Wall clock time and date at job start Tue Mar 31 2020 23:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99461 * 2 1 4 4 C 1.53008 * 109.46843 * 179.97438 * 3 2 1 5 5 H 1.09010 * 109.46725 * 54.99913 * 4 3 2 6 6 O 1.42898 * 109.47494 * 295.00170 * 4 3 2 7 7 C 1.42895 * 114.00254 * 149.99840 * 6 4 3 8 8 C 1.50701 * 109.47031 * 174.99526 * 4 3 2 9 9 O 1.21282 * 119.99427 * 115.00224 * 8 4 3 10 10 N 1.34769 * 119.99988 * 295.00263 * 8 4 3 11 11 C 1.47567 * 125.63358 * 359.97438 * 10 8 4 12 12 C 1.54141 * 104.78418 * 203.34597 * 11 10 8 13 13 C 1.54377 * 102.47439 * 323.91289 * 12 11 10 14 14 C 1.47088 * 125.62719 * 179.97438 * 10 8 4 15 15 H 1.09002 * 109.87736 * 59.40744 * 14 10 8 16 16 C 1.53001 * 109.87893 * 298.40813 * 14 10 8 17 17 C 1.52105 * 110.65896 * 206.02620 * 12 11 10 18 18 C 1.53347 * 109.44377 * 295.59668 * 17 12 11 19 19 N 1.46929 * 108.69140 * 306.70387 * 18 17 12 20 20 C 1.36929 * 120.55786 * 234.37730 * 19 18 17 21 21 H 1.07999 * 120.00073 * 27.94765 * 20 19 18 22 22 C 1.38812 * 120.00510 * 207.95238 * 20 19 18 23 23 N 1.31623 * 119.99446 * 17.47336 * 22 20 19 24 24 Si 1.86794 * 120.00475 * 197.47653 * 22 20 19 25 25 H 1.48507 * 109.47156 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47380 * 119.99745 * 24 22 20 27 27 H 1.48501 * 109.47023 * 239.99957 * 24 22 20 28 28 C 1.46940 * 118.88968 * 54.35469 * 19 18 17 29 29 C 1.52102 * 110.65374 * 81.78607 * 12 11 10 30 30 H 1.08997 * 109.46572 * 60.00989 * 1 2 3 31 31 H 1.09003 * 109.46477 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47428 * 300.00446 * 1 2 3 33 33 H 1.09001 * 109.47592 * 59.99589 * 3 2 1 34 34 H 1.08997 * 109.47044 * 299.99053 * 3 2 1 35 35 H 1.09000 * 109.47279 * 180.02562 * 7 6 4 36 36 H 1.08998 * 109.47222 * 299.99838 * 7 6 4 37 37 H 1.09002 * 109.47167 * 59.99796 * 7 6 4 38 38 H 1.08997 * 110.37592 * 322.17410 * 11 10 8 39 39 H 1.09001 * 110.37462 * 84.52168 * 11 10 8 40 40 H 1.08998 * 110.73210 * 276.29884 * 13 12 11 41 41 H 1.08996 * 110.73161 * 152.98470 * 13 12 11 42 42 H 1.09005 * 109.47090 * 61.45092 * 16 14 10 43 43 H 1.09004 * 109.47127 * 301.45522 * 16 14 10 44 44 H 1.08997 * 109.47451 * 181.45399 * 16 14 10 45 45 H 1.08993 * 109.47363 * 55.58903 * 17 12 11 46 46 H 1.08994 * 109.47270 * 175.60919 * 17 12 11 47 47 H 1.08994 * 109.59729 * 186.94173 * 18 17 12 48 48 H 1.09005 * 109.72932 * 66.54681 * 18 17 12 49 49 H 0.97003 * 119.99657 * 180.02562 * 23 22 20 50 50 H 1.09000 * 109.59935 * 185.88546 * 28 19 18 51 51 H 1.09000 * 109.73624 * 65.48059 * 28 19 18 52 52 H 1.08996 * 109.48120 * 184.39212 * 29 12 11 53 53 H 1.09002 * 109.48065 * 304.40430 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 1 3.8514 0.5683 -0.8410 6 8 3.9650 0.5798 1.2219 7 6 5.1683 -0.1814 1.1018 8 6 4.1480 2.5561 -0.1233 9 8 4.8062 3.0108 0.7883 10 7 3.9643 3.2771 -1.2470 11 6 3.1903 2.8470 -2.4275 12 6 3.7565 3.6804 -3.5940 13 6 4.0582 5.0360 -2.9198 14 6 4.5022 4.6227 -1.4992 15 1 5.5904 4.6039 -1.4395 16 6 3.9419 5.6080 -0.4715 17 6 2.7141 3.8487 -4.6889 18 6 2.3832 2.4790 -5.2936 19 7 3.6353 1.8344 -5.7128 20 6 3.7912 1.3857 -6.9971 21 1 3.2525 1.8600 -7.8040 22 6 4.6417 0.3210 -7.2619 23 7 5.0268 -0.4723 -6.2848 24 14 5.2394 0.0142 -9.0048 25 1 4.6656 1.0398 -9.9127 26 1 6.7218 0.0942 -9.0410 27 1 4.8056 -1.3356 -9.4465 28 6 4.7175 1.6799 -4.7310 29 6 5.0351 3.0543 -4.1296 30 1 -0.3632 0.5137 -0.8901 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6885 1.8465 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 5.4268 -0.6079 2.0710 36 1 5.0196 -0.9845 0.3799 37 1 5.9761 0.4670 0.7626 38 1 3.3404 1.7835 -2.6129 39 1 2.1312 3.0627 -2.2861 40 1 3.1617 5.6546 -2.8789 41 1 4.8632 5.5550 -3.4401 42 1 4.2486 5.3031 0.5290 43 1 2.8535 5.6157 -0.5314 44 1 4.3243 6.6072 -0.6801 45 1 1.8104 4.2871 -4.2658 46 1 3.1065 4.5040 -5.4665 47 1 1.7315 2.6086 -6.1576 48 1 1.8841 1.8588 -4.5489 49 1 5.6214 -1.2161 -6.4698 50 1 5.6047 1.2827 -5.2242 51 1 4.4028 0.9987 -3.9404 52 1 5.4604 3.6982 -4.8993 53 1 5.7514 2.9383 -3.3162 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707125632.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:28 Heat of formation + Delta-G solvation = -117.598121 kcal Electronic energy + Delta-G solvation = -32956.296816 eV Core-core repulsion = 28828.235121 eV Total energy + Delta-G solvation = -4128.061696 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.00227 -40.32324 -38.95221 -38.15121 -37.38345 -34.81935 -33.63716 -32.49667 -31.61948 -31.28708 -28.75102 -27.77356 -27.20481 -26.95563 -26.00365 -24.82700 -23.92620 -23.04345 -22.09260 -20.36206 -19.71594 -18.76532 -18.50436 -17.76424 -17.54557 -17.17935 -16.83218 -16.76580 -16.25996 -16.03824 -15.73150 -15.37187 -15.29589 -15.26356 -14.89404 -14.81337 -14.63872 -14.34949 -14.06606 -13.83252 -13.50637 -13.35442 -13.20529 -13.05210 -12.99325 -12.88322 -12.77878 -12.59332 -12.39156 -12.32793 -12.26071 -12.13128 -11.98156 -11.84124 -11.79890 -11.68491 -11.40187 -11.08041 -10.92005 -10.71145 -10.49295 -10.43122 -9.73544 -8.61608 -7.84380 -5.28021 1.32160 1.45930 1.49258 1.58200 1.71117 2.53253 2.61151 2.70252 3.29277 3.37262 3.49136 3.72308 3.74662 3.77648 3.82348 3.89710 4.09298 4.21979 4.24724 4.29351 4.32589 4.42265 4.44454 4.48027 4.52392 4.56977 4.58123 4.58405 4.68655 4.71384 4.73120 4.76275 4.84723 4.86840 4.94357 4.97538 5.07213 5.13302 5.24135 5.30313 5.33104 5.39277 5.41433 5.45408 5.58188 5.69247 5.80872 5.85819 6.09806 6.36665 6.42885 6.97960 7.19092 7.92362 8.41931 9.21231 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010636 B = 0.003974 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.040265 B = 7044.032505 C = 7956.181738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.075 3.925 4 C 0.077 3.923 5 H 0.089 0.911 6 O -0.370 6.370 7 C 0.028 3.972 8 C 0.512 3.488 9 O -0.559 6.559 10 N -0.603 5.603 11 C 0.105 3.895 12 C -0.053 4.053 13 C -0.106 4.106 14 C 0.130 3.870 15 H 0.059 0.941 16 C -0.151 4.151 17 C -0.104 4.104 18 C 0.137 3.863 19 N -0.607 5.607 20 C -0.254 4.254 21 H 0.068 0.932 22 C -0.050 4.050 23 N -0.935 5.935 24 Si 0.958 3.042 25 H -0.265 1.265 26 H -0.295 1.295 27 H -0.295 1.295 28 C 0.181 3.819 29 C -0.112 4.112 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.051 0.949 37 H 0.033 0.967 38 H 0.064 0.936 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.041 0.959 43 H 0.067 0.933 44 H 0.085 0.915 45 H 0.094 0.906 46 H 0.064 0.936 47 H 0.054 0.946 48 H 0.020 0.980 49 H 0.247 0.753 50 H 0.045 0.955 51 H -0.003 1.003 52 H 0.056 0.944 53 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.666 9.842 11.310 16.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C -0.002 4.002 4 C 0.015 3.985 5 H 0.107 0.893 6 O -0.288 6.288 7 C -0.068 4.068 8 C 0.300 3.700 9 O -0.438 6.438 10 N -0.337 5.337 11 C -0.017 4.017 12 C -0.054 4.054 13 C -0.143 4.143 14 C 0.027 3.973 15 H 0.077 0.923 16 C -0.209 4.209 17 C -0.143 4.143 18 C 0.012 3.988 19 N -0.330 5.330 20 C -0.385 4.385 21 H 0.085 0.915 22 C -0.245 4.245 23 N -0.581 5.581 24 Si 0.787 3.213 25 H -0.189 1.189 26 H -0.222 1.222 27 H -0.223 1.223 28 C 0.055 3.945 29 C -0.151 4.151 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.129 0.871 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.082 0.918 39 H 0.113 0.887 40 H 0.123 0.877 41 H 0.108 0.892 42 H 0.061 0.939 43 H 0.086 0.914 44 H 0.104 0.896 45 H 0.112 0.888 46 H 0.083 0.917 47 H 0.072 0.928 48 H 0.038 0.962 49 H 0.056 0.944 50 H 0.064 0.936 51 H 0.015 0.985 52 H 0.075 0.925 53 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.221 9.751 12.029 17.086 hybrid contribution 0.922 -0.862 -1.129 1.694 sum -6.299 8.889 10.900 15.411 Atomic orbital electron populations 1.22992 0.78746 1.04176 1.01215 1.87889 1.22060 1.26974 1.95623 1.22484 0.89055 0.86123 1.02499 1.22007 0.95457 0.91271 0.89739 0.89327 1.87927 1.43072 1.67383 1.30373 1.22987 0.85448 0.94223 1.04181 1.20832 0.80938 0.87016 0.81230 1.90658 1.41721 1.71701 1.39704 1.48758 1.51786 1.17815 1.15349 1.22630 0.95977 0.99548 0.83572 1.20903 0.95711 0.94915 0.93880 1.22769 1.03587 0.96169 0.91792 1.21750 0.97754 0.81335 0.96423 0.92290 1.22051 1.01632 0.99086 0.98167 1.21737 0.98115 0.97627 0.96847 1.21156 0.87727 0.92588 0.97318 1.44266 1.11774 1.68647 1.08319 1.19536 1.24427 1.09237 0.85292 0.91476 1.25693 1.02911 0.95677 1.00261 1.70185 1.38249 1.17077 1.32611 0.85341 0.77491 0.77337 0.81109 1.18929 1.22161 1.22260 1.20541 0.91780 0.92200 0.89961 1.21789 0.96366 0.98191 0.98759 0.92686 0.88377 0.92700 0.91590 0.89605 0.87138 0.93023 0.94823 0.91800 0.88731 0.87728 0.89160 0.93941 0.91427 0.89585 0.88791 0.91703 0.92778 0.96249 0.94409 0.93644 0.98521 0.92525 0.93416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 11.01 113.37 1.25 1.69 16 2 O -0.41 -10.91 10.67 -144.35 -1.54 -12.45 16 3 C 0.08 1.89 5.50 71.98 0.40 2.29 16 4 C 0.08 2.30 2.16 29.85 0.06 2.36 16 5 H 0.09 2.78 7.27 -2.38 -0.02 2.76 16 6 O -0.37 -11.80 9.85 -125.59 -1.24 -13.04 16 7 C 0.03 0.74 10.81 113.37 1.23 1.96 16 8 C 0.51 16.07 6.99 87.66 0.61 16.68 16 9 O -0.56 -20.86 15.54 15.95 0.25 -20.62 16 10 N -0.60 -16.24 3.06 -788.78 -2.41 -18.65 16 11 C 0.10 2.70 3.36 86.56 0.29 2.99 16 12 C -0.05 -1.39 0.54 -51.92 -0.03 -1.42 16 13 C -0.11 -2.08 5.42 31.56 0.17 -1.91 16 14 C 0.13 3.05 3.10 45.38 0.14 3.19 16 15 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 16 C -0.15 -3.08 9.10 71.98 0.66 -2.42 16 17 C -0.10 -2.69 4.83 30.42 0.15 -2.54 16 18 C 0.14 4.87 6.24 86.41 0.54 5.41 16 19 N -0.61 -28.03 2.98 -698.46 -2.08 -30.11 16 20 C -0.25 -13.32 9.57 84.03 0.80 -12.52 16 21 H 0.07 3.42 7.89 -2.91 -0.02 3.40 16 22 C -0.05 -2.73 4.90 84.86 0.42 -2.31 16 23 N -0.93 -54.33 11.20 21.65 0.24 -54.08 16 24 Si 0.96 44.03 29.59 68.60 2.03 46.06 16 25 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 26 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 27 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 28 C 0.18 8.20 5.01 86.41 0.43 8.64 16 29 C -0.11 -3.85 4.83 30.41 0.15 -3.71 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.09 1.86 5.44 -2.39 -0.01 1.84 16 35 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.05 1.31 8.08 -2.39 -0.02 1.29 16 37 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.06 2.01 5.41 -2.39 -0.01 2.00 16 39 H 0.09 1.95 6.88 -2.39 -0.02 1.94 16 40 H 0.10 1.55 7.70 -2.39 -0.02 1.53 16 41 H 0.09 1.69 8.01 -2.39 -0.02 1.67 16 42 H 0.04 1.09 6.88 -2.38 -0.02 1.08 16 43 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.09 1.75 8.09 -2.39 -0.02 1.74 16 46 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.05 1.91 7.93 -2.39 -0.02 1.89 16 48 H 0.02 0.69 7.65 -2.38 -0.02 0.67 16 49 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 50 H 0.05 2.44 6.01 -2.39 -0.01 2.42 16 51 H 0.00 -0.15 6.58 -2.39 -0.02 -0.17 16 52 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 53 H 0.05 1.63 7.84 -2.39 -0.02 1.61 16 Total: -1.00 -69.82 403.13 3.39 -66.43 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.88 Total: 18.07 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 7.26 Total: 18.38 kcal Atomic # 7 Polarization: -98.60 SS G_CDS: -4.25 Total: -102.85 kcal Atomic # 8 Polarization: -43.57 SS G_CDS: -2.53 Total: -46.10 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -69.82 3.39 -66.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707125632.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.167 kcal (2) G-P(sol) polarization free energy of solvation -69.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds