Wall clock time and date at job start Tue Mar 31 2020 23:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 110.27184 * 2 1 4 4 C 1.54941 * 110.30946 * 122.08769 * 2 1 3 5 5 C 1.55309 * 100.93922 * 155.46122 * 4 2 1 6 6 C 1.54382 * 102.25483 * 325.86482 * 5 4 2 7 7 H 1.08997 * 109.83138 * 261.75597 * 6 5 4 8 8 C 1.52996 * 109.82812 * 140.87167 * 6 5 4 9 9 C 1.52998 * 109.46929 * 175.18960 * 8 6 5 10 10 C 1.50706 * 109.47348 * 179.97438 * 9 8 6 11 11 O 1.21283 * 119.99503 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00081 * 179.72561 * 10 9 8 13 13 C 1.46920 * 120.63315 * 359.71657 * 12 10 9 14 14 C 1.53624 * 108.54629 * 126.37007 * 13 12 10 15 15 C 1.53039 * 109.23883 * 54.85831 * 14 13 12 16 16 O 1.42895 * 109.44985 * 58.52420 * 15 14 13 17 17 C 1.53002 * 109.46178 * 178.49437 * 15 14 13 18 18 N 1.46499 * 109.46730 * 305.06850 * 17 15 14 19 19 C 1.36935 * 119.99781 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00332 * 0.02562 * 19 18 17 21 21 C 1.38818 * 120.00209 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99677 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00097 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47559 * 90.00117 * 23 21 19 25 25 H 1.48506 * 109.46844 * 209.99822 * 23 21 19 26 26 H 1.48498 * 109.47398 * 329.99732 * 23 21 19 27 27 C 1.53044 * 109.53916 * 298.51220 * 15 14 13 28 28 C 1.46927 * 120.62932 * 180.02562 * 12 10 9 29 29 O 1.43243 * 107.66123 * 21.31569 * 6 5 4 30 30 H 1.09001 * 109.47425 * 297.90855 * 1 2 3 31 31 H 1.09006 * 109.47074 * 57.91049 * 1 2 3 32 32 H 1.09004 * 109.47173 * 177.91075 * 1 2 3 33 33 H 1.08992 * 111.12654 * 37.54251 * 4 2 1 34 34 H 1.09004 * 111.16308 * 273.39450 * 4 2 1 35 35 H 1.09008 * 110.84780 * 207.67843 * 5 4 2 36 36 H 1.09004 * 111.02199 * 84.14024 * 5 4 2 37 37 H 1.09000 * 109.47441 * 55.19050 * 8 6 5 38 38 H 1.09002 * 109.47087 * 295.18496 * 8 6 5 39 39 H 1.09001 * 109.47671 * 60.00109 * 9 8 6 40 40 H 1.08998 * 109.47454 * 300.00107 * 9 8 6 41 41 H 1.08997 * 109.58983 * 246.20545 * 13 12 10 42 42 H 1.09010 * 109.58497 * 6.62960 * 13 12 10 43 43 H 1.08997 * 109.63248 * 294.86961 * 14 13 12 44 44 H 1.08999 * 109.46210 * 174.73977 * 14 13 12 45 45 H 0.96698 * 113.99577 * 59.94228 * 16 15 14 46 46 H 1.09001 * 109.46973 * 65.06485 * 17 15 14 47 47 H 1.09000 * 109.47302 * 185.06489 * 17 15 14 48 48 H 0.97001 * 120.00354 * 359.97438 * 18 17 15 49 49 H 0.96995 * 119.99906 * 179.97438 * 22 21 19 50 50 H 1.09004 * 109.49647 * 301.41628 * 27 15 14 51 51 H 1.08997 * 109.49869 * 181.31547 * 27 15 14 52 52 H 1.09006 * 109.58344 * 353.36569 * 28 12 10 53 53 H 1.08996 * 109.58922 * 113.79677 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0225 0.0000 4 6 2.0677 -0.7719 1.2311 5 6 3.4710 -1.1995 0.7210 6 6 3.2139 -1.4399 -0.7822 7 1 3.0683 -2.5042 -0.9669 8 6 4.4018 -0.9290 -1.6000 9 6 4.1934 -1.2783 -3.0749 10 6 5.3631 -0.7746 -3.8807 11 8 6.2735 -0.1930 -3.3295 12 7 5.3999 -0.9748 -5.2129 13 6 4.3101 -1.6878 -5.8931 14 6 3.7943 -0.8094 -7.0430 15 6 4.9646 -0.4339 -7.9549 16 8 5.5753 -1.6232 -8.4594 17 6 4.4505 0.4101 -9.1229 18 7 3.3789 -0.3124 -9.8128 19 6 2.7617 0.2508 -10.8977 20 1 3.0651 1.2274 -11.2450 21 6 1.7468 -0.4340 -11.5519 22 7 1.3780 -1.6248 -11.1296 23 14 0.9053 0.3339 -13.0322 24 1 1.6275 -0.0561 -14.2698 25 1 -0.4986 -0.1443 -13.1069 26 1 0.9180 1.8127 -12.8970 27 6 5.9955 0.3705 -7.1596 28 6 6.5337 -0.4902 -6.0118 29 8 2.0301 -0.7178 -1.1416 30 1 -0.3634 0.4810 0.9081 31 1 -0.3633 0.5460 -0.8707 32 1 -0.3634 -1.0270 -0.0375 33 1 1.4481 -1.6411 1.4512 34 1 2.1479 -0.1193 2.1005 35 1 3.7985 -2.1170 1.2100 36 1 4.1999 -0.4024 0.8674 37 1 5.3182 -1.3978 -1.2416 38 1 4.4800 0.1526 -1.4904 39 1 3.2770 -0.8095 -3.4335 40 1 4.1150 -2.3600 -3.1847 41 1 4.6829 -2.6321 -6.2900 42 1 3.5021 -1.8794 -5.1870 43 1 3.3435 0.0966 -6.6380 44 1 3.0494 -1.3616 -7.6160 45 1 4.9789 -2.1832 -8.9750 46 1 4.0652 1.3571 -8.7449 47 1 5.2665 0.6019 -9.8195 48 1 3.1067 -1.1897 -9.5012 49 1 0.6686 -2.1032 -11.5864 50 1 5.5239 1.2654 -6.7534 51 1 6.8175 0.6576 -7.8153 52 1 7.1934 0.1089 -5.3839 53 1 7.0838 -1.3389 -6.4181 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700308517.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:44 Heat of formation + Delta-G solvation = -157.431754 kcal Electronic energy + Delta-G solvation = -30713.110832 eV Core-core repulsion = 26583.321820 eV Total energy + Delta-G solvation = -4129.789012 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.49137 -40.56366 -39.69226 -36.80108 -35.78964 -34.93627 -33.50413 -33.17069 -32.69050 -31.75931 -31.36999 -28.49457 -27.32938 -25.57490 -24.50537 -24.20405 -23.00717 -22.42111 -21.57500 -21.14694 -19.89445 -19.44815 -18.26331 -17.94618 -17.32271 -16.99388 -16.77439 -16.67398 -16.35007 -15.88236 -15.70346 -15.26442 -15.11919 -15.00208 -14.80782 -14.59861 -14.39666 -14.30754 -14.12183 -13.80785 -13.54965 -13.26174 -13.21992 -13.16096 -12.99092 -12.81186 -12.74139 -12.60258 -12.54788 -12.30109 -12.22706 -12.08540 -12.03369 -11.98314 -11.75774 -11.66875 -11.59746 -11.30907 -10.98115 -10.88167 -10.68381 -10.41516 -9.64155 -9.02795 -7.97312 -5.25462 1.47948 1.48408 1.56694 1.60955 2.00759 2.54486 2.86713 3.25002 3.39841 3.45145 3.62048 3.64706 3.74897 3.82408 3.88702 3.92183 4.03457 4.12502 4.17118 4.22552 4.28024 4.33872 4.37872 4.43822 4.50867 4.55972 4.62767 4.69529 4.73804 4.76274 4.78360 4.82267 4.83691 4.89337 4.92885 4.97079 4.98666 5.05911 5.07037 5.15267 5.16871 5.24571 5.32176 5.32216 5.37688 5.48693 5.53743 6.19865 6.24957 6.41489 6.74573 7.14528 7.32986 8.03325 8.29570 9.25356 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012148 B = 0.002388 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.294140 B =11724.015900 C =13470.003209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 H 0.063 0.937 4 C -0.145 4.145 5 C -0.150 4.150 6 C 0.078 3.922 7 H 0.091 0.909 8 C -0.105 4.105 9 C -0.131 4.131 10 C 0.511 3.489 11 O -0.586 6.586 12 N -0.608 5.608 13 C 0.118 3.882 14 C -0.150 4.150 15 C 0.139 3.861 16 O -0.561 6.561 17 C 0.128 3.872 18 N -0.736 5.736 19 C -0.248 4.248 20 H 0.070 0.930 21 C -0.067 4.067 22 N -0.962 5.962 23 Si 0.969 3.031 24 H -0.288 1.288 25 H -0.294 1.294 26 H -0.274 1.274 27 C -0.111 4.111 28 C 0.122 3.878 29 O -0.397 6.397 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.099 0.901 40 H 0.114 0.886 41 H 0.082 0.918 42 H 0.106 0.894 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.382 0.618 46 H 0.024 0.976 47 H 0.021 0.979 48 H 0.378 0.622 49 H 0.253 0.747 50 H 0.078 0.922 51 H 0.087 0.913 52 H 0.083 0.917 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.447 -1.447 25.858 26.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.006 3.994 3 H 0.081 0.919 4 C -0.183 4.183 5 C -0.188 4.188 6 C 0.021 3.979 7 H 0.109 0.891 8 C -0.143 4.143 9 C -0.170 4.170 10 C 0.301 3.699 11 O -0.467 6.467 12 N -0.340 5.340 13 C -0.004 4.004 14 C -0.189 4.189 15 C 0.098 3.902 16 O -0.368 6.368 17 C 0.001 3.999 18 N -0.381 5.381 19 C -0.380 4.380 20 H 0.088 0.912 21 C -0.260 4.260 22 N -0.612 5.612 23 Si 0.798 3.202 24 H -0.215 1.215 25 H -0.220 1.220 26 H -0.199 1.199 27 C -0.150 4.150 28 C 0.000 4.000 29 O -0.317 6.317 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.118 0.882 40 H 0.132 0.868 41 H 0.100 0.900 42 H 0.124 0.876 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.231 0.769 46 H 0.042 0.958 47 H 0.039 0.961 48 H 0.212 0.788 49 H 0.062 0.938 50 H 0.097 0.903 51 H 0.106 0.894 52 H 0.102 0.898 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.318 -0.760 26.121 26.486 hybrid contribution -1.050 0.063 -1.483 1.818 sum 3.268 -0.697 24.637 24.863 Atomic orbital electron populations 1.21883 0.93136 1.02821 1.02794 1.23151 0.95402 0.95522 0.85289 0.91894 1.23298 0.95792 1.01154 0.98014 1.23177 0.98021 1.03601 0.93952 1.22851 0.84364 0.96392 0.94339 0.89116 1.21672 0.98121 1.01471 0.93059 1.21674 0.96126 1.03878 0.95361 1.21281 0.88275 0.78320 0.82009 1.90637 1.40621 1.44537 1.70920 1.48246 1.22439 1.56478 1.06838 1.21865 0.89356 0.94792 0.94417 1.22491 0.97969 1.01205 0.97229 1.21204 0.92214 0.85395 0.91430 1.86372 1.42493 1.34808 1.73156 1.21442 0.90363 0.94875 0.93217 1.42421 1.40955 1.20616 1.34066 1.19538 1.12682 1.00697 1.05086 0.91243 1.25457 1.00558 0.97461 1.02514 1.69755 1.33265 1.14341 1.43887 0.85211 0.77364 0.77931 0.79651 1.21505 1.22002 1.19881 1.21818 0.98929 0.97650 0.96569 1.21426 0.88451 0.98491 0.91679 1.88483 1.42491 1.65215 1.35551 0.89536 0.92959 0.91997 0.89604 0.88570 0.88360 0.90498 0.90238 0.92797 0.88231 0.86800 0.89985 0.87581 0.91359 0.90710 0.76882 0.95809 0.96120 0.78764 0.93837 0.90348 0.89422 0.89824 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.62 71.98 0.69 -1.28 16 2 C 0.06 0.97 4.07 31.26 0.13 1.10 16 3 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 4 C -0.15 -1.52 6.57 32.05 0.21 -1.31 16 5 C -0.15 -1.73 6.55 31.86 0.21 -1.52 16 6 C 0.08 1.22 3.51 31.06 0.11 1.33 16 7 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 8 C -0.11 -2.00 4.07 30.59 0.12 -1.87 16 9 C -0.13 -2.59 3.96 29.85 0.12 -2.48 16 10 C 0.51 13.51 7.70 87.66 0.67 14.18 16 11 O -0.59 -19.31 15.40 -3.04 -0.05 -19.36 16 12 N -0.61 -15.48 2.97 -817.99 -2.43 -17.90 16 13 C 0.12 2.75 6.12 86.51 0.53 3.28 16 14 C -0.15 -4.37 4.89 30.82 0.15 -4.22 16 15 C 0.14 4.32 0.71 -10.77 -0.01 4.32 16 16 O -0.56 -17.82 11.70 -148.98 -1.74 -19.56 16 17 C 0.13 5.02 5.43 86.38 0.47 5.49 16 18 N -0.74 -35.22 5.07 -343.45 -1.74 -36.96 16 19 C -0.25 -13.51 9.99 84.04 0.84 -12.67 16 20 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 21 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 22 N -0.96 -56.12 13.06 21.65 0.28 -55.84 16 23 Si 0.97 45.25 29.55 68.60 2.03 47.28 16 24 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 25 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 26 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 27 C -0.11 -3.03 5.11 30.69 0.16 -2.88 16 28 C 0.12 3.22 6.19 86.38 0.53 3.76 16 29 O -0.40 -7.98 10.34 -148.98 -1.54 -9.52 16 30 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.09 0.79 8.06 -2.39 -0.02 0.77 16 34 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.08 0.93 7.85 -2.38 -0.02 0.91 16 37 H 0.08 1.48 8.10 -2.39 -0.02 1.46 16 38 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 39 H 0.10 2.04 7.46 -2.39 -0.02 2.03 16 40 H 0.11 1.74 7.92 -2.39 -0.02 1.72 16 41 H 0.08 1.86 7.81 -2.39 -0.02 1.84 16 42 H 0.11 2.01 5.93 -2.38 -0.01 2.00 16 43 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.07 2.48 6.53 -2.39 -0.02 2.46 16 45 H 0.38 12.21 8.19 -74.06 -0.61 11.61 16 46 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.38 18.42 5.55 -92.71 -0.51 17.90 16 49 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 50 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 51 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 52 H 0.08 2.30 7.01 -2.38 -0.02 2.28 16 53 H 0.07 1.98 7.81 -2.39 -0.02 1.96 16 Total: -1.00 -67.42 409.55 0.00 -67.42 By element: Atomic # 1 Polarization: 42.70 SS G_CDS: -0.22 Total: 42.47 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 5.41 Total: 1.96 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -3.88 Total: -110.70 kcal Atomic # 8 Polarization: -45.11 SS G_CDS: -3.33 Total: -48.44 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -67.42 0.00 -67.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700308517.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.008 kcal (2) G-P(sol) polarization free energy of solvation -67.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds