Wall clock time and date at job start Tue Mar 31 2020 23:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.56841 * 2 1 4 4 C 1.54479 * 110.51204 * 237.32138 * 2 1 3 5 5 O 1.44433 * 104.80518 * 217.37935 * 4 2 1 6 6 C 1.44422 * 105.27452 * 40.51075 * 5 4 2 7 7 H 1.09001 * 110.37394 * 78.31441 * 6 5 4 8 8 C 1.50693 * 110.37445 * 200.65937 * 6 5 4 9 9 O 1.21279 * 119.99871 * 0.37739 * 8 6 5 10 10 N 1.34776 * 120.00462 * 180.38329 * 8 6 5 11 11 C 1.46925 * 120.62587 * 359.71683 * 10 8 6 12 12 C 1.53622 * 108.54535 * 126.37252 * 11 10 8 13 13 C 1.53050 * 109.24274 * 54.84934 * 12 11 10 14 14 O 1.42894 * 109.44715 * 178.49812 * 13 12 11 15 15 C 1.42901 * 114.00421 * 270.06204 * 14 13 12 16 16 C 1.53000 * 109.47212 * 180.02562 * 15 14 13 17 17 C 1.52998 * 109.46893 * 180.02562 * 16 15 14 18 18 N 1.46508 * 109.46960 * 179.97438 * 17 16 15 19 19 C 1.36937 * 119.99671 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00114 * 359.97438 * 19 18 17 21 21 C 1.38820 * 119.99469 * 179.97438 * 19 18 17 22 22 N 1.31616 * 119.99829 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99650 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47033 * 90.00087 * 23 21 19 25 25 H 1.48500 * 109.47092 * 209.99910 * 23 21 19 26 26 H 1.48499 * 109.47094 * 330.00076 * 23 21 19 27 27 C 1.53034 * 109.53953 * 298.51826 * 13 12 11 28 28 C 1.46920 * 120.63426 * 179.97438 * 10 8 6 29 29 C 1.54481 * 104.80535 * 319.49061 * 6 5 4 30 30 H 1.09006 * 109.47067 * 297.32061 * 1 2 3 31 31 H 1.08996 * 109.46731 * 57.32002 * 1 2 3 32 32 H 1.08997 * 109.47347 * 177.31868 * 1 2 3 33 33 H 1.08997 * 110.37024 * 336.20929 * 4 2 1 34 34 H 1.08995 * 110.37315 * 98.54560 * 4 2 1 35 35 H 1.09005 * 109.58300 * 246.20003 * 11 10 8 36 36 H 1.08995 * 109.59077 * 6.62655 * 11 10 8 37 37 H 1.09006 * 109.63324 * 294.86694 * 12 11 10 38 38 H 1.08992 * 109.43681 * 174.72195 * 12 11 10 39 39 H 1.09003 * 109.45237 * 58.53484 * 13 12 11 40 40 H 1.09002 * 109.46883 * 300.00490 * 15 14 13 41 41 H 1.08999 * 109.46701 * 60.00179 * 15 14 13 42 42 H 1.09002 * 109.47091 * 299.99744 * 16 15 14 43 43 H 1.08993 * 109.47363 * 59.99816 * 16 15 14 44 44 H 1.08995 * 109.47202 * 299.99644 * 17 16 15 45 45 H 1.09005 * 109.47248 * 59.99935 * 17 16 15 46 46 H 0.96997 * 119.99685 * 359.97438 * 18 17 16 47 47 H 0.97002 * 119.99769 * 179.97438 * 22 21 19 48 48 H 1.09004 * 109.49580 * 301.41245 * 27 13 12 49 49 H 1.09000 * 109.50013 * 181.31147 * 27 13 12 50 50 H 1.09001 * 109.58950 * 353.37083 * 28 10 8 51 51 H 1.09002 * 109.58954 * 113.79539 * 28 10 8 52 52 H 1.08996 * 110.51163 * 265.33635 * 29 6 5 53 53 H 1.08995 * 110.63589 * 142.67963 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0205 0.0000 4 6 2.0713 -0.7812 -1.2178 5 8 3.2399 -1.4714 -0.7238 6 6 2.8757 -1.9423 0.5920 7 1 2.2562 -2.8360 0.5173 8 6 4.1104 -2.2251 1.4084 9 8 5.2093 -2.0403 0.9297 10 7 3.9936 -2.6835 2.6704 11 6 2.6692 -2.9065 3.2661 12 6 2.6085 -4.3468 3.7969 13 6 3.7769 -4.5801 4.7576 14 8 3.7047 -5.9077 5.2810 15 6 2.9441 -6.0171 6.4858 16 6 2.9353 -7.4740 6.9530 17 6 2.1204 -7.5911 8.2426 18 7 2.1115 -8.9862 8.6896 19 6 1.4394 -9.3353 9.8305 20 1 0.9164 -8.5821 10.4010 21 6 1.4305 -10.6574 10.2537 22 7 2.0676 -11.5753 9.5582 23 14 0.5144 -11.1334 11.8105 24 1 -0.8858 -11.4927 11.4706 25 1 1.1847 -12.2980 12.4428 26 1 0.5160 -9.9881 12.7557 27 6 5.0992 -4.3982 4.0089 28 6 5.1881 -2.9643 3.4784 29 6 2.0714 -0.7815 1.2181 30 1 -0.3633 0.4717 0.9131 31 1 -0.3633 0.5549 -0.8650 32 1 -0.3634 -1.0265 -0.0481 33 1 1.3285 -1.4969 -1.5701 34 1 2.3464 -0.0939 -2.0177 35 1 2.5147 -2.2052 4.0862 36 1 1.8988 -2.7619 2.5088 37 1 2.6768 -5.0472 2.9644 38 1 1.6673 -4.4994 4.3250 39 1 3.7219 -3.8632 5.5769 40 1 3.3932 -5.3912 7.2570 41 1 1.9215 -5.6882 6.3009 42 1 2.4864 -8.1001 6.1819 43 1 3.9580 -7.8024 7.1379 44 1 2.5688 -6.9649 9.0138 45 1 1.0976 -7.2627 8.0572 46 1 2.5810 -9.6627 8.1770 47 1 2.0617 -12.4990 9.8541 48 1 5.1439 -5.0980 3.1744 49 1 5.9307 -4.5873 4.6879 50 1 6.0802 -2.8578 2.8612 51 1 5.2351 -2.2676 4.3155 52 1 2.7219 -0.1472 1.8202 53 1 1.2490 -1.1656 1.8216 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675153440.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:00 Heat of formation + Delta-G solvation = -147.065211 kcal Electronic energy + Delta-G solvation = -29683.709495 eV Core-core repulsion = 25554.370010 eV Total energy + Delta-G solvation = -4129.339485 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.80555 -40.24489 -39.32115 -37.72827 -36.81259 -34.61520 -34.30412 -33.35669 -32.30828 -31.35641 -30.67842 -27.24990 -27.03884 -26.09215 -24.66898 -24.44280 -23.80578 -22.46184 -21.84772 -21.45372 -20.30329 -19.13643 -18.56268 -17.76391 -17.52784 -17.21437 -16.83972 -16.60412 -16.32349 -16.01916 -15.84237 -15.56483 -15.40480 -15.24346 -15.05717 -14.98142 -14.59013 -14.53327 -13.99099 -13.88084 -13.76401 -13.40576 -13.37017 -13.14441 -12.94629 -12.85552 -12.64751 -12.46185 -12.40865 -12.30311 -12.15344 -12.08125 -12.04097 -11.80663 -11.76554 -11.71978 -11.59162 -11.47849 -11.06090 -10.94007 -10.69344 -10.37942 -9.83146 -9.02338 -7.95743 -5.25926 1.40653 1.48178 1.50632 1.59174 1.68548 2.51011 2.66401 2.91884 3.23927 3.38066 3.54113 3.67419 3.75815 3.83871 3.87959 3.95287 3.98473 4.10241 4.11937 4.12532 4.22657 4.27640 4.29455 4.38333 4.43857 4.52294 4.56846 4.60682 4.65406 4.72007 4.72774 4.76795 4.78050 4.80326 4.82471 4.83050 4.86631 4.94700 5.10517 5.11800 5.22972 5.23761 5.33905 5.34500 5.36889 5.42866 5.49185 5.71368 6.23348 6.25679 6.35746 7.01107 7.31901 8.07616 8.30255 9.28095 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021811 B = 0.001582 C = 0.001513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.462346 B =17691.685998 C =18496.181148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 H 0.084 0.916 4 C 0.037 3.963 5 O -0.386 6.386 6 C 0.056 3.944 7 H 0.114 0.886 8 C 0.515 3.485 9 O -0.577 6.577 10 N -0.605 5.605 11 C 0.105 3.895 12 C -0.156 4.156 13 C 0.085 3.915 14 O -0.403 6.403 15 C 0.078 3.922 16 C -0.115 4.115 17 C 0.156 3.844 18 N -0.751 5.751 19 C -0.250 4.250 20 H 0.080 0.920 21 C -0.079 4.079 22 N -0.971 5.971 23 Si 0.979 3.021 24 H -0.285 1.285 25 H -0.296 1.296 26 H -0.267 1.267 27 C -0.126 4.126 28 C 0.118 3.882 29 C -0.137 4.137 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.061 0.939 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.027 0.973 45 H 0.029 0.971 46 H 0.372 0.628 47 H 0.252 0.748 48 H 0.055 0.945 49 H 0.087 0.913 50 H 0.078 0.922 51 H 0.095 0.905 52 H 0.074 0.926 53 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.721 29.249 -19.313 35.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.140 4.140 3 H 0.103 0.897 4 C -0.039 4.039 5 O -0.305 6.305 6 C -0.005 4.005 7 H 0.131 0.869 8 C 0.303 3.697 9 O -0.456 6.456 10 N -0.339 5.339 11 C -0.017 4.017 12 C -0.194 4.194 13 C 0.028 3.972 14 O -0.323 6.323 15 C 0.001 3.999 16 C -0.153 4.153 17 C 0.029 3.971 18 N -0.394 5.394 19 C -0.381 4.381 20 H 0.098 0.902 21 C -0.271 4.271 22 N -0.622 5.622 23 Si 0.807 3.193 24 H -0.212 1.212 25 H -0.222 1.222 26 H -0.191 1.191 27 C -0.165 4.165 28 C -0.004 4.004 29 C -0.174 4.174 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.044 0.956 45 H 0.047 0.953 46 H 0.204 0.796 47 H 0.060 0.940 48 H 0.074 0.926 49 H 0.105 0.895 50 H 0.097 0.903 51 H 0.113 0.887 52 H 0.093 0.907 53 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.953 29.225 -19.612 35.319 hybrid contribution -0.031 -1.009 0.612 1.180 sum -2.984 28.216 -19.000 34.148 Atomic orbital electron populations 1.21819 0.91920 1.02978 1.03134 1.22526 0.98050 1.00125 0.93327 0.89738 1.23856 0.87100 0.95553 0.97385 1.89253 1.37282 1.74390 1.29557 1.23006 0.92799 1.00373 0.84277 0.86856 1.20802 0.90661 0.76296 0.81913 1.90694 1.29883 1.53637 1.71339 1.48171 1.08843 1.64432 1.12468 1.22252 0.83021 0.96192 1.00186 1.22514 0.99846 0.97061 1.00013 1.22203 0.94918 0.84232 0.95871 1.87921 1.73592 1.29382 1.41402 1.22356 0.95850 0.95680 0.85999 1.21490 1.00305 0.96771 0.96721 1.20675 0.97162 0.85614 0.93625 1.42620 1.62890 1.05101 1.28738 1.19698 1.24220 0.93141 1.01052 0.90183 1.25666 1.02549 0.96059 1.02815 1.69837 1.48985 1.01267 1.42116 0.85065 0.77681 0.77459 0.79086 1.21226 1.22244 1.19144 1.21923 0.97849 0.96441 1.00270 1.21583 0.88216 0.95496 0.95122 1.23160 1.00194 0.95332 0.98737 0.91131 0.91678 0.91541 0.90326 0.88267 0.87949 0.87105 0.91994 0.88642 0.89970 0.91943 0.91515 0.92390 0.92566 0.95553 0.95324 0.79603 0.93972 0.92623 0.89492 0.90318 0.88715 0.90747 0.86177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.43 8.97 71.98 0.65 0.21 16 2 C -0.12 -0.87 3.72 -9.78 -0.04 -0.91 16 3 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 4 C 0.04 0.41 7.18 72.48 0.52 0.93 16 5 O -0.39 -8.00 10.91 -130.60 -1.42 -9.42 16 6 C 0.06 0.83 2.76 30.35 0.08 0.91 16 7 H 0.11 1.19 7.59 -2.39 -0.02 1.18 16 8 C 0.51 10.80 7.02 87.65 0.62 11.41 16 9 O -0.58 -18.12 15.96 15.35 0.25 -17.87 16 10 N -0.61 -9.12 2.97 -818.17 -2.43 -11.54 16 11 C 0.10 0.84 5.75 86.51 0.50 1.33 16 12 C -0.16 -1.94 5.71 30.82 0.18 -1.76 16 13 C 0.09 1.40 2.57 30.62 0.08 1.48 16 14 O -0.40 -9.80 9.99 -148.98 -1.49 -11.28 16 15 C 0.08 1.84 5.75 71.98 0.41 2.25 16 16 C -0.11 -3.73 5.70 30.59 0.17 -3.56 16 17 C 0.16 6.07 6.26 86.38 0.54 6.61 16 18 N -0.75 -38.92 5.60 -343.43 -1.92 -40.85 16 19 C -0.25 -14.04 9.99 84.04 0.84 -13.20 16 20 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 21 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 22 N -0.97 -60.28 13.06 21.65 0.28 -60.00 16 23 Si 0.98 45.95 29.55 68.60 2.03 47.98 16 24 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 25 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 27 C -0.13 -2.18 5.73 30.66 0.18 -2.01 16 28 C 0.12 1.86 6.43 86.35 0.55 2.41 16 29 C -0.14 -1.06 5.17 31.61 0.16 -0.89 16 30 H 0.07 0.13 8.14 -2.38 -0.02 0.11 16 31 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.07 0.15 8.08 -2.39 -0.02 0.13 16 33 H 0.08 0.62 7.83 -2.39 -0.02 0.60 16 34 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.10 0.38 8.14 -2.38 -0.02 0.36 16 36 H 0.11 0.42 4.46 -2.39 -0.01 0.41 16 37 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.10 0.98 7.84 -2.39 -0.02 0.96 16 39 H 0.08 1.05 7.79 -2.39 -0.02 1.03 16 40 H 0.06 1.31 8.08 -2.39 -0.02 1.29 16 41 H 0.07 1.33 7.84 -2.39 -0.02 1.31 16 42 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 46 H 0.37 20.74 7.67 -92.71 -0.71 20.02 16 47 H 0.25 15.08 8.31 -92.71 -0.77 14.30 16 48 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 49 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.08 1.59 7.01 -2.39 -0.02 1.58 16 51 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 52 H 0.07 0.71 7.86 -2.39 -0.02 0.69 16 53 H 0.12 0.20 6.43 -2.39 -0.02 0.18 16 Total: -1.00 -79.23 414.03 1.37 -77.85 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 0.17 Total: 23.99 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 5.91 Total: 1.14 kcal Atomic # 7 Polarization: -108.32 SS G_CDS: -4.07 Total: -112.39 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -2.67 Total: -38.58 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -79.23 1.37 -77.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675153440.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.212 kcal (2) G-P(sol) polarization free energy of solvation -79.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds