Wall clock time and date at job start Tue Mar 31 2020 23:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 110.41703 * 2 1 4 4 C 1.54484 * 110.36798 * 122.30759 * 2 1 3 5 5 C 1.54507 * 104.05648 * 142.80950 * 4 2 1 6 6 C 1.54478 * 104.06809 * 359.97438 * 5 4 2 7 7 H 1.09003 * 110.36822 * 94.96336 * 6 5 4 8 8 C 1.53001 * 110.37447 * 217.18841 * 6 5 4 9 9 C 1.53002 * 109.46986 * 185.00000 * 8 6 5 10 10 C 1.50698 * 109.47115 * 180.02562 * 9 8 6 11 11 O 1.21281 * 119.99689 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00254 * 180.02562 * 10 9 8 13 13 C 1.46919 * 120.63129 * 180.02562 * 12 10 9 14 14 C 1.53186 * 108.77954 * 126.40868 * 13 12 10 15 15 C 1.53046 * 109.31207 * 54.63337 * 14 13 12 16 16 O 1.42897 * 109.46160 * 58.65685 * 15 14 13 17 17 C 1.53003 * 109.45870 * 178.61857 * 15 14 13 18 18 N 1.46496 * 109.46928 * 179.97438 * 17 15 14 19 19 C 1.36934 * 120.00097 * 179.97438 * 18 17 15 20 20 H 1.08003 * 120.00212 * 0.02562 * 19 18 17 21 21 C 1.38815 * 120.00322 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00138 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99866 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46685 * 90.00189 * 23 21 19 25 25 H 1.48499 * 109.47273 * 210.00164 * 23 21 19 26 26 H 1.48503 * 109.46929 * 330.00359 * 23 21 19 27 27 C 1.53046 * 109.53579 * 298.63381 * 15 14 13 28 28 C 1.46927 * 120.62692 * 0.02562 * 12 10 9 29 29 O 1.44424 * 110.36857 * 237.68891 * 2 1 3 30 30 H 1.08999 * 109.46968 * 297.69488 * 1 2 3 31 31 H 1.08998 * 109.46961 * 57.68901 * 1 2 3 32 32 H 1.09004 * 109.47372 * 177.69239 * 1 2 3 33 33 H 1.08998 * 110.51138 * 24.16787 * 4 2 1 34 34 H 1.08999 * 110.50885 * 261.44975 * 4 2 1 35 35 H 1.09001 * 110.51314 * 241.35256 * 5 4 2 36 36 H 1.09001 * 110.62615 * 118.70200 * 5 4 2 37 37 H 1.09006 * 109.46629 * 65.00030 * 8 6 5 38 38 H 1.08998 * 109.46791 * 304.99872 * 8 6 5 39 39 H 1.08998 * 109.47230 * 59.99875 * 9 8 6 40 40 H 1.09000 * 109.46827 * 299.99903 * 9 8 6 41 41 H 1.09002 * 109.59216 * 6.61793 * 13 12 10 42 42 H 1.09004 * 109.70105 * 246.26484 * 13 12 10 43 43 H 1.09004 * 109.49658 * 294.68126 * 14 13 12 44 44 H 1.08997 * 109.52704 * 174.59556 * 14 13 12 45 45 H 0.96700 * 114.00001 * 180.02562 * 16 15 14 46 46 H 1.09004 * 109.46958 * 299.99637 * 17 15 14 47 47 H 1.09001 * 109.47420 * 59.99652 * 17 15 14 48 48 H 0.97006 * 120.00266 * 0.02562 * 18 17 15 49 49 H 0.97001 * 120.00101 * 180.02562 * 22 21 19 50 50 H 1.09001 * 109.49347 * 181.31682 * 27 15 14 51 51 H 1.08998 * 109.49687 * 301.41384 * 27 15 14 52 52 H 1.09000 * 109.58699 * 353.37880 * 28 12 10 53 53 H 1.08997 * 109.58189 * 113.66082 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0677 -0.7740 1.2240 5 6 3.3177 -1.5057 0.6859 6 6 3.3869 -1.0877 -0.7996 7 1 4.0535 -0.2341 -0.9229 8 6 3.8597 -2.2602 -1.6614 9 6 4.0404 -1.7908 -3.1064 10 6 4.5055 -2.9458 -3.9553 11 8 4.6761 -4.0368 -3.4538 12 7 4.7328 -2.7661 -5.2715 13 6 5.1860 -3.8825 -6.1122 14 6 4.2394 -4.0142 -7.3094 15 6 4.1563 -2.6714 -8.0390 16 8 5.4620 -2.2819 -8.4694 17 6 3.2385 -2.8083 -9.2555 18 7 3.1583 -1.5230 -9.9538 19 6 2.3897 -1.4027 -11.0807 20 1 1.8423 -2.2554 -11.4545 21 6 2.3141 -0.1849 -11.7426 22 7 1.5750 -0.0692 -12.8254 23 14 3.2604 1.2901 -11.0957 24 1 4.6110 1.3209 -11.7123 25 1 2.5303 2.5365 -11.4403 26 1 3.3920 1.1854 -9.6202 27 6 3.5931 -1.6087 -7.0925 28 6 4.5322 -1.4499 -5.8929 29 8 2.0327 -0.7237 -1.1443 30 1 -0.3633 0.4776 0.9099 31 1 -0.3633 0.5493 -0.8685 32 1 -0.3634 -1.0269 -0.0414 33 1 1.3275 -1.4919 1.5773 34 1 2.3429 -0.0839 2.0216 35 1 3.1954 -2.5853 0.7732 36 1 4.2119 -1.1794 1.2170 37 1 3.1174 -3.0577 -1.6285 38 1 4.8101 -2.6323 -1.2787 39 1 4.7826 -0.9932 -3.1392 40 1 3.0900 -1.4186 -3.4890 41 1 5.1724 -4.8055 -5.5325 42 1 6.1984 -3.6884 -6.4665 43 1 3.2475 -4.3000 -6.9592 44 1 4.6180 -4.7758 -7.9911 45 1 5.4853 -1.4375 -8.9402 46 1 3.6400 -3.5644 -9.9303 47 1 2.2425 -3.1061 -8.9277 48 1 3.6503 -0.7572 -9.6183 49 1 1.5224 0.7816 -13.2882 50 1 3.5123 -0.6581 -7.6198 51 1 2.6074 -1.9172 -6.7445 52 1 4.0873 -0.7678 -5.1685 53 1 5.4911 -1.0536 -6.2269 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700308515.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:36 Heat of formation + Delta-G solvation = -154.623114 kcal Electronic energy + Delta-G solvation = -30763.309393 eV Core-core repulsion = 26633.642172 eV Total energy + Delta-G solvation = -4129.667220 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.51495 -40.53889 -39.75944 -36.90601 -35.85335 -34.98983 -33.65593 -33.14940 -32.86281 -32.00201 -31.39553 -28.75701 -27.40379 -25.37354 -24.52323 -24.05788 -22.97193 -22.23594 -21.71920 -21.40487 -20.01763 -19.93715 -18.24033 -17.54493 -17.36088 -17.02277 -16.84577 -16.68601 -16.26495 -16.11902 -15.90586 -15.59791 -15.06271 -14.92709 -14.79800 -14.66754 -14.46937 -14.36571 -14.10924 -13.90859 -13.59538 -13.48137 -13.35851 -13.15973 -13.03197 -12.85118 -12.75489 -12.59640 -12.47942 -12.29952 -12.21817 -12.12057 -12.07949 -11.89145 -11.76563 -11.65330 -11.48244 -11.37969 -11.02396 -10.91045 -10.70311 -10.64668 -9.65208 -9.35185 -8.03298 -5.39422 1.36612 1.44406 1.51004 1.60935 1.99785 2.48714 2.90443 3.18951 3.30470 3.41669 3.45172 3.68246 3.71646 3.76180 3.83433 3.95654 3.98169 4.04587 4.08754 4.14897 4.28435 4.33021 4.36391 4.44494 4.49469 4.54017 4.59829 4.66230 4.66643 4.72278 4.75127 4.81267 4.83159 4.86218 4.94882 4.96857 4.97923 5.02997 5.09429 5.12067 5.16962 5.20760 5.26440 5.28610 5.31545 5.52383 5.72794 6.03698 6.18081 6.41002 6.70694 7.05261 7.14669 7.76541 7.97978 9.18118 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012323 B = 0.002507 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.655468 B =11166.984171 C =12701.193279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 H 0.077 0.923 4 C -0.148 4.148 5 C -0.152 4.152 6 C 0.074 3.926 7 H 0.085 0.915 8 C -0.091 4.091 9 C -0.132 4.132 10 C 0.511 3.489 11 O -0.586 6.586 12 N -0.608 5.608 13 C 0.122 3.878 14 C -0.112 4.112 15 C 0.136 3.864 16 O -0.558 6.558 17 C 0.131 3.869 18 N -0.748 5.748 19 C -0.240 4.240 20 H 0.049 0.951 21 C -0.066 4.066 22 N -0.985 5.985 23 Si 0.959 3.041 24 H -0.274 1.274 25 H -0.299 1.299 26 H -0.239 1.239 27 C -0.157 4.157 28 C 0.115 3.885 29 O -0.394 6.394 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.055 0.945 38 H 0.084 0.916 39 H 0.118 0.882 40 H 0.102 0.898 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.381 0.619 46 H 0.025 0.975 47 H 0.029 0.971 48 H 0.367 0.633 49 H 0.258 0.742 50 H 0.079 0.921 51 H 0.074 0.926 52 H 0.109 0.891 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.788 1.518 31.336 32.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.004 3.996 3 H 0.095 0.905 4 C -0.186 4.186 5 C -0.190 4.190 6 C 0.016 3.984 7 H 0.103 0.897 8 C -0.129 4.129 9 C -0.171 4.171 10 C 0.301 3.699 11 O -0.467 6.467 12 N -0.340 5.340 13 C 0.000 4.000 14 C -0.151 4.151 15 C 0.095 3.905 16 O -0.365 6.365 17 C 0.005 3.995 18 N -0.395 5.395 19 C -0.371 4.371 20 H 0.068 0.932 21 C -0.257 4.257 22 N -0.635 5.635 23 Si 0.785 3.215 24 H -0.200 1.200 25 H -0.226 1.226 26 H -0.163 1.163 27 C -0.196 4.196 28 C -0.007 4.007 29 O -0.314 6.314 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.074 0.926 38 H 0.102 0.898 39 H 0.136 0.864 40 H 0.120 0.880 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.105 0.895 45 H 0.230 0.770 46 H 0.043 0.957 47 H 0.047 0.953 48 H 0.202 0.798 49 H 0.067 0.933 50 H 0.098 0.902 51 H 0.092 0.908 52 H 0.127 0.873 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.785 0.247 31.530 32.253 hybrid contribution -0.181 1.167 -0.907 1.489 sum 6.604 1.414 30.623 31.359 Atomic orbital electron populations 1.21828 0.93050 1.02502 1.03070 1.23155 0.95656 0.95777 0.85005 0.90524 1.23005 0.97438 0.99924 0.98242 1.22996 0.99447 1.01451 0.95071 1.23099 0.84454 0.96841 0.93962 0.89722 1.21343 1.01954 0.96730 0.92878 1.21702 1.04133 0.96448 0.94857 1.21259 0.76039 0.90403 0.82173 1.90652 1.54416 1.28618 1.73003 1.48229 1.66131 1.11737 1.07939 1.21397 0.97771 0.90289 0.90562 1.21810 1.01039 0.95450 0.96784 1.21254 0.82514 0.95126 0.91591 1.86430 1.28179 1.44245 1.77664 1.21426 0.97487 0.87699 0.92927 1.42485 1.57687 1.09054 1.30289 1.18957 1.20429 0.96335 1.01332 0.93248 1.25627 1.01314 1.01106 0.97662 1.69904 1.45727 1.26020 1.21871 0.85372 0.78169 0.78219 0.79773 1.20026 1.22560 1.16279 1.22522 1.00034 1.00121 0.96928 1.21820 1.00376 0.83584 0.94930 1.89149 1.27860 1.74898 1.39494 0.89347 0.92508 0.92729 0.90776 0.88842 0.91196 0.88807 0.92629 0.89781 0.86412 0.88005 0.90002 0.90543 0.90262 0.89514 0.76992 0.95734 0.95299 0.79787 0.93277 0.90210 0.90765 0.87280 0.89639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.52 71.98 0.69 -1.13 16 2 C 0.06 0.81 3.92 31.10 0.12 0.93 16 3 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 4 C -0.15 -1.52 6.63 31.61 0.21 -1.31 16 5 C -0.15 -1.72 6.63 31.61 0.21 -1.51 16 6 C 0.07 1.05 3.25 31.10 0.10 1.15 16 7 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 8 C -0.09 -1.58 4.13 30.60 0.13 -1.46 16 9 C -0.13 -2.24 3.98 29.85 0.12 -2.12 16 10 C 0.51 12.22 7.70 87.66 0.67 12.90 16 11 O -0.59 -18.24 15.40 -3.03 -0.05 -18.29 16 12 N -0.61 -13.65 2.97 -818.97 -2.43 -16.08 16 13 C 0.12 2.94 6.19 86.36 0.53 3.47 16 14 C -0.11 -2.81 5.11 30.67 0.16 -2.65 16 15 C 0.14 3.78 0.71 -10.76 -0.01 3.78 16 16 O -0.56 -15.39 11.71 -148.98 -1.74 -17.13 16 17 C 0.13 4.83 5.40 86.38 0.47 5.30 16 18 N -0.75 -32.61 4.87 -343.45 -1.67 -34.28 16 19 C -0.24 -13.40 10.47 84.03 0.88 -12.52 16 20 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 21 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 22 N -0.99 -62.49 13.97 21.65 0.30 -62.19 16 23 Si 0.96 42.58 27.74 68.60 1.90 44.48 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 25 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.24 -8.93 6.52 99.48 0.65 -8.29 16 27 C -0.16 -3.83 4.93 30.67 0.15 -3.68 16 28 C 0.12 2.18 6.10 86.36 0.53 2.71 16 29 O -0.39 -7.34 10.82 -148.98 -1.61 -8.96 16 30 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.07 0.78 7.87 -2.39 -0.02 0.76 16 34 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.07 0.90 7.87 -2.39 -0.02 0.88 16 36 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.05 1.22 8.10 -2.38 -0.02 1.21 16 38 H 0.08 1.42 8.10 -2.39 -0.02 1.40 16 39 H 0.12 1.38 7.94 -2.39 -0.02 1.36 16 40 H 0.10 1.76 7.56 -2.39 -0.02 1.74 16 41 H 0.08 2.11 7.01 -2.39 -0.02 2.09 16 42 H 0.08 1.83 7.81 -2.38 -0.02 1.81 16 43 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 44 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.38 9.77 7.85 -74.06 -0.58 9.19 16 46 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 47 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.37 14.42 3.44 -92.70 -0.32 14.10 16 49 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 50 H 0.08 2.05 6.82 -2.39 -0.02 2.03 16 51 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 52 H 0.11 1.55 5.93 -2.39 -0.01 1.54 16 53 H 0.09 1.51 7.82 -2.39 -0.02 1.49 16 Total: -1.00 -73.67 406.57 0.05 -73.62 By element: Atomic # 1 Polarization: 38.35 SS G_CDS: -0.06 Total: 38.29 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: 5.42 Total: 0.54 kcal Atomic # 7 Polarization: -108.75 SS G_CDS: -3.80 Total: -112.55 kcal Atomic # 8 Polarization: -40.97 SS G_CDS: -3.40 Total: -44.38 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.90 Total: 44.48 kcal Total: -73.67 0.05 -73.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700308515.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.007 kcal (2) G-P(sol) polarization free energy of solvation -73.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds