Wall clock time and date at job start Tue Mar 31 2020 23:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 110.67634 * 2 1 4 4 C 1.54997 * 110.61638 * 237.03848 * 2 1 3 5 5 C 1.54815 * 102.09311 * 204.47396 * 4 2 1 6 6 C 1.54093 * 104.18595 * 20.88073 * 5 4 2 7 7 H 1.08996 * 109.87999 * 242.45739 * 6 5 4 8 8 C 1.53006 * 109.87918 * 121.45377 * 6 5 4 9 9 C 1.52999 * 109.46997 * 175.00095 * 8 6 5 10 10 C 1.50706 * 109.46573 * 180.02562 * 9 8 6 11 11 O 1.21274 * 120.00042 * 359.72068 * 10 9 8 12 12 N 1.34777 * 119.99766 * 179.97438 * 10 9 8 13 13 C 1.46929 * 120.63091 * 359.72591 * 12 10 9 14 14 C 1.52765 * 109.00690 * 233.58011 * 13 12 10 15 15 C 1.53032 * 109.38265 * 305.58660 * 14 13 12 16 16 O 1.42894 * 109.46125 * 301.21882 * 15 14 13 17 17 C 1.53001 * 109.44971 * 181.25365 * 15 14 13 18 18 N 1.46492 * 109.47193 * 59.93832 * 17 15 14 19 19 C 1.36939 * 120.00194 * 180.02562 * 18 17 15 20 20 H 1.07996 * 119.99667 * 359.97438 * 19 18 17 21 21 C 1.38813 * 120.00016 * 180.02562 * 19 18 17 22 22 N 1.31615 * 120.00140 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00057 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46797 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47108 * 119.99582 * 23 21 19 26 26 H 1.48500 * 109.47425 * 240.00133 * 23 21 19 27 27 C 1.53041 * 109.53897 * 61.24115 * 15 14 13 28 28 C 1.46923 * 120.63281 * 179.97438 * 12 10 9 29 29 O 1.43748 * 107.29498 * 2.03042 * 6 5 4 30 30 H 1.09000 * 109.46860 * 182.96193 * 1 2 3 31 31 H 1.09000 * 109.46791 * 302.96060 * 1 2 3 32 32 H 1.08991 * 109.47055 * 62.95995 * 1 2 3 33 33 H 1.09010 * 110.90716 * 86.27556 * 4 2 1 34 34 H 1.09001 * 110.90870 * 322.67791 * 4 2 1 35 35 H 1.08996 * 110.48449 * 262.20354 * 5 4 2 36 36 H 1.08993 * 110.48430 * 139.55788 * 5 4 2 37 37 H 1.09000 * 109.46866 * 54.99883 * 8 6 5 38 38 H 1.09001 * 109.46611 * 295.00000 * 8 6 5 39 39 H 1.09000 * 109.47486 * 60.00167 * 9 8 6 40 40 H 1.09001 * 109.47362 * 299.99445 * 9 8 6 41 41 H 1.09004 * 109.58660 * 353.40881 * 13 12 10 42 42 H 1.09001 * 109.59243 * 113.83779 * 13 12 10 43 43 H 1.09001 * 109.56725 * 185.54838 * 14 13 12 44 44 H 1.09006 * 109.38446 * 65.51568 * 14 13 12 45 45 H 0.96700 * 113.99983 * 300.06726 * 16 15 14 46 46 H 1.09006 * 109.47187 * 179.97438 * 17 15 14 47 47 H 1.09006 * 109.46949 * 299.93298 * 17 15 14 48 48 H 0.97007 * 120.00253 * 359.97438 * 18 17 15 49 49 H 0.97004 * 120.00209 * 180.02562 * 22 21 19 50 50 H 1.09008 * 109.49661 * 178.68278 * 27 15 14 51 51 H 1.09000 * 109.52837 * 58.60129 * 27 15 14 52 52 H 1.08998 * 109.58754 * 246.16009 * 28 12 10 53 53 H 1.08998 * 109.58450 * 6.58545 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 6 2.0758 -0.7893 -1.2172 5 6 3.4795 -1.2167 -0.7236 6 6 3.3840 -1.1255 0.8116 7 1 4.0873 -0.3802 1.1831 8 6 3.6936 -2.4885 1.4341 9 6 3.7188 -2.3591 2.9584 10 6 4.0243 -3.7016 3.5713 11 8 4.1992 -4.6676 2.8594 12 7 4.0982 -3.8295 4.9110 13 6 3.8891 -2.6683 5.7866 14 6 5.0827 -2.5359 6.7308 15 6 5.2896 -3.8563 7.4761 16 8 4.1059 -4.1805 8.2078 17 6 6.4653 -3.7156 8.4451 18 7 6.1795 -2.6492 9.4080 19 6 7.0945 -2.3399 10.3788 20 1 8.0266 -2.8825 10.4347 21 6 6.8234 -1.3298 11.2915 22 7 5.6872 -0.6690 11.2236 23 14 8.0712 -0.9084 12.6162 24 1 9.2579 -1.7905 12.4770 25 1 8.4889 0.5091 12.4699 26 1 7.4593 -1.1086 13.9544 27 6 5.5885 -4.9704 6.4703 28 6 4.3946 -5.1317 5.5234 29 8 2.0385 -0.7354 1.1336 30 1 -0.3633 -1.0263 0.0531 31 1 -0.3633 0.5591 0.8623 32 1 -0.3633 0.4672 -0.9153 33 1 2.1509 -0.1475 -2.0951 34 1 1.4549 -1.6605 -1.4260 35 1 4.2406 -0.5331 -1.0999 36 1 3.6974 -2.2390 -1.0323 37 1 4.6651 -2.8361 1.0828 38 1 2.9246 -3.2039 1.1427 39 1 2.7472 -2.0115 3.3097 40 1 4.4878 -1.6437 3.2497 41 1 3.8016 -1.7657 5.1818 42 1 2.9792 -2.8094 6.3699 43 1 4.8931 -1.7384 7.4492 44 1 5.9766 -2.3001 6.1531 45 1 3.8557 -3.5169 8.8652 46 1 6.6127 -4.6558 8.9765 47 1 7.3686 -3.4688 7.8870 48 1 5.3424 -2.1616 9.3576 49 1 5.4979 0.0371 11.8612 50 1 5.7589 -5.9058 7.0035 51 1 6.4775 -4.7127 5.8946 52 1 3.5267 -5.4775 6.0849 53 1 4.6404 -5.8540 4.7451 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700308518.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:48 Heat of formation + Delta-G solvation = -157.353533 kcal Electronic energy + Delta-G solvation = -30591.531157 eV Core-core repulsion = 26461.745537 eV Total energy + Delta-G solvation = -4129.785620 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.49929 -40.54346 -39.69679 -36.82152 -35.76157 -34.96530 -33.49375 -33.14916 -32.69274 -31.82850 -31.36500 -28.50333 -27.34290 -25.57268 -24.47579 -24.13452 -22.97748 -22.15707 -21.83021 -21.34240 -19.91958 -19.45998 -18.22965 -17.51842 -17.35945 -17.04972 -16.77100 -16.68716 -16.31804 -15.94639 -15.73497 -15.61796 -15.02675 -14.93503 -14.76766 -14.74536 -14.35408 -14.34036 -13.95286 -13.84207 -13.60600 -13.30000 -13.21156 -13.04313 -12.94930 -12.84058 -12.77664 -12.62623 -12.51394 -12.26989 -12.21571 -12.07068 -12.05094 -11.97994 -11.76895 -11.68581 -11.45721 -11.31300 -10.98469 -10.87970 -10.67702 -10.54582 -9.64448 -9.02266 -7.97143 -5.25220 1.47589 1.48648 1.57810 1.61193 2.00234 2.54543 2.88765 3.25072 3.40206 3.44686 3.64529 3.67102 3.74511 3.81960 3.91337 3.97544 4.03597 4.05748 4.15104 4.23221 4.28561 4.33641 4.37543 4.47695 4.52490 4.56829 4.61241 4.69431 4.70069 4.76598 4.78043 4.82425 4.83544 4.90100 4.95830 4.97074 4.99806 5.07677 5.10029 5.16295 5.18088 5.23430 5.29426 5.32129 5.32768 5.49493 5.53989 6.09466 6.24940 6.41560 6.74336 7.14521 7.33161 8.03724 8.29338 9.25642 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015338 B = 0.002136 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.041706 B =13104.859827 C =14146.830873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.062 3.938 3 H 0.077 0.923 4 C -0.148 4.148 5 C -0.153 4.153 6 C 0.075 3.925 7 H 0.078 0.922 8 C -0.094 4.094 9 C -0.132 4.132 10 C 0.511 3.489 11 O -0.585 6.585 12 N -0.607 5.607 13 C 0.117 3.883 14 C -0.150 4.150 15 C 0.137 3.863 16 O -0.563 6.563 17 C 0.129 3.871 18 N -0.735 5.735 19 C -0.246 4.246 20 H 0.070 0.930 21 C -0.068 4.068 22 N -0.962 5.962 23 Si 0.969 3.031 24 H -0.271 1.271 25 H -0.292 1.292 26 H -0.294 1.294 27 C -0.110 4.110 28 C 0.122 3.878 29 O -0.393 6.393 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.058 0.942 39 H 0.104 0.896 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.381 0.619 46 H 0.019 0.981 47 H 0.027 0.973 48 H 0.377 0.623 49 H 0.252 0.748 50 H 0.086 0.914 51 H 0.082 0.918 52 H 0.071 0.929 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.803 0.667 -25.437 26.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.005 3.995 3 H 0.095 0.905 4 C -0.185 4.185 5 C -0.190 4.190 6 C 0.018 3.982 7 H 0.096 0.904 8 C -0.132 4.132 9 C -0.171 4.171 10 C 0.302 3.698 11 O -0.466 6.466 12 N -0.340 5.340 13 C -0.005 4.005 14 C -0.189 4.189 15 C 0.096 3.904 16 O -0.370 6.370 17 C 0.002 3.998 18 N -0.380 5.380 19 C -0.378 4.378 20 H 0.088 0.912 21 C -0.261 4.261 22 N -0.613 5.613 23 Si 0.798 3.202 24 H -0.195 1.195 25 H -0.219 1.219 26 H -0.221 1.221 27 C -0.149 4.149 28 C -0.001 4.001 29 O -0.313 6.313 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.122 0.878 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.230 0.770 46 H 0.037 0.963 47 H 0.045 0.955 48 H 0.211 0.789 49 H 0.061 0.939 50 H 0.104 0.896 51 H 0.101 0.899 52 H 0.089 0.911 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.644 -0.448 -25.899 27.008 hybrid contribution 0.564 0.899 1.525 1.858 sum -7.080 0.451 -24.374 25.385 Atomic orbital electron populations 1.21785 0.92735 1.02580 1.03162 1.23318 0.95706 0.95569 0.84891 0.90549 1.23181 0.95818 1.00835 0.98688 1.23011 0.98480 1.03437 0.94107 1.22822 0.84636 0.95624 0.95142 0.90379 1.21472 1.02515 0.96104 0.93095 1.21690 1.05033 0.93582 0.96800 1.21256 0.75351 0.91734 0.81486 1.90638 1.52518 1.42215 1.61277 1.48236 1.69527 1.10533 1.05658 1.21679 0.97959 0.88366 0.92474 1.22356 0.99581 0.97843 0.99086 1.21245 0.84426 0.94497 0.90280 1.86379 1.43909 1.51455 1.55254 1.21433 0.96507 0.90993 0.90894 1.42379 1.20945 1.40569 1.34081 1.19573 0.98489 1.13520 1.06220 0.91153 1.25456 0.99300 0.99389 1.01918 1.69762 1.25079 1.26628 1.39795 0.85145 0.78658 0.77403 0.78947 1.19519 1.21922 1.22101 1.21817 0.98554 0.98715 0.95792 1.21419 0.97730 0.85202 0.95748 1.88884 1.28378 1.73846 1.40238 0.92657 0.92304 0.89306 0.88503 0.90930 0.89109 0.90355 0.90213 0.92347 0.87772 0.87133 0.87432 0.90579 0.90658 0.90742 0.76955 0.96299 0.95518 0.78899 0.93868 0.89594 0.89902 0.91100 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.66 71.98 0.70 -1.03 16 2 C 0.06 0.84 3.98 31.28 0.12 0.97 16 3 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 4 C -0.15 -1.62 6.59 31.90 0.21 -1.41 16 5 C -0.15 -1.84 6.64 31.58 0.21 -1.63 16 6 C 0.08 1.18 3.41 30.97 0.11 1.29 16 7 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 8 C -0.09 -1.78 3.99 30.60 0.12 -1.66 16 9 C -0.13 -2.56 3.96 29.85 0.12 -2.45 16 10 C 0.51 13.39 7.70 87.66 0.67 14.07 16 11 O -0.59 -19.18 15.39 -3.01 -0.05 -19.22 16 12 N -0.61 -15.35 2.98 -819.65 -2.44 -17.80 16 13 C 0.12 2.70 6.08 86.22 0.52 3.23 16 14 C -0.15 -4.18 4.91 30.53 0.15 -4.03 16 15 C 0.14 4.20 0.71 -10.77 -0.01 4.19 16 16 O -0.56 -18.21 11.71 -148.98 -1.74 -19.96 16 17 C 0.13 4.96 5.40 86.38 0.47 5.43 16 18 N -0.73 -34.79 5.07 -343.45 -1.74 -36.53 16 19 C -0.25 -13.28 9.99 84.03 0.84 -12.44 16 20 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 21 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 22 N -0.96 -55.86 13.06 21.65 0.28 -55.57 16 23 Si 0.97 44.99 29.55 68.60 2.03 47.02 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 26 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 27 C -0.11 -2.95 5.11 30.69 0.16 -2.79 16 28 C 0.12 3.22 6.20 86.38 0.54 3.75 16 29 O -0.39 -7.49 10.54 -148.98 -1.57 -9.06 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.07 0.86 8.06 -2.39 -0.02 0.85 16 35 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.08 0.98 7.70 -2.39 -0.02 0.96 16 37 H 0.08 1.52 8.10 -2.39 -0.02 1.50 16 38 H 0.06 1.32 8.10 -2.39 -0.02 1.30 16 39 H 0.10 1.97 7.72 -2.39 -0.02 1.96 16 40 H 0.11 1.76 7.68 -2.39 -0.02 1.74 16 41 H 0.11 1.96 5.93 -2.38 -0.01 1.95 16 42 H 0.08 1.79 7.81 -2.39 -0.02 1.77 16 43 H 0.07 2.39 6.82 -2.39 -0.02 2.38 16 44 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 45 H 0.38 12.55 7.85 -74.06 -0.58 11.97 16 46 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 47 H 0.03 1.03 8.14 -2.38 -0.02 1.02 16 48 H 0.38 18.21 5.58 -92.70 -0.52 17.70 16 49 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 50 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 51 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 52 H 0.07 1.93 7.81 -2.39 -0.02 1.92 16 53 H 0.08 2.31 7.01 -2.39 -0.02 2.29 16 Total: -1.00 -66.83 409.44 -0.04 -66.87 By element: Atomic # 1 Polarization: 42.23 SS G_CDS: -0.20 Total: 42.03 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 5.39 Total: 2.22 kcal Atomic # 7 Polarization: -106.00 SS G_CDS: -3.90 Total: -109.90 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: -3.36 Total: -48.24 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -66.83 -0.04 -66.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700308518.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.482 kcal (2) G-P(sol) polarization free energy of solvation -66.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds