Wall clock time and date at job start Tue Mar 31 2020 23:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.45580 * 2 1 4 4 C 1.53043 * 109.44877 * 240.03713 * 2 1 3 5 5 C 1.53623 * 109.24271 * 178.49751 * 4 2 1 6 6 N 1.46926 * 108.54040 * 54.85636 * 5 4 2 7 7 C 1.34775 * 120.63186 * 126.37452 * 6 5 4 8 8 O 1.21274 * 120.00100 * 174.16588 * 7 6 5 9 9 C 1.50709 * 119.99530 * 354.15919 * 7 6 5 10 10 O 1.42899 * 109.46676 * 180.02562 * 9 7 6 11 11 C 1.42902 * 113.99901 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47267 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.86943 * 53.99169 * 12 11 10 14 14 C 1.54097 * 109.87741 * 174.99881 * 12 11 10 15 15 C 1.54808 * 104.18783 * 121.45590 * 14 12 11 16 16 C 1.54994 * 102.09155 * 20.87774 * 15 14 12 17 17 O 1.43742 * 109.87747 * 292.82967 * 12 11 10 18 18 C 1.46930 * 118.73910 * 306.08983 * 6 5 4 19 19 H 1.09001 * 109.58529 * 293.93605 * 18 6 5 20 20 C 1.52999 * 109.58593 * 173.64827 * 18 6 5 21 21 N 1.46499 * 109.47095 * 181.65235 * 20 18 6 22 22 C 1.36938 * 119.99853 * 184.95295 * 21 20 18 23 23 H 1.07994 * 119.99920 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99819 * 180.02562 * 22 21 20 25 25 N 1.31625 * 120.00130 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99996 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47100 * 90.00280 * 26 24 22 28 28 H 1.48507 * 109.47205 * 210.00052 * 26 24 22 29 29 H 1.48499 * 109.47079 * 329.99836 * 26 24 22 30 30 C 1.53032 * 109.45850 * 119.97424 * 2 1 3 31 31 H 1.08999 * 109.47231 * 300.02577 * 1 2 3 32 32 H 1.09005 * 109.46887 * 60.02345 * 1 2 3 33 33 H 1.08991 * 109.47210 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.49589 * 298.57339 * 4 2 1 35 35 H 1.09003 * 109.49894 * 58.66840 * 4 2 1 36 36 H 1.09004 * 109.73582 * 295.11768 * 5 4 2 37 37 H 1.08999 * 109.66655 * 174.55165 * 5 4 2 38 38 H 1.09000 * 109.47083 * 60.00652 * 9 7 6 39 39 H 1.08998 * 109.47107 * 299.99886 * 9 7 6 40 40 H 1.09005 * 109.46642 * 299.99647 * 11 10 9 41 41 H 1.08993 * 109.47066 * 59.99608 * 11 10 9 42 42 H 1.08998 * 110.48493 * 240.13118 * 14 12 11 43 43 H 1.08998 * 110.49047 * 2.64366 * 14 12 11 44 44 H 1.08997 * 110.90846 * 139.08058 * 15 14 12 45 45 H 1.09001 * 110.90512 * 262.68233 * 15 14 12 46 46 H 1.08999 * 110.62100 * 81.47817 * 16 15 14 47 47 H 1.09002 * 110.61918 * 204.31785 * 16 15 14 48 48 H 1.09000 * 109.47510 * 301.65331 * 20 18 6 49 49 H 1.09007 * 109.46853 * 61.65484 * 20 18 6 50 50 H 0.96997 * 119.99655 * 4.95025 * 21 20 18 51 51 H 0.96996 * 120.00128 * 179.97438 * 25 24 22 52 52 H 1.09003 * 109.49747 * 61.42269 * 30 2 1 53 53 H 1.08995 * 109.50310 * 301.32441 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7207 -1.2502 5 6 3.5754 -0.6851 -1.2646 6 7 4.0676 -1.2494 -0.0004 7 6 4.9617 -2.2578 -0.0006 8 8 5.4402 -2.6441 1.0447 9 6 5.3666 -2.9056 -1.2997 10 8 6.3172 -3.9404 -1.0399 11 6 6.7693 -4.6219 -2.2118 12 6 7.7783 -5.7020 -1.8164 13 1 7.3434 -6.3566 -1.0613 14 6 8.1777 -6.5251 -3.0564 15 6 9.7131 -6.3508 -3.1492 16 6 10.0800 -5.9297 -1.7034 17 8 8.9748 -5.0899 -1.3064 18 6 3.5714 -0.6890 1.2640 19 1 3.9167 0.3396 1.3682 20 6 4.0911 -1.5258 2.4347 21 7 3.5630 -0.9886 3.6912 22 6 3.9739 -1.5145 4.8870 23 1 4.6869 -2.3255 4.9037 24 6 3.4731 -1.0059 6.0775 25 7 2.6037 -0.0179 6.0570 26 14 4.0329 -1.7237 7.7086 27 1 5.2313 -0.9890 8.1875 28 1 2.9413 -1.5944 8.7072 29 1 4.3712 -3.1583 7.5281 30 6 2.0398 -0.7209 1.2499 31 1 -0.3633 0.5142 0.8897 32 1 -0.3633 0.5135 -0.8902 33 1 -0.3633 -1.0276 0.0005 34 1 1.6974 -1.7555 -1.2385 35 1 1.6570 -0.2206 -2.1399 36 1 3.9188 0.3447 -1.3634 37 1 3.9483 -1.2785 -2.0994 38 1 5.8133 -2.1576 -1.9549 39 1 4.4876 -3.3329 -1.7822 40 1 5.9194 -5.0844 -2.7138 41 1 7.2455 -3.9094 -2.8854 42 1 7.9207 -7.5750 -2.9162 43 1 7.6922 -6.1303 -3.9489 44 1 10.1960 -7.2912 -3.4149 45 1 9.9733 -5.5669 -3.8605 46 1 10.1504 -6.8033 -1.0553 47 1 11.0146 -5.3689 -1.6924 48 1 3.7651 -2.5591 2.3158 49 1 5.1804 -1.4882 2.4528 50 1 2.9224 -0.2605 3.6761 51 1 2.2535 0.3373 6.8889 52 1 1.6976 -1.7557 1.2381 53 1 1.6574 -0.2209 2.1398 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689115329.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:13 Heat of formation + Delta-G solvation = -128.899891 kcal Electronic energy + Delta-G solvation = -30813.935375 eV Core-core repulsion = 26685.383598 eV Total energy + Delta-G solvation = -4128.551777 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.65430 -40.49815 -39.06200 -38.07999 -36.67109 -34.97206 -33.95637 -33.16427 -31.87438 -31.42284 -29.79557 -28.28863 -27.24307 -26.02206 -24.93142 -24.26005 -23.01092 -22.59416 -21.97665 -21.35786 -20.16652 -19.16196 -18.33073 -17.85053 -17.52865 -17.11129 -16.85993 -16.74628 -16.36656 -16.31902 -15.82369 -15.43580 -15.31034 -15.27034 -14.83132 -14.56653 -14.51167 -14.46309 -14.32017 -13.92993 -13.81151 -13.27307 -13.09832 -12.90189 -12.84638 -12.75179 -12.71255 -12.53329 -12.50329 -12.29598 -12.21718 -12.07560 -12.02828 -12.00392 -11.80751 -11.56062 -11.38333 -11.22292 -11.02164 -10.69467 -10.66725 -10.13053 -9.61696 -8.98795 -7.98767 -5.26949 1.41275 1.44646 1.53654 1.59522 1.69741 2.52716 2.76965 2.96473 3.33222 3.49499 3.63175 3.76292 3.79446 3.88797 3.92542 3.96733 4.08704 4.08822 4.11610 4.18148 4.22214 4.26367 4.30674 4.36950 4.43703 4.47392 4.55156 4.64361 4.64707 4.70153 4.80365 4.81685 4.90300 4.90458 4.92533 4.96208 5.06860 5.08466 5.11934 5.18767 5.20006 5.26348 5.29039 5.41206 5.43828 5.54957 5.65558 5.94479 6.15015 6.24762 6.48256 7.24571 7.30318 8.03946 8.33070 9.24722 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008700 B = 0.002930 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3217.523220 B = 9555.201747 C =12453.461380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 H 0.077 0.923 4 C -0.122 4.122 5 C 0.099 3.901 6 N -0.603 5.603 7 C 0.493 3.507 8 O -0.563 6.563 9 C 0.055 3.945 10 O -0.400 6.400 11 C 0.059 3.941 12 C 0.066 3.934 13 H 0.056 0.944 14 C -0.140 4.140 15 C -0.147 4.147 16 C 0.029 3.971 17 O -0.403 6.403 18 C 0.152 3.848 19 H 0.068 0.932 20 C 0.173 3.827 21 N -0.744 5.744 22 C -0.246 4.246 23 H 0.058 0.942 24 C -0.071 4.071 25 N -0.966 5.966 26 Si 0.975 3.025 27 H -0.284 1.284 28 H -0.285 1.285 29 H -0.277 1.277 30 C -0.111 4.111 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.112 0.888 36 H 0.087 0.913 37 H 0.119 0.881 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.084 0.916 46 H 0.060 0.940 47 H 0.098 0.902 48 H -0.004 1.004 49 H 0.027 0.973 50 H 0.374 0.626 51 H 0.254 0.746 52 H 0.048 0.952 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.673 -7.640 -32.174 33.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 H 0.095 0.905 4 C -0.160 4.160 5 C -0.022 4.022 6 N -0.339 5.339 7 C 0.282 3.718 8 O -0.440 6.440 9 C -0.024 4.024 10 O -0.320 6.320 11 C -0.016 4.016 12 C 0.008 3.992 13 H 0.074 0.926 14 C -0.177 4.177 15 C -0.184 4.184 16 C -0.047 4.047 17 O -0.323 6.323 18 C 0.048 3.952 19 H 0.086 0.914 20 C 0.048 3.952 21 N -0.389 5.389 22 C -0.378 4.378 23 H 0.076 0.924 24 C -0.264 4.264 25 N -0.616 5.616 26 Si 0.803 3.197 27 H -0.211 1.211 28 H -0.211 1.211 29 H -0.202 1.202 30 C -0.149 4.149 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.130 0.870 36 H 0.105 0.895 37 H 0.137 0.863 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.112 0.888 41 H 0.090 0.910 42 H 0.111 0.889 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.103 0.897 46 H 0.078 0.922 47 H 0.116 0.884 48 H 0.014 0.986 49 H 0.045 0.955 50 H 0.208 0.792 51 H 0.063 0.937 52 H 0.067 0.933 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.105 -7.837 -31.252 32.622 hybrid contribution -0.013 -0.169 1.600 1.609 sum 5.092 -8.006 -29.652 31.133 Atomic orbital electron populations 1.21779 0.94153 1.01793 1.02215 1.21150 0.96495 0.99537 0.93620 0.90453 1.22064 0.94145 1.01516 0.98237 1.22303 0.95160 1.00774 0.83949 1.48215 1.42974 1.34854 1.07824 1.21228 0.78846 0.80024 0.91726 1.90836 1.54833 1.63681 1.34691 1.22371 0.94833 0.91971 0.93257 1.88071 1.60829 1.50140 1.32934 1.23028 0.96969 0.94575 0.87070 1.22952 0.86108 0.93718 0.96446 0.92608 1.22928 0.96665 1.01033 0.97107 1.23130 0.95242 1.03677 0.96376 1.23809 0.90633 0.94775 0.95468 1.89005 1.16323 1.49094 1.77887 1.21199 0.94730 0.96429 0.82856 0.91391 1.21087 0.96094 0.93499 0.84569 1.42709 1.52691 1.42197 1.01311 1.19490 1.19572 1.13060 0.85671 0.92410 1.25533 1.00276 0.99644 1.00905 1.69801 1.35363 1.29741 1.26741 0.85126 0.77213 0.77929 0.79415 1.21087 1.21059 1.20236 1.21875 0.93061 1.00646 0.99366 0.93913 0.90152 0.93107 0.91660 0.87004 0.89481 0.86318 0.87161 0.86906 0.88805 0.91038 0.88894 0.87999 0.88033 0.89732 0.92159 0.88391 0.98577 0.95508 0.79230 0.93737 0.93340 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.19 71.98 0.66 -2.16 16 2 C -0.09 -1.96 2.68 -10.77 -0.03 -1.99 16 3 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 4 C -0.12 -1.80 5.38 30.82 0.17 -1.63 16 5 C 0.10 1.54 6.38 86.51 0.55 2.09 16 6 N -0.60 -17.45 2.97 -794.17 -2.36 -19.80 16 7 C 0.49 16.66 7.61 87.66 0.67 17.33 16 8 O -0.56 -26.87 12.05 16.02 0.19 -26.68 16 9 C 0.05 1.19 4.77 71.24 0.34 1.53 16 10 O -0.40 -11.62 9.87 -126.83 -1.25 -12.87 16 11 C 0.06 1.08 5.39 71.98 0.39 1.46 16 12 C 0.07 1.32 3.71 30.97 0.11 1.43 16 13 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 14 C -0.14 -1.46 6.64 31.58 0.21 -1.25 16 15 C -0.15 -1.47 7.15 31.89 0.23 -1.24 16 16 C 0.03 0.50 7.72 72.66 0.56 1.06 16 17 O -0.40 -10.69 11.18 -147.43 -1.65 -12.34 16 18 C 0.15 5.71 3.10 44.98 0.14 5.85 16 19 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 20 C 0.17 8.91 4.14 86.38 0.36 9.27 16 21 N -0.74 -43.70 5.38 -343.45 -1.85 -45.55 16 22 C -0.25 -15.80 9.99 84.03 0.84 -14.97 16 23 H 0.06 3.77 7.83 -2.91 -0.02 3.75 16 24 C -0.07 -4.48 5.50 84.86 0.47 -4.01 16 25 N -0.97 -62.46 13.06 21.65 0.28 -62.18 16 26 Si 0.97 50.48 29.55 68.60 2.03 52.50 16 27 H -0.28 -14.34 7.11 99.48 0.71 -13.64 16 28 H -0.28 -14.28 7.11 99.48 0.71 -13.58 16 29 H -0.28 -13.99 7.11 99.48 0.71 -13.29 16 30 C -0.11 -3.73 4.38 30.67 0.13 -3.59 16 31 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.12 0.96 5.93 -2.39 -0.01 0.95 16 38 H 0.11 1.58 7.70 -2.39 -0.02 1.57 16 39 H 0.11 1.57 7.93 -2.39 -0.02 1.55 16 40 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.10 0.63 7.70 -2.39 -0.02 0.61 16 44 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.00 -0.20 7.25 -2.39 -0.02 -0.22 16 49 H 0.03 1.56 6.22 -2.38 -0.01 1.54 16 50 H 0.37 22.15 6.37 -92.71 -0.59 21.56 16 51 H 0.25 15.69 8.31 -92.71 -0.77 14.91 16 52 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 53 H 0.05 2.15 6.90 -2.39 -0.02 2.13 16 Total: -1.00 -91.55 409.66 1.48 -90.07 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.29 Total: 27.67 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 5.80 Total: 9.18 kcal Atomic # 7 Polarization: -123.61 SS G_CDS: -3.92 Total: -127.53 kcal Atomic # 8 Polarization: -49.19 SS G_CDS: -2.71 Total: -51.89 kcal Atomic # 14 Polarization: 50.48 SS G_CDS: 2.03 Total: 52.50 kcal Total: -91.55 1.48 -90.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689115329.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.829 kcal (2) G-P(sol) polarization free energy of solvation -91.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds