Wall clock time and date at job start Wed Apr 1 2020 00:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42898 * 114.00161 * 2 1 4 4 C 1.52998 * 109.47496 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46927 * 64.99939 * 4 3 2 6 6 C 1.36937 * 120.00330 * 270.00360 * 5 4 3 7 7 H 1.07994 * 120.00588 * 142.67713 * 6 5 4 8 8 C 1.38815 * 119.99741 * 322.67644 * 6 5 4 9 9 N 1.31620 * 120.00077 * 337.91175 * 8 6 5 10 10 Si 1.86804 * 119.99837 * 157.90752 * 8 6 5 11 11 H 1.48505 * 109.46713 * 90.00504 * 10 8 6 12 12 H 1.48497 * 109.47368 * 210.00103 * 10 8 6 13 13 H 1.48498 * 109.47339 * 330.00471 * 10 8 6 14 14 C 1.46500 * 120.00282 * 90.00393 * 5 4 3 15 15 C 1.53036 * 109.46458 * 122.04346 * 14 5 4 16 16 C 1.53164 * 109.32794 * 181.38838 * 15 14 5 17 17 N 1.46924 * 108.76934 * 305.35616 * 16 15 14 18 18 C 1.34773 * 120.63094 * 233.59103 * 17 16 15 19 19 O 1.21286 * 119.99917 * 175.38191 * 18 17 16 20 20 C 1.50704 * 120.00129 * 355.37903 * 18 17 16 21 21 H 1.08998 * 110.45426 * 31.40534 * 20 18 17 22 22 C 1.54512 * 110.51042 * 154.15854 * 20 18 17 23 23 C 1.54476 * 104.05929 * 118.64673 * 22 20 18 24 24 O 1.44433 * 104.80560 * 336.02039 * 23 22 20 25 25 C 1.44424 * 105.27084 * 40.51241 * 24 23 22 26 26 H 1.09000 * 110.46845 * 78.37166 * 25 24 23 27 27 C 1.53005 * 110.36565 * 200.65453 * 25 24 23 28 28 C 1.46928 * 118.73967 * 53.60707 * 17 16 15 29 29 C 1.53040 * 109.45874 * 242.10451 * 14 5 4 30 30 H 1.09004 * 109.47328 * 59.99697 * 1 2 3 31 31 H 1.08992 * 109.47525 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47045 * 300.00069 * 1 2 3 33 33 H 1.09006 * 109.47071 * 60.00199 * 3 2 1 34 34 H 1.08994 * 109.47406 * 299.99929 * 3 2 1 35 35 H 1.09003 * 109.47383 * 305.00537 * 4 3 2 36 36 H 1.08995 * 109.47814 * 185.00011 * 4 3 2 37 37 H 0.96997 * 119.99807 * 179.97438 * 9 8 6 38 38 H 1.09003 * 109.45737 * 2.06880 * 14 5 4 39 39 H 1.08998 * 109.49578 * 301.32715 * 15 14 5 40 40 H 1.08998 * 109.49684 * 61.42057 * 15 14 5 41 41 H 1.08997 * 109.58844 * 185.57307 * 16 15 14 42 42 H 1.08997 * 109.59003 * 65.14156 * 16 15 14 43 43 H 1.08995 * 110.51057 * 237.29133 * 22 20 18 44 44 H 1.08997 * 110.50741 * 0.02562 * 22 20 18 45 45 H 1.08998 * 110.37356 * 217.19094 * 23 22 20 46 46 H 1.08999 * 110.37494 * 94.85292 * 23 22 20 47 47 H 1.09004 * 109.46508 * 169.75701 * 27 25 24 48 48 H 1.08996 * 109.47563 * 289.75603 * 27 25 24 49 49 H 1.08993 * 109.47344 * 49.76385 * 27 25 24 50 50 H 1.08993 * 109.58962 * 186.60424 * 28 17 16 51 51 H 1.09005 * 109.58499 * 66.17952 * 28 17 16 52 52 H 1.08994 * 109.49340 * 298.57104 * 29 14 5 53 53 H 1.09000 * 109.49933 * 58.64181 * 29 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0977 -0.7975 -1.3345 7 1 3.8270 -1.3087 -2.2464 8 6 4.5686 -1.5204 -0.2471 9 7 5.2919 -0.9237 0.6765 10 14 4.1754 -3.3403 -0.0945 11 1 5.2363 -4.1338 -0.7654 12 1 4.1109 -3.7141 1.3412 13 1 2.8666 -3.6196 -0.7381 14 6 4.2883 1.3998 -2.4130 15 6 5.7319 1.1447 -2.8521 16 6 6.0654 2.0451 -4.0454 17 7 5.0662 1.8226 -5.0993 18 6 5.4485 1.5052 -6.3521 19 8 4.6144 1.2420 -7.1924 20 6 6.9124 1.4773 -6.7089 21 1 7.5095 1.1844 -5.8453 22 6 7.1625 0.5182 -7.8942 23 6 7.7384 1.4303 -9.0000 24 8 7.2573 2.7528 -8.6752 25 6 7.3667 2.8554 -7.2388 26 1 8.3987 3.0522 -6.9483 27 6 6.4465 3.9584 -6.7120 28 6 3.6422 1.9532 -4.7617 29 6 3.3359 1.0537 -3.5599 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6886 1.8464 0.8901 34 1 1.6886 1.8464 -0.8899 35 1 3.8508 0.5685 0.8427 36 1 3.9784 2.1765 0.0902 37 1 5.6206 -1.4289 1.4366 38 1 4.1698 2.4502 -2.1471 39 1 6.4081 1.3691 -2.0272 40 1 5.8449 0.1000 -3.1418 41 1 7.0571 1.7976 -4.4241 42 1 6.0412 3.0892 -3.7334 43 1 7.8848 -0.2500 -7.6181 44 1 6.2273 0.0646 -8.2223 45 1 7.3684 1.1214 -9.9776 46 1 8.8280 1.4078 -8.9813 47 1 6.4006 3.9045 -5.6243 48 1 6.8369 4.9311 -7.0114 49 1 5.4466 3.8254 -7.1248 50 1 3.0351 1.6451 -5.6128 51 1 3.4203 2.9898 -4.5081 52 1 3.4715 0.0099 -3.8429 53 1 2.3066 1.2130 -3.2387 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670999331.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:20 Heat of formation + Delta-G solvation = -115.815589 kcal Electronic energy + Delta-G solvation = -32344.599316 eV Core-core repulsion = 28216.614916 eV Total energy + Delta-G solvation = -4127.984399 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.87609 -39.93084 -38.94634 -38.20751 -36.53289 -34.15331 -33.36165 -32.49493 -32.08596 -31.79365 -29.75020 -27.58019 -27.15668 -26.34804 -24.89562 -24.19550 -23.11609 -22.99002 -22.10354 -21.23822 -19.60696 -18.71146 -17.99770 -17.45625 -17.27058 -17.08575 -16.67716 -16.52884 -16.46930 -15.95960 -15.90415 -15.67280 -15.49905 -15.19771 -15.02676 -14.55699 -14.36864 -13.82897 -13.77198 -13.60108 -13.41819 -13.28751 -13.17297 -13.05535 -12.97247 -12.74847 -12.66064 -12.55174 -12.34886 -12.27059 -12.20939 -12.05297 -11.88431 -11.86996 -11.76901 -11.51092 -11.46592 -11.12614 -10.85003 -10.54368 -10.37922 -10.29241 -9.59408 -8.41544 -7.70477 -5.26063 1.42839 1.47839 1.56703 1.59112 2.03071 2.58735 2.92103 3.22870 3.36925 3.40426 3.56877 3.63674 3.78276 3.90586 4.12791 4.17061 4.21506 4.26086 4.32757 4.37765 4.42520 4.43006 4.47202 4.48753 4.54522 4.61631 4.63939 4.69732 4.74670 4.81525 4.82785 4.84278 4.90759 4.92498 4.93629 4.94177 4.97974 5.04109 5.11964 5.17275 5.22171 5.24281 5.49793 5.65450 5.71537 5.78470 5.88654 5.88997 6.46444 6.53284 6.70448 7.19101 7.32196 8.02232 8.50459 9.25591 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015344 B = 0.003204 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.371083 B = 8737.337149 C = 9428.489030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.053 3.947 4 C 0.141 3.859 5 N -0.584 5.584 6 C -0.217 4.217 7 H 0.033 0.967 8 C -0.020 4.020 9 N -0.913 5.913 10 Si 0.930 3.070 11 H -0.290 1.290 12 H -0.295 1.295 13 H -0.286 1.286 14 C 0.173 3.827 15 C -0.124 4.124 16 C 0.111 3.889 17 N -0.603 5.603 18 C 0.525 3.475 19 O -0.587 6.587 20 C -0.148 4.148 21 H 0.131 0.869 22 C -0.146 4.146 23 C 0.048 3.952 24 O -0.395 6.395 25 C 0.089 3.911 26 H 0.112 0.888 27 C -0.155 4.155 28 C 0.122 3.878 29 C -0.124 4.124 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.045 0.955 34 H 0.039 0.961 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.245 0.755 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.036 0.964 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.062 0.938 45 H 0.093 0.907 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.078 0.922 49 H 0.036 0.964 50 H 0.068 0.932 51 H 0.088 0.912 52 H 0.030 0.970 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.135 11.077 -10.324 15.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C -0.025 4.025 4 C 0.015 3.985 5 N -0.303 5.303 6 C -0.348 4.348 7 H 0.051 0.949 8 C -0.217 4.217 9 N -0.558 5.558 10 Si 0.761 3.239 11 H -0.217 1.217 12 H -0.222 1.222 13 H -0.212 1.212 14 C 0.067 3.933 15 C -0.163 4.163 16 C -0.011 4.011 17 N -0.334 5.334 18 C 0.315 3.685 19 O -0.468 6.468 20 C -0.169 4.169 21 H 0.148 0.852 22 C -0.184 4.184 23 C -0.028 4.028 24 O -0.315 6.315 25 C 0.032 3.968 26 H 0.130 0.870 27 C -0.212 4.212 28 C -0.001 4.001 29 C -0.164 4.164 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.055 0.945 41 H 0.122 0.878 42 H 0.114 0.886 43 H 0.123 0.877 44 H 0.081 0.919 45 H 0.111 0.889 46 H 0.107 0.893 47 H 0.109 0.891 48 H 0.097 0.903 49 H 0.056 0.944 50 H 0.086 0.914 51 H 0.106 0.894 52 H 0.049 0.951 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.796 10.882 -10.732 15.748 hybrid contribution -0.859 -1.623 0.612 1.936 sum 2.936 9.259 -10.121 14.028 Atomic orbital electron populations 1.22789 0.81850 1.02361 0.99992 1.88143 1.19344 1.28998 1.95167 1.23305 0.97120 0.83807 0.98287 1.20980 0.89369 0.96485 0.91672 1.43881 1.75591 1.02098 1.08736 1.18568 1.34222 0.83315 0.98676 0.94904 1.25325 0.97523 0.99269 0.99574 1.70049 1.35956 1.36226 1.13580 0.85872 0.77706 0.84085 0.76210 1.21721 1.22159 1.21209 1.20524 0.92112 0.93873 0.86837 1.22100 0.98430 0.98907 0.96911 1.22071 0.91852 1.00606 0.86569 1.48213 1.07716 1.68387 1.09121 1.20685 0.91631 0.74796 0.81410 1.90635 1.55184 1.51098 1.49883 1.22986 0.92927 0.99246 1.01780 0.85166 1.22984 1.02674 0.98650 0.94082 1.23526 0.99503 0.80999 0.98778 1.89135 1.86419 1.33775 1.22186 1.23046 1.00732 0.92298 0.80771 0.87020 1.22005 0.98453 0.98602 1.02167 1.21530 0.81423 1.00172 0.97010 1.22165 1.00071 0.98450 0.95738 0.94023 0.90392 0.93437 0.93674 0.94298 0.91714 0.92374 0.94516 0.91185 0.91784 0.94484 0.87765 0.88566 0.87702 0.91885 0.88872 0.89345 0.89133 0.90275 0.94441 0.91369 0.89359 0.95118 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.01 113.37 1.25 2.09 16 2 O -0.40 -16.94 10.18 -148.98 -1.52 -18.46 16 3 C 0.05 2.00 6.28 71.98 0.45 2.45 16 4 C 0.14 6.09 5.70 86.38 0.49 6.58 16 5 N -0.58 -26.28 2.35 -677.90 -1.59 -27.87 16 6 C -0.22 -11.40 7.67 84.03 0.64 -10.75 16 7 H 0.03 1.85 6.98 -2.91 -0.02 1.83 16 8 C -0.02 -1.10 4.94 84.86 0.42 -0.68 16 9 N -0.91 -51.36 11.50 21.65 0.25 -51.11 16 10 Si 0.93 46.05 29.61 68.60 2.03 48.08 16 11 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 12 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 13 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 14 C 0.17 6.19 2.59 45.02 0.12 6.31 16 15 C -0.12 -4.09 5.27 30.66 0.16 -3.93 16 16 C 0.11 2.51 4.98 86.35 0.43 2.95 16 17 N -0.60 -16.32 2.55 -818.95 -2.09 -18.40 16 18 C 0.53 15.44 4.88 87.66 0.43 15.87 16 19 O -0.59 -22.30 15.07 -3.05 -0.05 -22.35 16 20 C -0.15 -3.18 2.77 -10.52 -0.03 -3.21 16 21 H 0.13 2.18 5.92 -2.39 -0.01 2.17 16 22 C -0.15 -3.05 6.61 31.61 0.21 -2.84 16 23 C 0.05 0.89 7.63 72.48 0.55 1.44 16 24 O -0.40 -9.50 11.34 -148.98 -1.69 -11.19 16 25 C 0.09 1.69 3.83 31.10 0.12 1.81 16 26 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 27 C -0.16 -2.96 8.49 71.98 0.61 -2.34 16 28 C 0.12 3.52 6.44 86.36 0.56 4.08 16 29 C -0.12 -4.32 5.34 30.67 0.16 -4.16 16 30 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.06 3.35 5.53 -2.39 -0.01 3.34 16 36 H 0.06 2.22 7.90 -2.39 -0.02 2.20 16 37 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 38 H 0.07 2.20 7.78 -2.39 -0.02 2.18 16 39 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.04 1.48 7.66 -2.39 -0.02 1.46 16 41 H 0.10 1.84 5.32 -2.39 -0.01 1.83 16 42 H 0.10 1.69 7.55 -2.39 -0.02 1.67 16 43 H 0.10 1.65 8.14 -2.39 -0.02 1.64 16 44 H 0.06 1.72 6.83 -2.39 -0.02 1.71 16 45 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.09 1.45 5.62 -2.38 -0.01 1.43 16 48 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.04 0.94 7.32 -2.39 -0.02 0.93 16 50 H 0.07 2.22 7.00 -2.39 -0.02 2.20 16 51 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 52 H 0.03 1.28 7.13 -2.39 -0.02 1.26 16 53 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -71.39 401.04 2.81 -68.58 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.88 Total: 17.07 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: 6.58 Total: 15.66 kcal Atomic # 7 Polarization: -93.96 SS G_CDS: -3.43 Total: -97.39 kcal Atomic # 8 Polarization: -48.74 SS G_CDS: -3.25 Total: -52.00 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -71.39 2.81 -68.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670999331.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.235 kcal (2) G-P(sol) polarization free energy of solvation -71.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds