Wall clock time and date at job start Tue Mar 31 2020 23:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00217 * 2 1 4 4 C 1.53000 * 109.47213 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46911 * 65.00577 * 4 3 2 6 6 C 1.36936 * 120.00083 * 94.17833 * 5 4 3 7 7 H 1.07997 * 120.00308 * 217.77801 * 6 5 4 8 8 C 1.38815 * 119.99919 * 37.77852 * 6 5 4 9 9 N 1.31620 * 119.99800 * 213.59760 * 8 6 5 10 10 Si 1.86796 * 119.99725 * 33.59711 * 8 6 5 11 11 H 1.48505 * 109.47220 * 93.67504 * 10 8 6 12 12 H 1.48504 * 109.47011 * 213.67029 * 10 8 6 13 13 H 1.48497 * 109.47605 * 333.67195 * 10 8 6 14 14 C 1.46500 * 119.99959 * 274.18453 * 5 4 3 15 15 C 1.53041 * 109.45743 * 240.25279 * 14 5 4 16 16 C 1.53191 * 109.31104 * 178.59968 * 15 14 5 17 17 N 1.46924 * 108.76966 * 54.65323 * 16 15 14 18 18 C 1.34772 * 120.63187 * 126.40177 * 17 16 15 19 19 O 1.21284 * 120.00256 * 179.97438 * 18 17 16 20 20 C 1.50699 * 120.00250 * 359.97438 * 18 17 16 21 21 H 1.09000 * 110.33257 * 305.79689 * 20 18 17 22 22 C 1.54475 * 110.37188 * 68.16168 * 20 18 17 23 23 C 1.54510 * 104.06189 * 142.81351 * 22 20 18 24 24 H 1.09008 * 110.51030 * 241.35316 * 23 22 20 25 25 C 1.53001 * 110.62780 * 118.70731 * 23 22 20 26 26 C 1.54470 * 104.06304 * 0.02562 * 23 22 20 27 27 O 1.44420 * 104.80465 * 336.02030 * 26 23 22 28 28 C 1.46927 * 118.73468 * 306.38808 * 17 16 15 29 29 C 1.53042 * 109.46420 * 120.19643 * 14 5 4 30 30 H 1.08998 * 109.47103 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47011 * 300.00080 * 1 2 3 32 32 H 1.08999 * 109.46505 * 60.00155 * 1 2 3 33 33 H 1.08992 * 109.47407 * 300.00100 * 3 2 1 34 34 H 1.09001 * 109.46656 * 60.00254 * 3 2 1 35 35 H 1.09004 * 109.47168 * 185.00275 * 4 3 2 36 36 H 1.08997 * 109.47308 * 305.00262 * 4 3 2 37 37 H 0.96997 * 119.99228 * 180.02562 * 9 8 6 38 38 H 1.09008 * 109.46108 * 0.22063 * 14 5 4 39 39 H 1.09005 * 109.49564 * 298.56492 * 15 14 5 40 40 H 1.08999 * 109.49807 * 58.66037 * 15 14 5 41 41 H 1.08998 * 109.59560 * 294.86239 * 16 15 14 42 42 H 1.09002 * 109.70376 * 174.50794 * 16 15 14 43 43 H 1.09006 * 110.51442 * 261.45960 * 22 20 18 44 44 H 1.08997 * 110.51323 * 24.16680 * 22 20 18 45 45 H 1.09002 * 109.47051 * 303.82875 * 25 23 22 46 46 H 1.08992 * 109.47694 * 63.83490 * 25 23 22 47 47 H 1.09004 * 109.47046 * 183.83688 * 25 23 22 48 48 H 1.09004 * 110.37038 * 217.19259 * 26 23 22 49 49 H 1.08992 * 110.37814 * 94.85632 * 26 23 22 50 50 H 1.09000 * 109.58370 * 293.81281 * 28 17 16 51 51 H 1.09003 * 109.58433 * 173.39274 * 28 17 16 52 52 H 1.08998 * 109.49061 * 301.33829 * 29 14 5 53 53 H 1.08997 * 109.49614 * 61.39957 * 29 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2510 6 6 4.3499 1.3482 -2.3097 7 1 4.0975 1.0515 -3.3169 8 6 5.0528 2.5246 -2.0883 9 7 4.8635 3.5624 -2.8754 10 14 6.2671 2.6347 -0.6732 11 1 7.6283 2.2971 -1.1616 12 1 6.2659 4.0153 -0.1261 13 1 5.8728 1.6794 0.3931 14 6 4.0184 -0.8956 -1.3699 15 6 5.4517 -1.3420 -1.6675 16 6 5.4980 -2.8706 -1.7566 17 7 4.5093 -3.3166 -2.7476 18 6 4.8727 -4.1207 -3.7663 19 8 4.0470 -4.4824 -4.5778 20 6 6.3051 -4.5705 -3.8973 21 1 6.9733 -3.7093 -3.9042 22 6 6.6744 -5.5314 -2.7456 23 6 7.6015 -6.5741 -3.4094 24 1 7.1661 -7.5711 -3.3404 25 6 8.9885 -6.5505 -2.7640 26 6 7.6831 -6.1194 -4.8834 27 8 6.4797 -5.3508 -5.0997 28 6 3.1168 -2.8696 -2.6068 29 6 3.0972 -1.3410 -2.5080 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.6887 1.8464 -0.8899 34 1 1.6887 1.8463 0.8900 35 1 3.9785 2.1765 0.0903 36 1 3.8508 0.5684 0.8426 37 1 5.3549 4.3842 -2.7208 38 1 3.6846 -1.3459 -0.4350 39 1 5.7774 -0.9121 -2.6148 40 1 6.1114 -1.0042 -0.8682 41 1 5.2600 -3.3009 -0.7838 42 1 6.4936 -3.1909 -2.0639 43 1 7.2038 -4.9968 -1.9569 44 1 5.7808 -6.0128 -2.3484 45 1 9.3999 -5.5429 -2.8237 46 1 8.9080 -6.8488 -1.7187 47 1 9.6458 -7.2431 -3.2899 48 1 7.7053 -6.9842 -5.5466 49 1 8.5641 -5.4971 -5.0404 50 1 2.6846 -3.2998 -1.7034 51 1 2.5415 -3.1869 -3.4765 52 1 2.0809 -1.0024 -2.3069 53 1 3.4449 -0.9107 -3.4471 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699690375.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:43 Heat of formation + Delta-G solvation = -118.925210 kcal Electronic energy + Delta-G solvation = -32149.045949 eV Core-core repulsion = 28020.926706 eV Total energy + Delta-G solvation = -4128.119243 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.70319 -40.08670 -39.15230 -38.25256 -36.67827 -34.55525 -33.99784 -33.04228 -32.19499 -30.80500 -29.86077 -27.19875 -27.04735 -26.74893 -25.29460 -24.30179 -23.92461 -22.64830 -21.46114 -21.39667 -20.20102 -18.68385 -18.12733 -17.51116 -17.34764 -17.13367 -16.89391 -16.59079 -16.28617 -15.98806 -15.88570 -15.66577 -15.53403 -14.99290 -14.91127 -14.82817 -14.52645 -14.33200 -14.06460 -13.85528 -13.66929 -13.56398 -13.32227 -13.20595 -13.02585 -12.76509 -12.63566 -12.56469 -12.25483 -12.19909 -12.11901 -11.98218 -11.91883 -11.74363 -11.67616 -11.59246 -11.33562 -11.10767 -11.00607 -10.59631 -10.50513 -10.41267 -9.66589 -8.63329 -8.18756 -5.42587 1.40100 1.47193 1.49629 1.57831 1.82129 2.50326 2.97100 2.98706 3.09146 3.28895 3.43819 3.58558 3.80397 3.89150 3.99158 4.14377 4.16679 4.22937 4.29114 4.37667 4.42854 4.45731 4.48709 4.55061 4.56219 4.62399 4.65512 4.68264 4.71056 4.75068 4.81852 4.85026 4.86049 4.87456 4.87625 4.89618 4.99864 5.09621 5.12737 5.17202 5.23120 5.25214 5.39583 5.45671 5.61225 5.64790 5.76957 6.01444 6.29447 6.37512 6.41898 7.09404 7.09964 7.76172 8.20606 9.02447 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012257 B = 0.003482 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.901675 B = 8039.535427 C = 9180.451438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.393 6.393 3 C 0.051 3.949 4 C 0.147 3.853 5 N -0.599 5.599 6 C -0.247 4.247 7 H 0.026 0.974 8 C -0.010 4.010 9 N -0.937 5.937 10 Si 0.913 3.087 11 H -0.297 1.297 12 H -0.304 1.304 13 H -0.230 1.230 14 C 0.186 3.814 15 C -0.141 4.141 16 C 0.111 3.889 17 N -0.599 5.599 18 C 0.512 3.488 19 O -0.582 6.582 20 C 0.058 3.942 21 H 0.105 0.895 22 C -0.134 4.134 23 C -0.119 4.119 24 H 0.088 0.912 25 C -0.140 4.140 26 C 0.036 3.964 27 O -0.386 6.386 28 C 0.124 3.876 29 C -0.121 4.121 30 H 0.098 0.902 31 H 0.049 0.951 32 H 0.027 0.973 33 H 0.021 0.979 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.260 0.740 38 H 0.081 0.919 39 H 0.039 0.961 40 H 0.077 0.923 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.117 0.883 44 H 0.075 0.925 45 H 0.062 0.938 46 H 0.071 0.929 47 H 0.068 0.932 48 H 0.103 0.897 49 H 0.076 0.924 50 H 0.093 0.907 51 H 0.065 0.935 52 H 0.065 0.935 53 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.672 -18.984 9.614 21.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.312 6.312 3 C -0.028 4.028 4 C 0.022 3.978 5 N -0.320 5.320 6 C -0.377 4.377 7 H 0.044 0.956 8 C -0.207 4.207 9 N -0.580 5.580 10 Si 0.739 3.261 11 H -0.225 1.225 12 H -0.231 1.231 13 H -0.153 1.153 14 C 0.081 3.919 15 C -0.181 4.181 16 C -0.011 4.011 17 N -0.332 5.332 18 C 0.300 3.700 19 O -0.462 6.462 20 C -0.003 4.003 21 H 0.123 0.877 22 C -0.171 4.171 23 C -0.138 4.138 24 H 0.107 0.893 25 C -0.197 4.197 26 C -0.040 4.040 27 O -0.305 6.305 28 C 0.002 3.998 29 C -0.160 4.160 30 H 0.117 0.883 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.058 0.942 40 H 0.096 0.904 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.135 0.865 44 H 0.094 0.906 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.087 0.913 48 H 0.121 0.879 49 H 0.094 0.906 50 H 0.111 0.889 51 H 0.084 0.916 52 H 0.083 0.917 53 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 4.243 -19.180 8.982 21.600 hybrid contribution 0.184 1.453 -0.337 1.503 sum 4.426 -17.727 8.646 20.214 Atomic orbital electron populations 1.22816 0.80932 1.03272 0.99740 1.87834 1.20119 1.27926 1.95298 1.23142 0.96510 0.84482 0.98619 1.21339 0.90641 0.97235 0.88609 1.44141 1.74920 1.01325 1.11656 1.18278 1.29576 1.02389 0.87465 0.95627 1.26008 0.99821 0.95374 0.99513 1.70195 1.41483 1.02251 1.44065 0.86285 0.80872 0.76934 0.81975 1.22498 1.23103 1.15259 1.20398 0.92476 0.82655 0.96419 1.22314 0.99164 0.94788 1.01829 1.22121 0.92357 0.93912 0.92730 1.48154 1.10787 1.47355 1.26947 1.20813 0.90691 0.78244 0.80206 1.90657 1.54387 1.58124 1.42989 1.22959 0.92633 0.97034 0.87693 0.87739 1.23109 1.00907 0.96263 0.96850 1.22520 0.97533 0.99641 0.94070 0.89324 1.21811 0.93808 1.02838 1.01278 1.23870 0.87042 0.95811 0.97289 1.89237 1.45609 1.59191 1.36463 1.21550 0.81858 0.93972 1.02460 1.22068 1.00889 0.93818 0.99274 0.88336 0.93243 0.95463 0.96062 0.92514 0.93101 0.91335 0.93087 0.90135 0.94171 0.90449 0.87864 0.87835 0.86480 0.90623 0.91886 0.91008 0.91345 0.87903 0.90618 0.88900 0.91604 0.91670 0.95917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.96 16 2 O -0.39 -12.62 9.38 -148.98 -1.40 -14.02 16 3 C 0.05 1.81 6.28 71.98 0.45 2.27 16 4 C 0.15 5.70 4.33 86.38 0.37 6.07 16 5 N -0.60 -25.82 1.96 -677.86 -1.33 -27.15 16 6 C -0.25 -13.27 8.55 84.03 0.72 -12.55 16 7 H 0.03 1.61 7.03 -2.91 -0.02 1.59 16 8 C -0.01 -0.54 5.01 84.86 0.42 -0.12 16 9 N -0.94 -57.03 13.97 21.65 0.30 -56.73 16 10 Si 0.91 41.97 26.35 68.60 1.81 43.78 16 11 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 12 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 13 H -0.23 -9.25 5.91 99.48 0.59 -8.66 16 14 C 0.19 6.59 1.99 45.02 0.09 6.68 16 15 C -0.14 -4.44 5.31 30.67 0.16 -4.28 16 16 C 0.11 2.48 5.82 86.36 0.50 2.98 16 17 N -0.60 -17.31 2.97 -818.93 -2.43 -19.75 16 18 C 0.51 16.76 6.99 87.66 0.61 17.37 16 19 O -0.58 -24.64 15.97 15.29 0.24 -24.39 16 20 C 0.06 1.44 2.74 30.35 0.08 1.52 16 21 H 0.11 2.35 7.42 -2.39 -0.02 2.33 16 22 C -0.13 -2.15 5.34 31.61 0.17 -1.98 16 23 C -0.12 -1.61 3.71 -9.78 -0.04 -1.65 16 24 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 25 C -0.14 -1.22 8.95 71.98 0.64 -0.57 16 26 C 0.04 0.64 7.18 72.48 0.52 1.16 16 27 O -0.39 -11.28 10.91 -130.64 -1.43 -12.70 16 28 C 0.12 3.85 6.43 86.36 0.56 4.40 16 29 C -0.12 -4.45 5.30 30.67 0.16 -4.29 16 30 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.05 2.14 4.63 -2.38 -0.01 2.13 16 36 H 0.07 2.30 8.01 -2.39 -0.02 2.28 16 37 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.08 2.54 7.67 -2.38 -0.02 2.52 16 39 H 0.04 1.56 7.71 -2.38 -0.02 1.54 16 40 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.10 1.79 4.60 -2.39 -0.01 1.78 16 43 H 0.12 1.22 6.63 -2.38 -0.02 1.21 16 44 H 0.07 1.32 7.86 -2.39 -0.02 1.30 16 45 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.07 0.49 8.14 -2.38 -0.02 0.48 16 48 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 49 H 0.08 1.14 7.87 -2.39 -0.02 1.12 16 50 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 51 H 0.07 2.30 7.01 -2.39 -0.02 2.28 16 52 H 0.06 2.50 7.63 -2.39 -0.02 2.49 16 53 H 0.02 1.01 7.05 -2.39 -0.02 0.99 16 Total: -1.00 -76.00 401.84 3.21 -72.79 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.76 Total: 19.18 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: 6.68 Total: 18.99 kcal Atomic # 7 Polarization: -100.16 SS G_CDS: -3.46 Total: -103.62 kcal Atomic # 8 Polarization: -48.54 SS G_CDS: -2.58 Total: -51.11 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 1.81 Total: 43.78 kcal Total: -76.00 3.21 -72.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699690375.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.132 kcal (2) G-P(sol) polarization free energy of solvation -76.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds