Wall clock time and date at job start Tue Mar 31 2020 23:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09011 * 110.75182 * 2 1 4 4 C 1.54387 * 110.85237 * 123.47154 * 2 1 3 5 5 O 1.43229 * 107.58962 * 139.54797 * 4 2 1 6 6 C 1.43653 * 109.97521 * 1.71496 * 5 4 2 7 7 H 1.09002 * 110.30949 * 94.58362 * 6 5 4 8 8 C 1.50697 * 110.30950 * 216.65523 * 6 5 4 9 9 O 1.21282 * 119.99932 * 2.21023 * 8 6 5 10 10 N 1.34772 * 119.99791 * 182.20437 * 8 6 5 11 11 C 1.46930 * 120.63049 * 179.97438 * 10 8 6 12 12 C 1.53188 * 108.77799 * 233.58831 * 11 10 8 13 13 C 1.53047 * 109.31180 * 305.36812 * 12 11 10 14 14 O 1.42902 * 109.46004 * 181.38446 * 13 12 11 15 15 C 1.42895 * 114.00169 * 149.99587 * 14 13 12 16 16 C 1.53000 * 109.47302 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.46990 * 179.97438 * 16 15 14 18 18 N 1.46499 * 109.46708 * 180.02562 * 17 16 15 19 19 C 1.36935 * 119.99926 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99877 * 359.97438 * 19 18 17 21 21 C 1.38811 * 120.00369 * 179.73019 * 19 18 17 22 22 N 1.31617 * 119.99773 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47050 * 59.99408 * 23 21 19 25 25 H 1.48496 * 109.47289 * 179.97438 * 23 21 19 26 26 H 1.48508 * 109.46855 * 299.99389 * 23 21 19 27 27 C 1.53036 * 109.53858 * 61.36164 * 13 12 11 28 28 C 1.46923 * 120.63184 * 359.97438 * 10 8 6 29 29 C 1.54949 * 105.21736 * 335.62119 * 6 5 4 30 30 H 1.08994 * 109.47300 * 297.97959 * 1 2 3 31 31 H 1.09000 * 109.47112 * 57.98450 * 1 2 3 32 32 H 1.09000 * 109.46916 * 177.97920 * 1 2 3 33 33 H 1.08994 * 109.82416 * 20.03480 * 4 2 1 34 34 H 1.09001 * 109.90365 * 259.10720 * 4 2 1 35 35 H 1.08999 * 109.58230 * 113.80088 * 11 10 8 36 36 H 1.08997 * 109.58585 * 353.38019 * 11 10 8 37 37 H 1.08993 * 109.50140 * 185.41645 * 12 11 10 38 38 H 1.09003 * 109.52300 * 65.32884 * 12 11 10 39 39 H 1.09003 * 109.45535 * 301.35630 * 13 12 11 40 40 H 1.09005 * 109.47122 * 59.99813 * 15 14 13 41 41 H 1.08999 * 109.47340 * 300.00737 * 15 14 13 42 42 H 1.09000 * 109.46641 * 60.00183 * 16 15 14 43 43 H 1.08994 * 109.47288 * 300.00484 * 16 15 14 44 44 H 1.08998 * 109.46692 * 60.00542 * 17 16 15 45 45 H 1.08994 * 109.47584 * 300.00406 * 17 16 15 46 46 H 0.97005 * 120.00261 * 0.02562 * 18 17 16 47 47 H 0.97004 * 120.00382 * 180.02562 * 22 21 19 48 48 H 1.09007 * 109.49761 * 58.58866 * 27 13 12 49 49 H 1.09004 * 109.49860 * 178.68164 * 27 13 12 50 50 H 1.08998 * 109.59225 * 246.20189 * 28 10 8 51 51 H 1.09003 * 109.58942 * 6.63089 * 28 10 8 52 52 H 1.09001 * 111.12006 * 154.31378 * 29 6 5 53 53 H 1.08993 * 111.12350 * 278.47276 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9162 1.0194 0.0000 4 6 2.0795 -0.7957 1.2035 5 8 3.2045 -1.5538 0.7438 6 6 3.4465 -1.2795 -0.6453 7 1 4.1949 -0.4940 -0.7511 8 6 3.8982 -2.5301 -1.3545 9 8 3.9694 -3.5785 -0.7489 10 7 4.2231 -2.4835 -2.6616 11 6 4.6657 -3.6943 -3.3666 12 6 6.0085 -3.4065 -4.0455 13 6 5.8689 -2.1733 -4.9410 14 8 7.1110 -1.9209 -5.6008 15 6 6.9736 -1.3041 -6.8824 16 6 8.3589 -1.0818 -7.4927 17 6 8.2117 -0.4218 -8.8652 18 7 9.5382 -0.2096 -9.4497 19 6 9.6575 0.3719 -10.6837 20 1 8.7737 0.6736 -11.2262 21 6 10.9146 0.5782 -11.2352 22 7 11.9918 0.2153 -10.5717 23 14 11.0774 1.3720 -12.9182 24 1 10.4726 2.7279 -12.8866 25 1 12.5141 1.4796 -13.2779 26 1 10.3749 0.5400 -13.9280 27 6 5.4896 -0.9611 -4.0873 28 6 4.1413 -1.2211 -3.4088 29 6 2.0840 -0.8036 -1.2094 30 1 -0.3633 0.4821 0.9075 31 1 -0.3633 0.5448 -0.8714 32 1 -0.3633 -1.0270 -0.0362 33 1 1.3109 -1.4683 1.5839 34 1 2.3926 -0.1094 1.9903 35 1 3.9271 -3.9692 -4.1195 36 1 4.7843 -4.5097 -2.6532 37 1 6.3014 -4.2643 -4.6507 38 1 6.7681 -3.2205 -3.2861 39 1 5.0920 -2.3508 -5.6848 40 1 6.4676 -0.3449 -6.7717 41 1 6.3877 -1.9504 -7.5359 42 1 8.8652 -2.0407 -7.6034 43 1 8.9444 -0.4352 -6.8391 44 1 7.7052 0.5370 -8.7548 45 1 7.6264 -1.0688 -9.5185 46 1 10.3319 -0.4809 -8.9626 47 1 12.8703 0.3597 -10.9569 48 1 6.2537 -0.7980 -3.3272 49 1 5.4132 -0.0784 -4.7223 50 1 3.3599 -1.2940 -4.1652 51 1 3.9140 -0.4047 -2.7232 52 1 2.2217 -0.1619 -2.0796 53 1 1.4396 -1.6502 -1.4459 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675153442.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:07 Heat of formation + Delta-G solvation = -147.363217 kcal Electronic energy + Delta-G solvation = -29634.575834 eV Core-core repulsion = 25505.223427 eV Total energy + Delta-G solvation = -4129.352407 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.79452 -40.25203 -39.31018 -37.72408 -36.80900 -34.63279 -34.30965 -33.36859 -32.33546 -31.37234 -30.75860 -27.35407 -27.05999 -26.07538 -24.59405 -24.39979 -23.73898 -22.45120 -21.94761 -21.49639 -20.05233 -19.13478 -18.84798 -17.74280 -17.60299 -17.14482 -16.83229 -16.62401 -16.46048 -16.21212 -15.69848 -15.50869 -15.32521 -15.23632 -15.03762 -14.93310 -14.59149 -14.39246 -14.04686 -13.88369 -13.74376 -13.46091 -13.36722 -13.23943 -12.95828 -12.82303 -12.68955 -12.46284 -12.42932 -12.27890 -12.15454 -12.09510 -12.04842 -11.96995 -11.80413 -11.72943 -11.64075 -11.47745 -11.01616 -10.92643 -10.50231 -10.35349 -9.81983 -9.02119 -7.95254 -5.25594 1.41377 1.48294 1.52112 1.58373 1.70485 2.51402 2.66731 2.83554 3.20869 3.38331 3.46196 3.67048 3.75447 3.81530 3.92206 3.96375 4.01678 4.03470 4.10391 4.12804 4.22622 4.27840 4.29903 4.38393 4.42934 4.52128 4.57377 4.60897 4.68014 4.71982 4.72410 4.73473 4.77476 4.80960 4.82557 4.82855 4.90234 4.94749 5.03120 5.12062 5.20415 5.23668 5.34031 5.34683 5.38113 5.43040 5.49044 5.86416 6.25853 6.26000 6.35943 7.03169 7.32150 8.07910 8.30573 9.28319 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023671 B = 0.001550 C = 0.001495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.593232 B =18054.568584 C =18718.658973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 H 0.109 0.891 4 C 0.042 3.958 5 O -0.393 6.393 6 C 0.061 3.939 7 H 0.116 0.884 8 C 0.509 3.491 9 O -0.578 6.578 10 N -0.605 5.605 11 C 0.118 3.882 12 C -0.127 4.127 13 C 0.085 3.915 14 O -0.403 6.403 15 C 0.078 3.922 16 C -0.115 4.115 17 C 0.156 3.844 18 N -0.751 5.751 19 C -0.251 4.251 20 H 0.080 0.920 21 C -0.078 4.078 22 N -0.971 5.971 23 Si 0.979 3.021 24 H -0.275 1.275 25 H -0.296 1.296 26 H -0.276 1.276 27 C -0.157 4.157 28 C 0.105 3.895 29 C -0.137 4.137 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.054 0.946 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.029 0.971 45 H 0.026 0.974 46 H 0.372 0.628 47 H 0.252 0.748 48 H 0.060 0.940 49 H 0.096 0.904 50 H 0.103 0.897 51 H 0.112 0.888 52 H 0.126 0.874 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.496 0.051 21.498 35.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.136 4.136 3 H 0.127 0.873 4 C -0.034 4.034 5 O -0.312 6.312 6 C 0.001 3.999 7 H 0.134 0.866 8 C 0.298 3.702 9 O -0.457 6.457 10 N -0.339 5.339 11 C -0.004 4.004 12 C -0.165 4.165 13 C 0.028 3.972 14 O -0.323 6.323 15 C 0.001 3.999 16 C -0.153 4.153 17 C 0.029 3.971 18 N -0.393 5.393 19 C -0.383 4.383 20 H 0.098 0.902 21 C -0.270 4.270 22 N -0.622 5.622 23 Si 0.807 3.193 24 H -0.201 1.201 25 H -0.222 1.222 26 H -0.202 1.202 27 C -0.195 4.195 28 C -0.017 4.017 29 C -0.174 4.174 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.113 0.887 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.047 0.953 45 H 0.044 0.956 46 H 0.204 0.796 47 H 0.060 0.940 48 H 0.079 0.921 49 H 0.114 0.886 50 H 0.121 0.879 51 H 0.130 0.870 52 H 0.144 0.856 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -28.255 -0.610 21.883 35.743 hybrid contribution 0.937 0.101 -0.687 1.166 sum -27.318 -0.509 21.197 34.581 Atomic orbital electron populations 1.21729 0.92456 1.02268 1.03398 1.22761 0.98016 1.00394 0.92436 0.87310 1.23537 0.87680 0.94523 0.97688 1.88507 1.50646 1.68555 1.23505 1.23002 1.00496 0.93754 0.82686 0.86622 1.21044 0.76671 0.90555 0.81928 1.90689 1.54657 1.33812 1.66506 1.48188 1.65592 1.11412 1.08734 1.21583 0.95247 0.87355 0.96248 1.21931 0.97369 0.98386 0.98818 1.22203 0.86388 0.94511 0.94108 1.87922 1.30900 1.81247 1.32248 1.22354 0.96172 0.97655 0.83698 1.21490 0.97540 1.00680 0.95575 1.20672 0.87133 0.97120 0.92145 1.42609 1.03638 1.73665 1.19429 1.19664 0.92758 1.31016 0.94851 0.90208 1.25662 0.95167 1.03280 1.02898 1.69830 0.97404 1.54790 1.40160 0.85135 0.76182 0.78571 0.79393 1.20120 1.22206 1.20186 1.22437 0.97682 0.99242 1.00138 1.22166 0.97555 0.84995 0.96972 1.23517 0.92675 1.01123 1.00123 0.91344 0.90674 0.93018 0.91394 0.89869 0.88710 0.90393 0.89541 0.92682 0.89945 0.91515 0.91932 0.92585 0.92397 0.95335 0.95559 0.79608 0.93969 0.92067 0.88585 0.87889 0.87021 0.85583 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.60 9.14 71.98 0.66 0.06 16 2 C -0.12 -0.71 3.59 -9.49 -0.03 -0.74 16 3 H 0.11 0.30 8.14 -2.38 -0.02 0.28 16 4 C 0.04 0.51 7.41 72.45 0.54 1.04 16 5 O -0.39 -8.24 10.61 -130.49 -1.38 -9.62 16 6 C 0.06 0.90 2.91 30.51 0.09 0.98 16 7 H 0.12 1.22 7.50 -2.39 -0.02 1.20 16 8 C 0.51 10.63 7.11 87.66 0.62 11.26 16 9 O -0.58 -18.13 15.96 15.46 0.25 -17.88 16 10 N -0.61 -9.05 2.97 -818.99 -2.43 -11.48 16 11 C 0.12 1.85 6.43 86.36 0.56 2.41 16 12 C -0.13 -2.20 5.73 30.67 0.18 -2.02 16 13 C 0.09 1.41 2.57 30.62 0.08 1.48 16 14 O -0.40 -9.83 9.99 -148.98 -1.49 -11.32 16 15 C 0.08 1.84 5.75 71.98 0.41 2.25 16 16 C -0.11 -3.74 5.70 30.60 0.17 -3.56 16 17 C 0.16 6.08 6.26 86.38 0.54 6.62 16 18 N -0.75 -38.97 5.60 -343.46 -1.92 -40.89 16 19 C -0.25 -14.15 9.99 84.03 0.84 -13.31 16 20 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 21 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 22 N -0.97 -60.27 13.06 21.65 0.28 -59.99 16 23 Si 0.98 45.92 29.55 68.60 2.03 47.95 16 24 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 25 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 26 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 27 C -0.16 -1.94 5.69 30.66 0.17 -1.76 16 28 C 0.10 0.81 5.59 86.35 0.48 1.29 16 29 C -0.14 -0.98 5.26 32.09 0.17 -0.81 16 30 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.05 0.32 8.12 -2.39 -0.02 0.30 16 33 H 0.07 0.85 7.81 -2.39 -0.02 0.83 16 34 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16 36 H 0.08 1.58 7.01 -2.39 -0.02 1.57 16 37 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.08 1.05 7.79 -2.39 -0.02 1.03 16 40 H 0.07 1.33 7.84 -2.38 -0.02 1.31 16 41 H 0.06 1.31 8.08 -2.39 -0.02 1.29 16 42 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.37 20.76 7.67 -92.70 -0.71 20.05 16 47 H 0.25 15.12 8.31 -92.71 -0.77 14.34 16 48 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 49 H 0.10 0.98 7.84 -2.38 -0.02 0.96 16 50 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 51 H 0.11 0.38 4.50 -2.39 -0.01 0.37 16 52 H 0.13 0.10 6.47 -2.39 -0.02 0.09 16 53 H 0.08 0.73 7.93 -2.39 -0.02 0.71 16 Total: -1.00 -79.55 414.25 1.44 -78.11 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.17 Total: 23.97 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 5.94 Total: 1.14 kcal Atomic # 7 Polarization: -108.28 SS G_CDS: -4.08 Total: -112.36 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -2.63 Total: -38.82 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -79.55 1.44 -78.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675153442.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.254 kcal (2) G-P(sol) polarization free energy of solvation -79.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds