Wall clock time and date at job start Tue Mar 31 2020 23:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00247 * 2 1 4 4 C 1.52996 * 109.47559 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47322 * 64.99829 * 4 3 2 6 6 C 1.36934 * 120.00215 * 270.00138 * 5 4 3 7 7 H 1.08001 * 120.00037 * 140.49458 * 6 5 4 8 8 C 1.38814 * 120.00009 * 320.50717 * 6 5 4 9 9 N 1.31618 * 120.00155 * 160.30015 * 8 6 5 10 10 Si 1.86804 * 119.99896 * 340.28623 * 8 6 5 11 11 H 1.48507 * 109.46747 * 95.38305 * 10 8 6 12 12 H 1.48500 * 109.47313 * 215.38284 * 10 8 6 13 13 H 1.48497 * 109.46978 * 335.38478 * 10 8 6 14 14 C 1.46495 * 119.99655 * 90.00480 * 5 4 3 15 15 C 1.53039 * 109.46297 * 123.49385 * 14 5 4 16 16 C 1.53190 * 109.31523 * 181.37139 * 15 14 5 17 17 N 1.46925 * 108.77329 * 305.36045 * 16 15 14 18 18 C 1.34776 * 120.63506 * 233.58833 * 17 16 15 19 19 O 1.21287 * 119.99489 * 5.62385 * 18 17 16 20 20 C 1.50702 * 120.00698 * 185.62702 * 18 17 16 21 21 H 1.09003 * 110.41324 * 51.41100 * 20 18 17 22 22 C 1.54481 * 110.36801 * 289.10550 * 20 18 17 23 23 C 1.54512 * 104.18157 * 217.25624 * 22 20 18 24 24 H 1.08995 * 110.50985 * 241.15383 * 23 22 20 25 25 C 1.52992 * 110.51306 * 118.57473 * 23 22 20 26 26 C 1.54484 * 104.06353 * 359.92914 * 23 22 20 27 27 O 1.44429 * 104.80213 * 23.98197 * 26 23 22 28 28 C 1.46925 * 118.73845 * 53.86237 * 17 16 15 29 29 C 1.53046 * 109.44850 * 243.55276 * 14 5 4 30 30 H 1.08997 * 109.47081 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46882 * 300.00066 * 1 2 3 32 32 H 1.08998 * 109.47081 * 59.99615 * 1 2 3 33 33 H 1.09008 * 109.46872 * 59.99896 * 3 2 1 34 34 H 1.09006 * 109.47182 * 300.00283 * 3 2 1 35 35 H 1.09008 * 109.46839 * 305.00014 * 4 3 2 36 36 H 1.08996 * 109.47431 * 185.00418 * 4 3 2 37 37 H 0.96996 * 120.00344 * 179.97438 * 9 8 6 38 38 H 1.09004 * 109.46342 * 3.51472 * 14 5 4 39 39 H 1.08998 * 109.49648 * 61.41310 * 15 14 5 40 40 H 1.09001 * 109.49443 * 301.32312 * 15 14 5 41 41 H 1.08997 * 109.58740 * 185.57973 * 16 15 14 42 42 H 1.09000 * 109.70740 * 65.21723 * 16 15 14 43 43 H 1.08997 * 110.51002 * 98.54489 * 22 20 18 44 44 H 1.08994 * 110.51178 * 335.96709 * 22 20 18 45 45 H 1.09004 * 109.47076 * 59.99936 * 25 23 22 46 46 H 1.09000 * 109.47355 * 179.97438 * 25 23 22 47 47 H 1.08995 * 109.47213 * 300.00225 * 25 23 22 48 48 H 1.08997 * 110.37238 * 142.81304 * 26 23 22 49 49 H 1.09002 * 110.37528 * 265.15386 * 26 23 22 50 50 H 1.08994 * 109.59020 * 65.92690 * 28 17 16 51 51 H 1.09004 * 109.58518 * 186.35105 * 28 17 16 52 52 H 1.09005 * 109.49277 * 298.57378 * 29 14 5 53 53 H 1.09005 * 109.49792 * 58.66632 * 29 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0968 -0.7969 -1.3369 7 1 3.7923 -1.3116 -2.2362 8 6 4.6108 -1.5155 -0.2662 9 7 4.3804 -2.8078 -0.1696 10 14 5.6300 -0.6485 1.0374 11 1 4.7571 -0.2711 2.1780 12 1 6.7018 -1.5590 1.5143 13 1 6.2410 0.5737 0.4561 14 6 4.2864 1.4007 -2.4147 15 6 5.7179 1.1194 -2.8772 16 6 6.0509 2.0201 -4.0708 17 7 5.0314 1.8237 -5.1103 18 6 5.3880 1.5060 -6.3706 19 8 6.5503 1.2796 -6.6331 20 6 4.3427 1.4322 -7.4537 21 1 3.7431 2.3424 -7.4660 22 6 3.4398 0.1960 -7.2462 23 6 3.1579 -0.3114 -8.6781 24 1 2.0893 -0.2803 -8.8908 25 6 3.6982 -1.7312 -8.8599 26 6 3.9221 0.6788 -9.5846 27 8 4.9632 1.2213 -8.7432 28 6 3.6160 1.9861 -4.7513 29 6 3.3100 1.0804 -3.5488 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.6886 1.8464 0.8901 34 1 1.6886 1.8464 -0.8900 35 1 3.8514 0.5682 0.8410 36 1 3.9785 2.1765 0.0890 37 1 4.7398 -3.3100 0.5783 38 1 4.1931 2.4517 -2.1411 39 1 5.8055 0.0744 -3.1743 40 1 6.4109 1.3255 -2.0614 41 1 7.0315 1.7551 -4.4661 42 1 6.0541 3.0632 -3.7545 43 1 2.5109 0.4803 -6.7519 44 1 3.9621 -0.5655 -6.6671 45 1 3.2145 -2.3982 -8.1463 46 1 3.4901 -2.0721 -9.8741 47 1 4.7746 -1.7349 -8.6886 48 1 4.3567 0.1557 -10.4364 49 1 3.2571 1.4727 -9.9249 50 1 3.4228 3.0258 -4.4876 51 1 2.9895 1.6987 -5.5958 52 1 3.4203 0.0357 -3.8396 53 1 2.2890 1.2587 -3.2110 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699690378.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:55 Heat of formation + Delta-G solvation = -114.834386 kcal Electronic energy + Delta-G solvation = -32324.551286 eV Core-core repulsion = 28196.609435 eV Total energy + Delta-G solvation = -4127.941851 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.70102 -40.06827 -39.12963 -38.25335 -36.65850 -34.43470 -33.90677 -33.05995 -32.18731 -30.83076 -29.86630 -27.41797 -27.12395 -26.69966 -25.14226 -24.45486 -23.70258 -22.71895 -21.64624 -21.23743 -20.06148 -18.67712 -18.26514 -17.54462 -17.47849 -17.10257 -17.02164 -16.45094 -16.13568 -16.02374 -15.88837 -15.66366 -15.58543 -15.04520 -14.89157 -14.65675 -14.61502 -14.25839 -14.03258 -13.83142 -13.66918 -13.48954 -13.38966 -13.36503 -12.95302 -12.86279 -12.72511 -12.46430 -12.28201 -12.17277 -12.13637 -12.10838 -11.85996 -11.81859 -11.70262 -11.56625 -11.30799 -11.11539 -10.94725 -10.60158 -10.48902 -10.28451 -9.64778 -8.59383 -8.02816 -5.41593 1.33049 1.43340 1.49208 1.51882 1.80131 2.52383 2.98706 3.13861 3.19953 3.31564 3.47032 3.58931 3.78931 3.90474 3.99105 4.08864 4.12204 4.19714 4.22234 4.32215 4.40572 4.45225 4.46295 4.56489 4.58783 4.60811 4.63575 4.65711 4.70339 4.74580 4.75075 4.80336 4.82039 4.83061 4.87639 4.88832 4.92326 5.04893 5.07583 5.09168 5.15770 5.19990 5.30371 5.46000 5.58390 5.63284 5.79284 6.09980 6.33745 6.38653 6.65255 7.11008 7.16048 7.80119 8.18300 9.18077 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013064 B = 0.003443 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.751094 B = 8131.119885 C = 8575.086626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.400 6.400 3 C 0.050 3.950 4 C 0.123 3.877 5 N -0.604 5.604 6 C -0.203 4.203 7 H 0.031 0.969 8 C -0.021 4.021 9 N -0.959 5.959 10 Si 0.935 3.065 11 H -0.283 1.283 12 H -0.324 1.324 13 H -0.250 1.250 14 C 0.174 3.826 15 C -0.130 4.130 16 C 0.121 3.879 17 N -0.602 5.602 18 C 0.510 3.490 19 O -0.583 6.583 20 C 0.064 3.936 21 H 0.130 0.870 22 C -0.142 4.142 23 C -0.119 4.119 24 H 0.120 0.880 25 C -0.147 4.147 26 C 0.041 3.959 27 O -0.384 6.384 28 C 0.106 3.894 29 C -0.129 4.129 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.029 0.971 36 H 0.092 0.908 37 H 0.253 0.747 38 H 0.091 0.909 39 H 0.030 0.970 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.117 0.883 44 H 0.050 0.950 45 H 0.055 0.945 46 H 0.077 0.923 47 H 0.032 0.968 48 H 0.100 0.900 49 H 0.091 0.909 50 H 0.105 0.895 51 H 0.106 0.894 52 H 0.032 0.968 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.102 15.434 -13.021 22.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.319 6.319 3 C -0.029 4.029 4 C -0.002 4.002 5 N -0.326 5.326 6 C -0.333 4.333 7 H 0.048 0.952 8 C -0.216 4.216 9 N -0.605 5.605 10 Si 0.766 3.234 11 H -0.211 1.211 12 H -0.254 1.254 13 H -0.173 1.173 14 C 0.068 3.932 15 C -0.170 4.170 16 C -0.001 4.001 17 N -0.335 5.335 18 C 0.299 3.701 19 O -0.462 6.462 20 C 0.004 3.996 21 H 0.147 0.853 22 C -0.180 4.180 23 C -0.137 4.137 24 H 0.138 0.862 25 C -0.204 4.204 26 C -0.035 4.035 27 O -0.303 6.303 28 C -0.015 4.015 29 C -0.169 4.169 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.047 0.953 36 H 0.110 0.890 37 H 0.062 0.938 38 H 0.109 0.891 39 H 0.049 0.951 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.117 0.883 43 H 0.135 0.865 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.096 0.904 47 H 0.051 0.949 48 H 0.118 0.882 49 H 0.109 0.891 50 H 0.124 0.876 51 H 0.124 0.876 52 H 0.051 0.949 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.125 15.087 -13.130 21.984 hybrid contribution 0.609 -0.802 1.253 1.608 sum -8.516 14.285 -11.877 20.436 Atomic orbital electron populations 1.22767 0.81448 1.02226 1.00245 1.88229 1.19738 1.28730 1.95242 1.23250 0.95482 0.84352 0.99812 1.21508 0.92455 0.97414 0.88798 1.44217 1.76554 1.02290 1.09514 1.18153 1.32601 0.82025 1.00544 0.95158 1.25946 0.99812 0.95192 1.00635 1.69990 1.48548 1.09306 1.32666 0.85979 0.78690 0.78596 0.80115 1.21075 1.25449 1.17343 1.20612 0.91404 0.94391 0.86763 1.22178 0.99357 0.98727 0.96726 1.21590 0.91480 1.00304 0.86763 1.48145 1.09042 1.68351 1.07961 1.20918 0.89421 0.75701 0.84081 1.90667 1.22200 1.50702 1.82667 1.23019 0.91734 1.01409 0.83482 0.85272 1.23148 1.00245 0.95818 0.98804 1.22573 1.02461 0.95591 0.93078 0.86205 1.21858 0.99998 0.95796 1.02792 1.23828 0.89603 0.96286 0.93736 1.89259 1.35395 1.84805 1.20854 1.22278 0.79360 1.01462 0.98426 1.22269 1.00339 0.98794 0.95516 0.91012 0.93363 0.93272 0.92826 0.92258 0.95293 0.88997 0.93837 0.89142 0.95102 0.92042 0.91686 0.88289 0.86485 0.93115 0.92571 0.90380 0.94889 0.88233 0.89088 0.87649 0.87650 0.94897 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 11.01 113.37 1.25 2.13 16 2 O -0.40 -16.39 10.18 -148.98 -1.52 -17.91 16 3 C 0.05 1.62 6.28 71.98 0.45 2.07 16 4 C 0.12 4.64 4.88 86.38 0.42 5.06 16 5 N -0.60 -25.38 1.97 -677.89 -1.34 -26.72 16 6 C -0.20 -11.01 8.09 84.03 0.68 -10.33 16 7 H 0.03 1.90 7.20 -2.91 -0.02 1.88 16 8 C -0.02 -1.25 5.34 84.86 0.45 -0.80 16 9 N -0.96 -61.82 13.97 21.65 0.30 -61.52 16 10 Si 0.94 46.90 24.95 68.60 1.71 48.61 16 11 H -0.28 -13.74 6.71 99.48 0.67 -13.08 16 12 H -0.32 -17.11 7.11 99.48 0.71 -16.40 16 13 H -0.25 -11.42 7.11 99.48 0.71 -10.71 16 14 C 0.17 5.66 2.59 45.02 0.12 5.78 16 15 C -0.13 -4.60 5.25 30.67 0.16 -4.44 16 16 C 0.12 3.54 6.44 86.36 0.56 4.09 16 17 N -0.60 -16.31 2.97 -818.08 -2.43 -18.74 16 18 C 0.51 16.06 6.97 87.66 0.61 16.67 16 19 O -0.58 -24.40 15.99 15.13 0.24 -24.16 16 20 C 0.06 1.47 2.76 30.35 0.08 1.56 16 21 H 0.13 1.95 7.78 -2.39 -0.02 1.93 16 22 C -0.14 -2.86 5.30 31.61 0.17 -2.69 16 23 C -0.12 -1.90 3.72 -9.78 -0.04 -1.93 16 24 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 25 C -0.15 -2.80 8.94 71.98 0.64 -2.16 16 26 C 0.04 0.69 7.19 72.49 0.52 1.21 16 27 O -0.38 -10.43 10.93 -130.80 -1.43 -11.86 16 28 C 0.11 2.10 6.09 86.51 0.53 2.63 16 29 C -0.13 -3.68 5.37 30.82 0.17 -3.51 16 30 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.03 1.30 3.32 -2.38 -0.01 1.29 16 36 H 0.09 2.73 7.89 -2.39 -0.02 2.71 16 37 H 0.25 15.75 8.31 -92.71 -0.77 14.98 16 38 H 0.09 2.30 7.77 -2.39 -0.02 2.28 16 39 H 0.03 1.36 7.64 -2.39 -0.02 1.34 16 40 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.06 2.20 7.00 -2.39 -0.02 2.18 16 42 H 0.10 2.20 8.14 -2.39 -0.02 2.19 16 43 H 0.12 1.64 6.63 -2.39 -0.02 1.63 16 44 H 0.05 1.40 7.45 -2.39 -0.02 1.38 16 45 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.10 1.53 7.87 -2.39 -0.02 1.51 16 49 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 51 H 0.11 1.57 4.07 -2.38 -0.01 1.56 16 52 H 0.03 1.21 7.20 -2.38 -0.02 1.19 16 53 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 Total: -1.00 -83.85 402.24 3.16 -80.69 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.84 Total: 16.26 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 6.77 Total: 15.34 kcal Atomic # 7 Polarization: -103.52 SS G_CDS: -3.46 Total: -106.98 kcal Atomic # 8 Polarization: -51.22 SS G_CDS: -2.70 Total: -53.93 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.71 Total: 48.61 kcal Total: -83.85 3.16 -80.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699690378.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.146 kcal (2) G-P(sol) polarization free energy of solvation -83.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds