Wall clock time and date at job start Tue Mar 31 2020 23:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00220 * 2 1 4 4 C 1.53002 * 109.46744 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47454 * 304.72602 * 4 3 2 6 6 O 1.42902 * 109.47190 * 64.73103 * 4 3 2 7 7 C 1.42890 * 113.99747 * 269.99701 * 6 4 3 8 8 C 1.50705 * 109.46672 * 184.72815 * 4 3 2 9 9 O 1.21282 * 120.00026 * 252.25457 * 8 4 3 10 10 N 1.34772 * 119.99917 * 72.25767 * 8 4 3 11 11 C 1.47180 * 125.66378 * 354.90773 * 10 8 4 12 12 C 1.53681 * 107.11517 * 178.52522 * 11 10 8 13 13 C 1.54536 * 103.64378 * 338.44654 * 12 11 10 14 14 C 1.47487 * 125.66360 * 174.93755 * 10 8 4 15 15 H 1.09004 * 110.44519 * 85.09862 * 14 10 8 16 16 C 1.52993 * 110.35539 * 322.85469 * 14 10 8 17 17 C 1.52278 * 110.67050 * 96.52333 * 12 11 10 18 18 C 1.53303 * 109.41562 * 183.14655 * 17 12 11 19 19 N 1.46927 * 108.71064 * 306.48883 * 18 17 12 20 20 C 1.36939 * 120.56640 * 234.25748 * 19 18 17 21 21 H 1.08005 * 119.99921 * 31.86170 * 20 19 18 22 22 C 1.38813 * 120.00221 * 211.86272 * 20 19 18 23 23 N 1.31619 * 119.99936 * 10.87515 * 22 20 19 24 24 Si 1.86800 * 119.99966 * 190.88278 * 22 20 19 25 25 H 1.48497 * 109.47193 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47142 * 119.99814 * 24 22 20 27 27 H 1.48504 * 109.46512 * 239.99741 * 24 22 20 28 28 C 1.46934 * 118.87289 * 54.23316 * 19 18 17 29 29 C 1.52271 * 110.68503 * 220.36872 * 12 11 10 30 30 H 1.09004 * 109.47255 * 59.99617 * 1 2 3 31 31 H 1.09000 * 109.47413 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47185 * 300.00278 * 1 2 3 33 33 H 1.09003 * 109.46986 * 60.00091 * 3 2 1 34 34 H 1.08997 * 109.47117 * 300.00184 * 3 2 1 35 35 H 1.09003 * 109.46875 * 180.02562 * 7 6 4 36 36 H 1.09004 * 109.47369 * 299.99748 * 7 6 4 37 37 H 1.08996 * 109.47298 * 60.00399 * 7 6 4 38 38 H 1.09005 * 109.90650 * 59.16039 * 11 10 8 39 39 H 1.08993 * 110.06836 * 297.98505 * 11 10 8 40 40 H 1.09004 * 111.01447 * 276.77609 * 13 12 11 41 41 H 1.08993 * 111.01487 * 152.89635 * 13 12 11 42 42 H 1.09003 * 109.47116 * 304.52581 * 16 14 10 43 43 H 1.09002 * 109.47392 * 184.52156 * 16 14 10 44 44 H 1.09002 * 109.47011 * 64.51990 * 16 14 10 45 45 H 1.09001 * 109.47620 * 303.12764 * 17 12 11 46 46 H 1.09003 * 109.47553 * 63.15950 * 17 12 11 47 47 H 1.09001 * 109.60055 * 186.72392 * 18 17 12 48 48 H 1.09000 * 109.73102 * 66.33763 * 18 17 12 49 49 H 0.97000 * 120.00297 * 179.97438 * 23 22 20 50 50 H 1.09004 * 109.59768 * 185.99634 * 28 19 18 51 51 H 1.08994 * 109.72830 * 65.60534 * 28 19 18 52 52 H 1.09005 * 109.48072 * 296.83323 * 29 12 11 53 53 H 1.09000 * 109.48391 * 56.85963 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1844 -0.0006 5 1 3.8518 0.5720 0.8437 6 8 3.9644 0.5737 -1.2193 7 6 4.0457 -0.8516 -1.1578 8 6 4.1481 2.5563 0.1165 9 8 4.6933 3.0609 -0.8423 10 7 4.0903 3.2225 1.2866 11 6 3.3728 2.7782 2.4924 12 6 3.6195 3.8349 3.5806 13 6 4.9082 4.5472 3.1116 14 6 4.7351 4.5180 1.5713 15 1 4.0978 5.3402 1.2458 16 6 6.0982 4.5971 0.8811 17 6 2.4643 4.8253 3.6400 18 6 2.7754 5.9095 4.6781 19 7 3.1061 5.2597 5.9537 20 6 2.4349 5.5932 7.0998 21 1 1.3990 5.8950 7.0505 22 6 3.0858 5.5435 8.3248 23 7 4.3918 5.3868 8.3702 24 14 2.1080 5.6986 9.9089 25 1 0.6679 5.8655 9.5874 26 1 2.2942 4.4738 10.7276 27 1 2.5849 6.8807 10.6710 28 6 4.1690 4.2455 5.9787 29 6 3.8487 3.1718 4.9321 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8463 -0.8899 35 1 4.3784 -1.2384 -2.1211 36 1 4.7573 -1.1419 -0.3848 37 1 3.0641 -1.2617 -0.9207 38 1 3.7582 1.8122 2.8189 39 1 2.3055 2.7009 2.2853 40 1 5.7950 3.9913 3.4158 41 1 4.9451 5.5718 3.4814 42 1 6.7098 3.7479 1.1861 43 1 6.5962 5.5242 1.1652 44 1 5.9599 4.5755 -0.1999 45 1 2.3304 5.2865 2.6615 46 1 1.5511 4.3019 3.9234 47 1 1.9037 6.5506 4.8097 48 1 3.6221 6.5083 4.3425 49 1 4.8467 5.3524 9.2263 50 1 4.2161 3.7896 6.9677 51 1 5.1266 4.7103 5.7444 52 1 2.9498 2.6315 5.2291 53 1 4.6839 2.4753 4.8583 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707125636.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:37 Heat of formation + Delta-G solvation = -114.604569 kcal Electronic energy + Delta-G solvation = -32271.852476 eV Core-core repulsion = 28143.920590 eV Total energy + Delta-G solvation = -4127.931886 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.95056 -40.32457 -39.08355 -37.99892 -37.35533 -34.78978 -33.54687 -32.65861 -31.52322 -31.16752 -28.69908 -27.98223 -27.19119 -26.88027 -25.84902 -24.82303 -23.88870 -22.68633 -22.55004 -20.29023 -19.67042 -18.57721 -18.21107 -17.90348 -17.68180 -17.00513 -16.84923 -16.77320 -16.45445 -16.00508 -15.68421 -15.46824 -15.15178 -15.07958 -14.94327 -14.78957 -14.58567 -14.36323 -14.01320 -13.87508 -13.71170 -13.26319 -13.13319 -13.09163 -12.99095 -12.87789 -12.80433 -12.60104 -12.45001 -12.27524 -12.18230 -12.17495 -12.07147 -11.83872 -11.72208 -11.43242 -11.07489 -10.98956 -10.92115 -10.69901 -10.50233 -10.46290 -9.71657 -8.54135 -7.82437 -5.32564 1.35873 1.47415 1.50062 1.58053 1.59253 2.53461 2.66526 2.83805 3.31136 3.45762 3.50546 3.70679 3.74634 3.76109 3.82985 3.91130 4.09131 4.17717 4.24064 4.30589 4.37555 4.48522 4.50811 4.52639 4.56642 4.59339 4.65468 4.68226 4.70342 4.72972 4.73592 4.84448 4.86070 4.92740 4.93999 4.97787 5.09491 5.14077 5.22882 5.26926 5.31737 5.35729 5.47219 5.47578 5.60707 5.70916 5.88232 5.99556 6.04813 6.41693 6.47113 7.02498 7.22291 7.93110 8.44385 9.22534 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015714 B = 0.002969 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.393793 B = 9429.886358 C =10426.801457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.398 6.398 3 C 0.048 3.952 4 C 0.082 3.918 5 H 0.107 0.893 6 O -0.385 6.385 7 C 0.026 3.974 8 C 0.533 3.467 9 O -0.553 6.553 10 N -0.605 5.605 11 C 0.107 3.893 12 C -0.051 4.051 13 C -0.112 4.112 14 C 0.139 3.861 15 H 0.080 0.920 16 C -0.155 4.155 17 C -0.107 4.107 18 C 0.142 3.858 19 N -0.608 5.608 20 C -0.258 4.258 21 H 0.063 0.937 22 C -0.047 4.047 23 N -0.934 5.934 24 Si 0.963 3.037 25 H -0.267 1.267 26 H -0.291 1.291 27 H -0.295 1.295 28 C 0.182 3.818 29 C -0.113 4.113 30 H 0.046 0.954 31 H 0.103 0.897 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.098 0.902 36 H 0.049 0.951 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.049 0.951 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.063 0.937 47 H 0.048 0.952 48 H 0.018 0.982 49 H 0.248 0.752 50 H 0.049 0.951 51 H 0.000 1.000 52 H 0.058 0.942 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.600 -11.227 -16.386 20.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C -0.029 4.029 4 C 0.021 3.979 5 H 0.124 0.876 6 O -0.303 6.303 7 C -0.070 4.070 8 C 0.321 3.679 9 O -0.431 6.431 10 N -0.340 5.340 11 C -0.015 4.015 12 C -0.052 4.052 13 C -0.150 4.150 14 C 0.037 3.963 15 H 0.098 0.902 16 C -0.213 4.213 17 C -0.146 4.146 18 C 0.017 3.983 19 N -0.332 5.332 20 C -0.389 4.389 21 H 0.080 0.920 22 C -0.243 4.243 23 N -0.580 5.580 24 Si 0.791 3.209 25 H -0.191 1.191 26 H -0.218 1.218 27 H -0.222 1.222 28 C 0.056 3.944 29 C -0.152 4.152 30 H 0.065 0.935 31 H 0.121 0.879 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.068 0.932 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.082 0.918 47 H 0.067 0.933 48 H 0.036 0.964 49 H 0.057 0.943 50 H 0.067 0.933 51 H 0.018 0.982 52 H 0.076 0.924 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.078 -11.071 -17.017 20.707 hybrid contribution -0.340 0.398 1.454 1.546 sum -4.418 -10.672 -15.563 19.381 Atomic orbital electron populations 1.22974 0.79048 1.04194 1.00914 1.87805 1.21736 1.26607 1.95599 1.22955 0.91467 0.86262 1.02197 1.21882 0.93476 0.92252 0.90303 0.87562 1.87956 1.88113 1.21946 1.32307 1.23093 1.01781 0.78659 1.03418 1.20018 0.80004 0.86481 0.81403 1.90661 1.45651 1.68904 1.37856 1.48639 1.51538 1.22226 1.11611 1.22382 0.97352 0.98385 0.83392 1.20838 0.95643 0.94873 0.93818 1.22849 0.97645 1.01968 0.92491 1.21980 0.94350 0.84972 0.95048 0.90239 1.22033 0.95438 1.02254 1.01576 1.21778 0.97064 0.96919 0.98801 1.21082 0.97494 0.93679 0.86087 1.44248 1.41799 1.43046 1.04116 1.19499 0.93227 1.40314 0.85818 0.91964 1.25841 0.95974 1.01280 1.01204 1.70131 1.07944 1.55547 1.24380 0.85274 0.78721 0.76690 0.80166 1.19145 1.21773 1.22241 1.20548 0.88762 0.88289 0.96780 1.21912 1.01140 0.97991 0.94196 0.93531 0.87883 0.92914 0.90163 0.92625 0.88376 0.93225 0.91853 0.89705 0.89438 0.90848 0.90253 0.93210 0.90564 0.91790 0.90789 0.91834 0.93314 0.96392 0.94260 0.93260 0.98209 0.92360 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 11.01 113.37 1.25 1.55 16 2 O -0.40 -7.16 8.82 -144.07 -1.27 -8.43 16 3 C 0.05 0.92 5.51 71.98 0.40 1.32 16 4 C 0.08 1.84 2.31 29.85 0.07 1.91 16 5 H 0.11 2.01 7.49 -2.39 -0.02 1.99 16 6 O -0.38 -9.82 9.91 -125.65 -1.24 -11.07 16 7 C 0.03 0.46 10.70 113.37 1.21 1.68 16 8 C 0.53 14.36 6.90 87.66 0.60 14.96 16 9 O -0.55 -19.00 14.43 15.71 0.23 -18.77 16 10 N -0.61 -14.49 3.25 -788.66 -2.56 -17.06 16 11 C 0.11 2.25 5.22 86.48 0.45 2.70 16 12 C -0.05 -1.36 0.55 -51.91 -0.03 -1.39 16 13 C -0.11 -2.99 4.34 31.81 0.14 -2.86 16 14 C 0.14 3.46 3.42 45.49 0.16 3.62 16 15 H 0.08 1.96 7.75 -2.38 -0.02 1.95 16 16 C -0.16 -3.94 8.66 71.98 0.62 -3.32 16 17 C -0.11 -3.02 4.74 30.46 0.14 -2.88 16 18 C 0.14 5.33 6.18 86.40 0.53 5.86 16 19 N -0.61 -28.38 2.97 -698.61 -2.08 -30.46 16 20 C -0.26 -13.55 9.57 84.03 0.80 -12.75 16 21 H 0.06 3.21 7.85 -2.91 -0.02 3.19 16 22 C -0.05 -2.56 5.04 84.86 0.43 -2.14 16 23 N -0.93 -53.44 11.08 21.65 0.24 -53.20 16 24 Si 0.96 43.60 29.57 68.60 2.03 45.63 16 25 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 26 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 27 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 28 C 0.18 8.03 4.98 86.40 0.43 8.46 16 29 C -0.11 -3.62 4.72 30.46 0.14 -3.48 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.10 0.94 8.14 -2.39 -0.02 0.93 16 32 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.08 1.30 5.50 -2.39 -0.01 1.29 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.05 0.77 8.09 -2.39 -0.02 0.75 16 37 H 0.06 1.07 6.39 -2.39 -0.02 1.05 16 38 H 0.08 1.59 7.57 -2.38 -0.02 1.57 16 39 H 0.09 1.58 5.74 -2.39 -0.01 1.56 16 40 H 0.07 2.01 7.92 -2.38 -0.02 1.99 16 41 H 0.08 2.38 6.08 -2.39 -0.01 2.37 16 42 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.06 1.86 6.13 -2.39 -0.01 1.85 16 45 H 0.07 1.80 7.47 -2.39 -0.02 1.78 16 46 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.05 1.84 7.93 -2.39 -0.02 1.82 16 48 H 0.02 0.69 6.48 -2.39 -0.02 0.68 16 49 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 50 H 0.05 2.55 6.11 -2.39 -0.01 2.54 16 51 H 0.00 -0.01 7.56 -2.39 -0.02 -0.03 16 52 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 53 H 0.07 1.96 8.11 -2.39 -0.02 1.94 16 Total: -1.00 -67.24 396.96 3.58 -63.65 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.88 Total: 16.46 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 7.36 Total: 13.24 kcal Atomic # 7 Polarization: -96.32 SS G_CDS: -4.40 Total: -100.72 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -2.29 Total: -38.27 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -67.24 3.58 -63.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707125636.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.950 kcal (2) G-P(sol) polarization free energy of solvation -67.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds