Wall clock time and date at job start Wed Apr 1 2020 00:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.70306 * 2 1 4 4 C 1.53196 * 109.59002 * 239.64518 * 2 1 3 5 5 H 1.08999 * 109.49273 * 305.55938 * 4 2 1 6 6 N 1.46492 * 109.49638 * 65.62343 * 4 2 1 7 7 C 1.34777 * 120.00224 * 205.00126 * 6 4 2 8 8 O 1.21275 * 119.99676 * 0.02562 * 7 6 4 9 9 C 1.50702 * 120.00220 * 180.02562 * 7 6 4 10 10 C 1.52999 * 109.46942 * 180.02562 * 9 7 6 11 11 O 1.42904 * 109.46870 * 180.02562 * 10 9 7 12 12 C 1.42893 * 113.99928 * 179.97438 * 11 10 9 13 13 C 1.53173 * 109.54664 * 269.81827 * 12 11 10 14 14 C 1.53101 * 109.16181 * 183.24209 * 13 12 11 15 15 O 1.42896 * 109.48724 * 57.47699 * 14 13 12 16 16 C 1.42907 * 114.09620 * 298.88516 * 15 14 13 17 17 C 1.53098 * 109.41117 * 61.15912 * 16 15 14 18 18 C 1.53036 * 109.31363 * 185.57760 * 4 2 1 19 19 C 1.53040 * 109.53681 * 61.36498 * 18 4 2 20 20 C 1.53194 * 109.31618 * 298.63139 * 19 18 4 21 21 N 1.46930 * 109.58455 * 120.35450 * 2 1 3 22 22 C 1.36933 * 120.63559 * 353.37634 * 21 2 1 23 23 H 1.08005 * 119.99556 * 41.20599 * 22 21 2 24 24 C 1.38808 * 120.00008 * 221.21325 * 22 21 2 25 25 N 1.31627 * 119.99529 * 214.87549 * 24 22 21 26 26 Si 1.86794 * 120.00309 * 34.87440 * 24 22 21 27 27 H 1.48500 * 109.47274 * 84.62951 * 26 24 22 28 28 H 1.48500 * 109.47195 * 204.62532 * 26 24 22 29 29 H 1.48494 * 109.47372 * 324.62843 * 26 24 22 30 30 H 1.09005 * 109.46964 * 180.35417 * 1 2 3 31 31 H 1.09000 * 109.47238 * 300.35212 * 1 2 3 32 32 H 1.09003 * 109.47486 * 60.35970 * 1 2 3 33 33 H 0.97000 * 120.00071 * 25.00403 * 6 4 2 34 34 H 1.09001 * 109.47167 * 59.99732 * 9 7 6 35 35 H 1.09008 * 109.46737 * 299.99894 * 9 7 6 36 36 H 1.08994 * 109.47256 * 60.00316 * 10 9 7 37 37 H 1.08998 * 109.47059 * 299.99397 * 10 9 7 38 38 H 1.09001 * 109.54625 * 29.99647 * 12 11 10 39 39 H 1.09001 * 109.52158 * 303.06358 * 13 12 11 40 40 H 1.09007 * 109.51922 * 63.24353 * 13 12 11 41 41 H 1.09000 * 109.40670 * 297.49342 * 14 13 12 42 42 H 1.08999 * 109.49207 * 177.51109 * 14 13 12 43 43 H 1.08996 * 109.48575 * 301.18165 * 16 15 14 44 44 H 1.08995 * 109.48964 * 181.14611 * 16 15 14 45 45 H 1.08998 * 109.52361 * 182.48142 * 17 16 15 46 46 H 1.09003 * 109.57166 * 62.32791 * 17 16 15 47 47 H 1.08996 * 109.45763 * 181.38598 * 18 4 2 48 48 H 1.09001 * 109.45792 * 301.34336 * 18 4 2 49 49 H 1.09007 * 109.49852 * 178.68201 * 19 18 4 50 50 H 1.08998 * 109.49776 * 58.58690 * 19 18 4 51 51 H 1.09001 * 109.58607 * 294.85365 * 20 19 18 52 52 H 1.08996 * 109.58527 * 174.42276 * 20 19 18 53 53 H 0.97004 * 119.99750 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2454 5 1 1.6026 -1.7251 -1.2916 6 7 1.6706 0.0267 -2.4434 7 6 1.5472 -0.6049 -3.6277 8 8 1.7447 -1.7992 -3.7014 9 6 1.1640 0.1730 -4.8602 10 6 1.0931 -0.7743 -6.0596 11 8 0.7304 -0.0366 -7.2285 12 6 0.6364 -0.8320 -8.4118 13 6 1.9964 -0.8664 -9.1156 14 6 1.8661 -1.6525 -10.4228 15 8 0.8626 -1.0507 -11.2430 16 6 -0.4397 -1.0351 -10.6548 17 6 -0.4025 -0.2222 -9.3580 18 6 3.5675 -0.8479 -1.1701 19 6 3.9568 -1.6657 0.0635 20 6 3.4650 -0.9469 1.3238 21 7 2.0224 -0.6996 1.1945 22 6 1.1537 -1.1127 2.1690 23 1 0.2056 -1.5523 1.8962 24 6 1.4915 -0.9666 3.5074 25 7 1.1105 -1.8708 4.3848 26 14 2.4868 0.5131 4.0633 27 1 1.5750 1.6596 4.3073 28 1 3.2101 0.1806 5.3169 29 1 3.4664 0.8757 3.0079 30 1 -0.3633 -1.0277 0.0064 31 1 -0.3634 0.5193 0.8868 32 1 -0.3634 0.5082 -0.8932 33 1 1.5123 0.9819 -2.3844 34 1 1.9104 0.9444 -5.0497 35 1 0.1905 0.6390 -4.7077 36 1 0.3465 -1.5454 -5.8699 37 1 2.0664 -1.2406 -6.2123 38 1 0.3373 -1.8461 -8.1468 39 1 2.3190 0.1515 -9.3347 40 1 2.7288 -1.3503 -8.4693 41 1 1.5844 -2.6817 -10.2000 42 1 2.8202 -1.6428 -10.9497 43 1 -0.7516 -2.0560 -10.4349 44 1 -1.1467 -0.5804 -11.3487 45 1 -1.3842 -0.2458 -8.8850 46 1 -0.1305 0.8095 -9.5813 47 1 3.9378 -1.3447 -2.0668 48 1 4.0061 0.1474 -1.0993 49 1 5.0412 -1.7696 0.1038 50 1 3.4983 -2.6528 0.0053 51 1 3.9902 0.0021 1.4317 52 1 3.6518 -1.5718 2.1972 53 1 1.3469 -1.7689 5.3200 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676894904.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:52 Heat of formation + Delta-G solvation = -143.150431 kcal Electronic energy + Delta-G solvation = -30324.589632 eV Core-core repulsion = 26195.419905 eV Total energy + Delta-G solvation = -4129.169727 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.17953 -40.56475 -39.40982 -38.41216 -35.88318 -34.45187 -34.00835 -33.48795 -32.31251 -32.11427 -31.05804 -27.97318 -26.72868 -25.78155 -24.86044 -24.48907 -23.39783 -22.35585 -21.52687 -21.35792 -20.92936 -18.66051 -18.28186 -17.52145 -17.43098 -17.25443 -16.96277 -16.73638 -16.57358 -16.10391 -15.94803 -15.75945 -15.37087 -15.17933 -15.03790 -14.92841 -14.59523 -14.50581 -14.29470 -14.14634 -13.72564 -13.43016 -13.34709 -12.99585 -12.96483 -12.72464 -12.66595 -12.62823 -12.38430 -12.33253 -12.09390 -12.02790 -11.83778 -11.80507 -11.74347 -11.55075 -11.37146 -11.28460 -10.90687 -10.68519 -10.51444 -10.48173 -10.00143 -8.64723 -8.24210 -5.51856 1.40211 1.47098 1.55298 1.65246 1.95771 2.49050 2.71136 2.94034 2.97924 3.45193 3.71494 3.72947 3.77915 3.89024 3.95924 3.98091 4.04402 4.07283 4.13602 4.19783 4.25195 4.30043 4.36724 4.45028 4.49717 4.57888 4.60099 4.68449 4.73510 4.74913 4.78311 4.79962 4.82278 4.86360 4.92739 5.00431 5.03389 5.07503 5.10706 5.11466 5.18877 5.23026 5.27807 5.41719 5.49108 5.63449 5.94888 6.16050 6.20553 6.27432 6.60684 7.01520 7.29798 7.66284 8.15519 8.95532 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.031535 B = 0.001844 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.694718 B =15176.930812 C =15498.938976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.160 3.840 3 H 0.054 0.946 4 C 0.144 3.856 5 H 0.052 0.948 6 N -0.706 5.706 7 C 0.516 3.484 8 O -0.589 6.589 9 C -0.127 4.127 10 C 0.081 3.919 11 O -0.389 6.389 12 C 0.082 3.918 13 C -0.176 4.176 14 C 0.061 3.939 15 O -0.402 6.402 16 C 0.061 3.939 17 C -0.149 4.149 18 C -0.110 4.110 19 C -0.127 4.127 20 C 0.138 3.862 21 N -0.604 5.604 22 C -0.261 4.261 23 H 0.040 0.960 24 C -0.003 4.003 25 N -0.929 5.929 26 Si 0.909 3.091 27 H -0.291 1.291 28 H -0.305 1.305 29 H -0.238 1.238 30 H 0.029 0.971 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.416 0.584 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.108 0.892 43 H 0.062 0.938 44 H 0.115 0.885 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.056 0.944 48 H 0.076 0.924 49 H 0.082 0.918 50 H 0.041 0.959 51 H 0.039 0.961 52 H 0.042 0.958 53 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.305 6.973 -29.077 29.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.054 3.946 3 H 0.071 0.929 4 C 0.038 3.962 5 H 0.070 0.930 6 N -0.358 5.358 7 C 0.304 3.696 8 O -0.469 6.469 9 C -0.167 4.167 10 C 0.004 3.996 11 O -0.308 6.308 12 C 0.025 3.975 13 C -0.214 4.214 14 C -0.015 4.015 15 O -0.321 6.321 16 C -0.016 4.016 17 C -0.187 4.187 18 C -0.149 4.149 19 C -0.167 4.167 20 C 0.013 3.987 21 N -0.329 5.329 22 C -0.390 4.390 23 H 0.058 0.942 24 C -0.201 4.201 25 N -0.571 5.571 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.232 1.232 29 H -0.161 1.161 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.253 0.747 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.133 0.867 45 H 0.107 0.893 46 H 0.092 0.908 47 H 0.075 0.925 48 H 0.095 0.905 49 H 0.101 0.899 50 H 0.060 0.940 51 H 0.057 0.943 52 H 0.060 0.940 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.423 6.353 -29.132 29.851 hybrid contribution 0.159 0.188 1.583 1.602 sum 1.581 6.541 -27.550 28.360 Atomic orbital electron populations 1.21697 0.94746 1.00639 1.01290 1.20892 0.94225 0.94089 0.85386 0.92858 1.21260 0.95112 0.95449 0.84406 0.93011 1.45875 1.69786 1.12946 1.07149 1.20914 0.75856 0.87526 0.85331 1.90707 1.52399 1.17342 1.86458 1.21422 1.06528 0.99154 0.89598 1.22075 0.99632 0.93477 0.84447 1.87830 1.90362 1.36209 1.16410 1.22245 0.95487 0.94767 0.85014 1.22700 0.98123 1.02574 0.97992 1.22658 0.92701 0.95529 0.90625 1.87920 1.18606 1.81549 1.44008 1.22732 0.84743 0.99897 0.94189 1.22281 0.99587 1.01189 0.95637 1.21699 0.95028 1.00787 0.97356 1.21933 1.00854 0.98670 0.95228 1.21382 0.83851 0.97173 0.96301 1.44390 1.02736 1.66264 1.19525 1.18395 1.01549 1.33846 0.85240 0.94199 1.26106 0.99016 0.98971 0.96057 1.70191 1.50163 1.33153 1.03570 0.86320 0.79563 0.82839 0.77716 1.21795 1.23203 1.16133 0.95183 0.93349 0.90303 0.74664 0.85796 0.86011 0.93491 0.93286 0.91763 0.90820 0.90421 0.92199 0.87356 0.92020 0.86739 0.89325 0.90759 0.92506 0.90494 0.89927 0.93971 0.94347 0.93964 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.41 7.96 71.98 0.57 -3.84 16 2 C 0.16 5.67 3.03 44.97 0.14 5.81 16 3 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16 4 C 0.14 4.59 2.00 45.07 0.09 4.68 16 5 H 0.05 2.07 7.58 -2.39 -0.02 2.05 16 6 N -0.71 -16.34 4.57 -442.18 -2.02 -18.36 16 7 C 0.52 12.67 7.80 87.66 0.68 13.35 16 8 O -0.59 -20.07 15.64 -3.01 -0.05 -20.11 16 9 C -0.13 -2.07 6.07 29.85 0.18 -1.89 16 10 C 0.08 1.54 5.04 71.98 0.36 1.91 16 11 O -0.39 -7.12 10.00 -148.98 -1.49 -8.61 16 12 C 0.08 1.26 2.69 30.71 0.08 1.35 16 13 C -0.18 -2.46 5.77 30.69 0.18 -2.29 16 14 C 0.06 0.76 6.84 72.02 0.49 1.25 16 15 O -0.40 -6.22 10.77 -148.98 -1.60 -7.82 16 16 C 0.06 0.67 6.84 72.01 0.49 1.17 16 17 C -0.15 -1.89 5.79 30.69 0.18 -1.71 16 18 C -0.11 -3.31 5.46 30.62 0.17 -3.14 16 19 C -0.13 -4.35 6.08 30.67 0.19 -4.16 16 20 C 0.14 5.63 4.59 86.36 0.40 6.02 16 21 N -0.60 -27.07 2.47 -675.20 -1.67 -28.73 16 22 C -0.26 -14.19 8.43 84.03 0.71 -13.49 16 23 H 0.04 2.42 6.81 -2.91 -0.02 2.40 16 24 C 0.00 -0.15 4.82 84.86 0.41 0.26 16 25 N -0.93 -56.71 13.97 21.65 0.30 -56.41 16 26 Si 0.91 43.32 27.40 68.60 1.88 45.20 16 27 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 28 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 29 H -0.24 -10.30 5.24 99.48 0.52 -9.78 16 30 H 0.03 1.19 7.38 -2.38 -0.02 1.17 16 31 H 0.05 1.85 7.71 -2.39 -0.02 1.83 16 32 H 0.08 2.07 7.79 -2.39 -0.02 2.05 16 33 H 0.42 6.70 8.60 -92.71 -0.80 5.91 16 34 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.12 1.54 8.14 -2.38 -0.02 1.53 16 36 H 0.05 1.00 8.04 -2.39 -0.02 0.98 16 37 H 0.05 1.01 7.93 -2.39 -0.02 0.99 16 38 H 0.06 0.96 7.79 -2.39 -0.02 0.94 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.08 1.06 7.97 -2.38 -0.02 1.04 16 41 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 42 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 49 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 50 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 51 H 0.04 1.48 6.71 -2.39 -0.02 1.47 16 52 H 0.04 1.93 7.02 -2.39 -0.02 1.91 16 53 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -71.49 407.12 0.56 -70.92 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -0.11 Total: 18.65 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 5.32 Total: 5.28 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -3.39 Total: -103.50 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -3.14 Total: -36.55 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.20 kcal Total: -71.49 0.56 -70.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676894904.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.229 kcal (2) G-P(sol) polarization free energy of solvation -71.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds