Wall clock time and date at job start Tue Mar 31 2020 23:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.80191 * 2 1 4 4 C 1.54998 * 110.90431 * 123.62648 * 2 1 3 5 5 O 1.44478 * 103.44508 * 155.23763 * 4 2 1 6 6 C 1.43746 * 106.98554 * 319.94809 * 5 4 2 7 7 H 1.09002 * 109.87733 * 267.08885 * 6 5 4 8 8 C 1.50700 * 110.00566 * 146.00839 * 6 5 4 9 9 O 1.21285 * 119.99811 * 357.09283 * 8 6 5 10 10 N 1.34777 * 120.00183 * 177.09099 * 8 6 5 11 11 C 1.46930 * 120.62746 * 359.72257 * 10 8 6 12 12 C 1.52766 * 109.00458 * 233.58439 * 11 10 8 13 13 C 1.53040 * 109.37953 * 305.58704 * 12 11 10 14 14 O 1.42904 * 109.44842 * 181.25570 * 13 12 11 15 15 C 1.42903 * 114.00157 * 89.93725 * 14 13 12 16 16 C 1.52990 * 109.47302 * 180.02562 * 15 14 13 17 17 C 1.52999 * 109.47490 * 180.02562 * 16 15 14 18 18 N 1.46496 * 109.47875 * 179.97438 * 17 16 15 19 19 C 1.36932 * 120.00556 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99832 * 359.97438 * 19 18 17 21 21 C 1.38807 * 120.00239 * 180.02562 * 19 18 17 22 22 N 1.31617 * 120.00546 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99953 * 359.97438 * 21 19 18 24 24 H 1.48490 * 109.47409 * 90.00213 * 23 21 19 25 25 H 1.48506 * 109.47147 * 210.00317 * 23 21 19 26 26 H 1.48501 * 109.47183 * 329.99772 * 23 21 19 27 27 C 1.53034 * 109.53984 * 61.24428 * 13 12 11 28 28 C 1.46926 * 120.63088 * 179.97438 * 10 8 6 29 29 C 1.54100 * 107.29659 * 26.51171 * 6 5 4 30 30 H 1.09000 * 109.46898 * 180.70050 * 1 2 3 31 31 H 1.08994 * 109.47314 * 300.69748 * 1 2 3 32 32 H 1.09001 * 109.46790 * 60.70815 * 1 2 3 33 33 H 1.08997 * 110.61738 * 273.75903 * 4 2 1 34 34 H 1.08997 * 110.62197 * 36.76039 * 4 2 1 35 35 H 1.09004 * 109.58587 * 353.41352 * 11 10 8 36 36 H 1.09001 * 109.58576 * 113.84516 * 11 10 8 37 37 H 1.08999 * 109.56220 * 185.55685 * 12 11 10 38 38 H 1.08998 * 109.39156 * 65.51349 * 12 11 10 39 39 H 1.08994 * 109.46164 * 301.21872 * 13 12 11 40 40 H 1.09000 * 109.47148 * 300.00382 * 15 14 13 41 41 H 1.08998 * 109.47044 * 59.99795 * 15 14 13 42 42 H 1.09000 * 109.47076 * 300.00114 * 16 15 14 43 43 H 1.08998 * 109.47494 * 59.99757 * 16 15 14 44 44 H 1.09000 * 109.47031 * 300.00113 * 17 16 15 45 45 H 1.08998 * 109.46973 * 59.99410 * 17 16 15 46 46 H 0.97009 * 119.99663 * 359.97438 * 18 17 16 47 47 H 0.96997 * 120.01123 * 179.97438 * 22 21 19 48 48 H 1.09006 * 109.50005 * 178.68293 * 27 13 12 49 49 H 1.09000 * 109.52828 * 58.60069 * 27 13 12 50 50 H 1.08993 * 109.58554 * 246.15763 * 28 10 8 51 51 H 1.08999 * 109.58254 * 6.44268 * 28 10 8 52 52 H 1.08991 * 110.48958 * 239.30057 * 29 6 5 53 53 H 1.08998 * 110.49031 * 116.64700 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0190 0.0000 4 6 2.0831 -0.8018 1.2057 5 8 3.3949 -1.2136 0.7619 6 6 3.2724 -1.5873 -0.6207 7 1 3.0837 -2.6579 -0.6999 8 6 4.5346 -1.2334 -1.3642 9 8 5.4373 -0.6629 -0.7892 10 7 4.6602 -1.5507 -2.6680 11 6 3.5777 -2.2471 -3.3765 12 6 4.1440 -3.5004 -4.0416 13 6 5.3292 -3.1129 -4.9289 14 8 5.8419 -4.2802 -5.5746 15 6 5.2354 -4.5593 -6.8381 16 6 5.8574 -5.8235 -7.4343 17 6 5.2086 -6.1219 -8.7873 18 7 5.8046 -7.3321 -9.3585 19 6 5.3795 -7.7964 -10.5746 20 1 4.6045 -7.2707 -11.1124 21 6 5.9439 -8.9434 -11.1155 22 7 5.5350 -9.3900 -12.2842 23 14 7.2839 -9.8532 -10.1849 24 1 6.6668 -10.8737 -9.3003 25 1 8.1924 -10.5205 -11.1518 26 1 8.0581 -8.8886 -9.3631 27 6 6.4272 -2.4820 -4.0696 28 6 5.8843 -1.2117 -3.4064 29 6 2.0825 -0.8009 -1.2042 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3633 0.5246 0.8836 32 1 -0.3633 0.5028 -0.8963 33 1 2.1575 -0.1660 2.0878 34 1 1.4566 -1.6703 1.4090 35 1 2.8002 -2.5312 -2.6673 36 1 3.1579 -1.5904 -4.1385 37 1 3.3722 -3.9709 -4.6507 38 1 4.4774 -4.1984 -3.2737 39 1 5.0004 -2.3965 -5.6816 40 1 4.1647 -4.7112 -6.7015 41 1 5.3999 -3.7197 -7.5134 42 1 6.9282 -5.6719 -7.5708 43 1 5.6926 -6.6629 -6.7588 44 1 4.1377 -6.2733 -8.6512 45 1 5.3738 -5.2824 -9.4626 46 1 6.5010 -7.8042 -8.8756 47 1 5.9296 -10.1913 -12.6624 48 1 7.2804 -2.2276 -4.6986 49 1 6.7397 -3.1888 -3.3010 50 1 5.6561 -0.4690 -4.1708 51 1 6.6274 -0.8104 -2.7173 52 1 1.3250 -1.4842 -1.5877 53 1 2.4204 -0.1247 -1.9894 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675153441.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:03 Heat of formation + Delta-G solvation = -144.884441 kcal Electronic energy + Delta-G solvation = -29729.810600 eV Core-core repulsion = 25600.565680 eV Total energy + Delta-G solvation = -4129.244919 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.83032 -40.24120 -39.29283 -37.77276 -36.94316 -34.62781 -34.33942 -33.45273 -32.42531 -31.72600 -30.75844 -27.32795 -27.12843 -26.01094 -24.60647 -24.19216 -23.65678 -22.57516 -21.86283 -21.59041 -20.32360 -19.62272 -18.49868 -17.81196 -17.54552 -17.18993 -16.86116 -16.61738 -16.39317 -16.07350 -15.80549 -15.64430 -15.42413 -15.41225 -14.89993 -14.82558 -14.73624 -14.59893 -14.06267 -13.83683 -13.77879 -13.72160 -13.36918 -13.14128 -12.96260 -12.94444 -12.69730 -12.50528 -12.46786 -12.34649 -12.20713 -12.06328 -11.97634 -11.81751 -11.79731 -11.78645 -11.66365 -11.48755 -11.13394 -10.98538 -10.56200 -10.37102 -9.82936 -9.31987 -8.04235 -5.38361 1.38467 1.41051 1.41755 1.48617 1.71000 2.47572 2.57736 2.87714 3.25136 3.27280 3.50670 3.64583 3.68597 3.77341 3.80922 3.87531 3.98881 4.08691 4.09631 4.16957 4.24858 4.26321 4.28195 4.34722 4.42677 4.51447 4.53893 4.61176 4.64109 4.70892 4.73029 4.73765 4.76103 4.77960 4.81297 4.82411 4.88297 4.94349 5.07871 5.10849 5.21890 5.22557 5.30700 5.31748 5.36013 5.43004 5.73922 5.75388 6.19632 6.24570 6.33726 7.02557 7.06178 7.82561 8.00841 9.16928 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023124 B = 0.001625 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.591330 B =17228.136146 C =17751.832714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.124 4.124 3 H 0.075 0.925 4 C 0.041 3.959 5 O -0.388 6.388 6 C 0.059 3.941 7 H 0.113 0.887 8 C 0.509 3.491 9 O -0.577 6.577 10 N -0.606 5.606 11 C 0.106 3.894 12 C -0.156 4.156 13 C 0.086 3.914 14 O -0.401 6.401 15 C 0.075 3.925 16 C -0.118 4.118 17 C 0.157 3.843 18 N -0.762 5.762 19 C -0.240 4.240 20 H 0.060 0.940 21 C -0.063 4.063 22 N -0.982 5.982 23 Si 0.956 3.044 24 H -0.277 1.277 25 H -0.294 1.294 26 H -0.254 1.254 27 C -0.126 4.126 28 C 0.117 3.883 29 C -0.137 4.137 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.033 0.967 45 H 0.029 0.971 46 H 0.366 0.634 47 H 0.259 0.741 48 H 0.087 0.913 49 H 0.056 0.944 50 H 0.093 0.907 51 H 0.078 0.922 52 H 0.121 0.879 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.664 22.781 27.878 37.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.142 4.142 3 H 0.093 0.907 4 C -0.035 4.035 5 O -0.307 6.307 6 C -0.002 4.002 7 H 0.131 0.869 8 C 0.298 3.702 9 O -0.456 6.456 10 N -0.340 5.340 11 C -0.016 4.016 12 C -0.195 4.195 13 C 0.029 3.971 14 O -0.321 6.321 15 C -0.002 4.002 16 C -0.156 4.156 17 C 0.031 3.969 18 N -0.408 5.408 19 C -0.370 4.370 20 H 0.078 0.922 21 C -0.255 4.255 22 N -0.632 5.632 23 Si 0.783 3.217 24 H -0.203 1.203 25 H -0.221 1.221 26 H -0.178 1.178 27 C -0.164 4.164 28 C -0.005 4.005 29 C -0.175 4.175 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.128 0.872 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.051 0.949 45 H 0.047 0.953 46 H 0.199 0.801 47 H 0.067 0.933 48 H 0.105 0.895 49 H 0.074 0.926 50 H 0.111 0.889 51 H 0.096 0.904 52 H 0.139 0.861 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.993 22.989 28.207 38.013 hybrid contribution 0.887 -0.838 -0.159 1.230 sum -10.107 22.151 28.048 37.142 Atomic orbital electron populations 1.21706 0.91598 1.03211 1.02973 1.22723 0.98176 0.99551 0.93799 0.90698 1.23989 0.82680 0.98790 0.98042 1.88997 1.31644 1.86629 1.23386 1.22796 0.92804 1.01426 0.83176 0.86933 1.21085 0.89032 0.78136 0.81961 1.90688 1.43263 1.43560 1.68106 1.48200 1.18688 1.58040 1.09120 1.22018 0.88724 0.93106 0.97706 1.22364 0.98805 0.98293 1.00023 1.22184 0.93615 0.87069 0.94274 1.87907 1.63836 1.46284 1.34072 1.22360 0.97040 0.96534 0.84245 1.21534 1.00631 0.97999 0.95467 1.20657 0.95945 0.87786 0.92518 1.42746 1.46288 1.30588 1.21184 1.19068 1.16162 1.06599 0.95210 0.92242 1.25520 1.02649 0.99440 0.97850 1.69874 1.47458 1.25967 1.19929 0.85400 0.79417 0.78907 0.78018 1.20282 1.22069 1.17838 1.21927 0.98710 0.96662 0.99118 1.21594 0.86679 0.96478 0.95775 1.23155 0.95781 0.99734 0.98832 0.91093 0.91738 0.91387 0.88355 0.89826 0.87229 0.88147 0.88569 0.91951 0.90075 0.91574 0.92034 0.91845 0.91516 0.94943 0.95297 0.80130 0.93251 0.89464 0.92554 0.88856 0.90386 0.86101 0.89924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.43 9.17 71.98 0.66 0.23 16 2 C -0.12 -0.95 3.72 -9.49 -0.04 -0.98 16 3 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 4 C 0.04 0.44 7.18 72.67 0.52 0.96 16 5 O -0.39 -7.78 10.75 -130.33 -1.40 -9.18 16 6 C 0.06 0.83 2.95 30.22 0.09 0.92 16 7 H 0.11 1.12 7.49 -2.39 -0.02 1.10 16 8 C 0.51 10.33 6.89 87.66 0.60 10.93 16 9 O -0.58 -17.74 15.95 15.60 0.25 -17.49 16 10 N -0.61 -8.72 2.98 -819.63 -2.44 -11.16 16 11 C 0.11 0.78 5.59 86.22 0.48 1.27 16 12 C -0.16 -1.78 5.68 30.53 0.17 -1.61 16 13 C 0.09 1.30 2.57 30.62 0.08 1.38 16 14 O -0.40 -8.85 9.99 -148.98 -1.49 -10.34 16 15 C 0.07 1.60 5.75 71.98 0.41 2.02 16 16 C -0.12 -3.38 5.70 30.59 0.17 -3.20 16 17 C 0.16 5.71 6.26 86.38 0.54 6.25 16 18 N -0.76 -35.88 5.41 -343.47 -1.86 -37.73 16 19 C -0.24 -13.77 10.47 84.03 0.88 -12.89 16 20 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 21 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 22 N -0.98 -62.99 13.97 21.65 0.30 -62.68 16 23 Si 0.96 45.72 27.74 68.60 1.90 47.63 16 24 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 25 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 26 H -0.25 -11.05 6.52 99.48 0.65 -10.40 16 27 C -0.13 -2.01 5.73 30.68 0.18 -1.84 16 28 C 0.12 1.75 6.44 86.38 0.56 2.31 16 29 C -0.14 -0.94 4.67 31.59 0.15 -0.80 16 30 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 0.58 8.04 -2.39 -0.02 0.56 16 35 H 0.11 0.37 4.85 -2.39 -0.01 0.35 16 36 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.10 0.89 7.84 -2.39 -0.02 0.87 16 38 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.08 0.96 7.79 -2.39 -0.02 0.94 16 40 H 0.07 1.20 7.84 -2.39 -0.02 1.18 16 41 H 0.06 1.19 8.08 -2.39 -0.02 1.17 16 42 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.37 16.51 5.53 -92.70 -0.51 16.00 16 47 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 48 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 49 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 50 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.08 1.53 7.00 -2.39 -0.02 1.51 16 52 H 0.12 0.10 7.44 -2.39 -0.02 0.08 16 53 H 0.08 0.61 7.52 -2.39 -0.02 0.59 16 Total: -1.00 -81.12 411.55 1.50 -79.62 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.31 Total: 19.66 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 5.93 Total: 1.68 kcal Atomic # 7 Polarization: -107.58 SS G_CDS: -3.99 Total: -111.57 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: -2.64 Total: -37.01 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.90 Total: 47.63 kcal Total: -81.12 1.50 -79.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675153441.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.269 kcal (2) G-P(sol) polarization free energy of solvation -81.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds