -26.35 2.29 -677.92 -1.55 -27.90 16 6 C -0.22 -11.64 7.95 84.03 0.67 -10.97 16 7 H 0.04 2.18 6.94 -2.91 -0.02 2.16 16 8 C -0.03 -1.54 4.91 84.86 0.42 -1.12 16 9 N -0.92 -53.49 11.72 21.65 0.25 -53.24 16 10 Si 0.94 46.09 29.60 68.60 2.03 48.12 16 11 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 12 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 13 H -0.28 -13.82 7.11 99.48 0.71 -13.12 16 14 C 0.17 6.24 2.59 45.02 0.12 6.36 16 15 C -0.12 -4.53 5.30 30.67 0.16 -4.37 16 16 C 0.12 3.77 6.44 86.36 0.56 4.32 16 17 N -0.60 -16.13 2.21 -818.08 -1.81 -17.93 16 18 C 0.53 15.15 4.72 87.65 0.41 15.57 16 19 O -0.59 -22.20 14.69 -3.03 -0.04 -22.25 16 20 C -0.15 -2.97 2.59 -10.55 -0.03 -3.00 16 21 H 0.13 2.01 6.23 -2.38 -0.01 1.99 16 22 C -0.15 -3.00 6.65 31.97 0.21 -2.79 16 23 C 0.05 0.83 7.72 72.74 0.56 1.39 16 24 O -0.39 -8.61 11.19 -148.98 -1.67 -10.27 16 25 C 0.09 1.71 4.05 30.96 0.13 1.84 16 26 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 27 C -0.16 -3.26 8.41 71.98 0.61 -2.66 16 28 C 0.11 2.27 5.56 86.51 0.48 2.75 16 29 C -0.13 -3.79 5.31 30.82 0.16 -3.63 16 30 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 35 H 0.05 2.80 5.83 -2.39 -0.01 2.79 16 36 H 0.05 1.95 8.04 -2.39 -0.02 1.94 16 37 H 0.24 14.10 8.31 -92.71 -0.77 13.33 16 38 H 0.07 2.16 7.87 -2.39 -0.02 2.14 16 39 H 0.03 1.33 7.71 -2.38 -0.02 1.32 16 40 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.06 2.26 7.00 -2.38 -0.02 2.24 16 42 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.07 1.81 6.81 -2.38 -0.02 1.79 16 44 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 46 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.04 0.98 7.22 -2.39 -0.02 0.97 16 48 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.08 1.53 6.02 -2.38 -0.01 1.51 16 50 H 0.10 1.51 7.99 -2.38 -0.02 1.49 16 51 H 0.11 1.60 5.44 -2.39 -0.01 1.58 16 52 H 0.04 1.40 7.10 -2.39 -0.02 1.38 16 53 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -72.48 402.86 3.18 -69.30 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.88 Total: 16.55 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 6.64 Total: 15.09 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -3.10 Total: -99.07 kcal Atomic # 8 Polarization: -46.74 SS G_CDS: -3.27 Total: -50.00 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -72.48 3.18 -69.30 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670999330.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.229 kcal (2) G-P(sol) polarization free energy of solvation -72.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds