Wall clock time and date at job start Wed Apr 1 2020 00:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99712 * 2 1 4 4 C 1.52998 * 109.47409 * 185.08723 * 3 2 1 5 5 C 1.50705 * 109.54042 * 292.67968 * 4 3 2 6 6 O 1.21287 * 119.99468 * 238.43656 * 5 4 3 7 7 N 1.34773 * 120.00248 * 58.44373 * 5 4 3 8 8 C 1.48139 * 127.83963 * 184.48370 * 7 5 4 9 9 C 1.54388 * 104.61805 * 219.58169 * 8 7 5 10 10 H 1.09002 * 110.43074 * 217.21338 * 9 8 7 11 11 C 1.52999 * 110.34510 * 95.00178 * 9 8 7 12 12 C 1.54281 * 104.95860 * 336.12751 * 9 8 7 13 13 H 1.09007 * 110.34153 * 118.87113 * 12 9 8 14 14 C 1.52999 * 110.34738 * 241.13036 * 12 9 8 15 15 N 1.46500 * 109.47452 * 185.00511 * 14 12 9 16 16 C 1.36937 * 120.00038 * 180.02562 * 15 14 12 17 17 H 1.08001 * 120.00166 * 359.97438 * 16 15 14 18 18 C 1.38810 * 119.99868 * 179.97438 * 16 15 14 19 19 N 1.31617 * 120.00039 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99989 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47345 * 89.99990 * 20 18 16 22 22 H 1.48500 * 109.46989 * 210.00115 * 20 18 16 23 23 H 1.48502 * 109.47365 * 330.00008 * 20 18 16 24 24 C 1.48148 * 127.83576 * 4.47427 * 7 5 4 25 25 C 1.53176 * 109.61585 * 52.89673 * 4 3 2 26 26 C 1.53094 * 109.16569 * 176.89523 * 25 4 3 27 27 O 1.42898 * 109.41355 * 302.39067 * 26 25 4 28 28 C 1.42908 * 114.09792 * 61.15971 * 27 26 25 29 29 C 1.53099 * 109.41223 * 298.84009 * 28 27 26 30 30 H 1.09001 * 109.46854 * 184.98499 * 1 2 3 31 31 H 1.09006 * 109.47160 * 304.97935 * 1 2 3 32 32 H 1.08997 * 109.47431 * 64.98335 * 1 2 3 33 33 H 1.09004 * 109.47623 * 65.08362 * 3 2 1 34 34 H 1.09002 * 109.47422 * 305.09008 * 3 2 1 35 35 H 1.09002 * 110.40885 * 100.79309 * 8 7 5 36 36 H 1.09009 * 110.40812 * 338.36594 * 8 7 5 37 37 H 1.08999 * 109.47144 * 299.48180 * 11 9 8 38 38 H 1.08997 * 109.47127 * 179.47842 * 11 9 8 39 39 H 1.09008 * 109.46913 * 59.47934 * 11 9 8 40 40 H 1.09002 * 109.46975 * 305.00477 * 14 12 9 41 41 H 1.08996 * 109.47015 * 65.00268 * 14 12 9 42 42 H 0.96999 * 119.99834 * 359.97438 * 15 14 12 43 43 H 0.96998 * 120.00240 * 180.02562 * 19 18 16 44 44 H 1.09001 * 110.40906 * 21.63595 * 24 7 5 45 45 H 1.09004 * 110.50845 * 259.25172 * 24 7 5 46 46 H 1.08996 * 109.52477 * 296.80182 * 25 4 3 47 47 H 1.09002 * 109.52447 * 56.98902 * 25 4 3 48 48 H 1.08999 * 109.47743 * 182.41274 * 26 25 4 49 49 H 1.08992 * 109.48033 * 62.37815 * 26 25 4 50 50 H 1.09003 * 109.48257 * 178.86137 * 28 27 26 51 51 H 1.08994 * 109.48700 * 58.82738 * 28 27 26 52 52 H 1.08995 * 109.52075 * 297.70211 * 29 28 27 53 53 H 1.09003 * 109.57081 * 177.54683 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5302 1.1871 -0.1279 5 6 4.0933 0.5553 1.1190 6 8 4.9206 1.1481 1.7786 7 7 3.6776 -0.6685 1.5011 8 6 4.0415 -1.4088 2.7316 9 6 4.2063 -2.8731 2.2711 10 1 3.8326 -3.5562 3.0339 11 6 5.6751 -3.1721 1.9642 12 6 3.3567 -2.9851 0.9882 13 1 3.9858 -3.2531 0.1393 14 6 2.2448 -4.0193 1.1751 15 7 1.5259 -4.1974 -0.0890 16 6 0.4812 -5.0795 -0.1641 17 1 0.1874 -5.6442 0.7083 18 6 -0.2003 -5.2478 -1.3617 19 7 -1.2041 -6.0960 -1.4341 20 14 0.3074 -4.2704 -2.8705 21 1 1.3299 -5.0315 -3.6323 22 1 -0.8797 -4.0374 -3.7318 23 1 0.8754 -2.9654 -2.4470 24 6 2.7530 -1.5786 0.7858 25 6 3.8782 0.3216 -1.3428 26 6 5.3996 0.2738 -1.5067 27 8 5.9043 1.6033 -1.6461 28 6 5.6500 2.4451 -0.5196 29 6 4.1387 2.5802 -0.3161 30 1 -0.3633 -1.0238 0.0893 31 1 -0.3634 0.5892 0.8421 32 1 -0.3634 0.4346 -0.9312 33 1 1.7624 1.8136 0.9320 34 1 1.6183 1.8777 -0.8409 35 1 3.2452 -1.3304 3.4718 36 1 4.9791 -1.0307 3.1394 37 1 6.0204 -2.5154 1.1658 38 1 5.7764 -4.2108 1.6498 39 1 6.2748 -3.0031 2.8587 40 1 2.6807 -4.9700 1.4822 41 1 1.5516 -3.6729 1.9416 42 1 1.7895 -3.6899 -0.8725 43 1 -1.6800 -6.2139 -2.2710 44 1 2.7185 -1.3288 -0.2747 45 1 1.7546 -1.5274 1.2203 46 1 3.4961 -0.6880 -1.1923 47 1 3.4288 0.7523 -2.2377 48 1 5.6514 -0.3056 -2.3949 49 1 5.8451 -0.1941 -0.6289 50 1 6.0824 3.4299 -0.6967 51 1 6.0989 2.0059 0.3712 52 1 3.6946 3.0565 -1.1902 53 1 3.9420 3.1862 0.5683 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716984890.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:12 Heat of formation + Delta-G solvation = -110.261582 kcal Electronic energy + Delta-G solvation = -33713.991654 eV Core-core repulsion = 29586.248094 eV Total energy + Delta-G solvation = -4127.743560 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.27272 -40.07289 -38.84425 -38.63322 -36.47735 -35.27874 -34.00608 -33.27553 -32.06159 -30.85886 -29.27990 -27.73414 -27.41455 -26.69990 -24.79866 -24.67232 -24.12112 -22.95001 -22.14967 -20.92365 -19.84059 -19.44015 -17.97200 -17.64100 -17.48875 -17.10696 -16.93716 -16.76064 -16.44540 -16.25089 -15.92843 -15.87331 -15.38129 -15.09605 -14.84348 -14.69794 -14.51987 -14.36513 -14.11309 -13.83617 -13.63258 -13.46352 -13.34696 -13.25086 -13.07745 -12.87595 -12.78435 -12.71095 -12.59327 -12.26821 -12.14664 -12.01411 -11.81614 -11.73646 -11.59361 -11.56597 -11.41318 -11.15763 -10.95080 -10.70581 -10.53989 -10.35935 -9.60180 -9.21953 -7.96428 -5.28981 1.42772 1.45294 1.51520 1.53309 1.97533 2.54080 2.68698 2.90134 3.28409 3.36315 3.47922 3.51853 3.61934 3.65870 3.91452 3.92358 4.03866 4.06354 4.18059 4.28076 4.33027 4.36797 4.40341 4.44439 4.50803 4.56136 4.56967 4.61341 4.62533 4.68675 4.71687 4.75420 4.79130 4.86086 4.89997 4.95289 4.99164 5.01983 5.06353 5.08464 5.11910 5.25520 5.28568 5.29585 5.44133 5.55665 5.82829 6.11675 6.18573 6.26918 6.58970 7.10745 7.15019 7.91031 8.10949 9.25263 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011969 B = 0.004535 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.745744 B = 6173.202397 C = 7036.817018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.382 6.382 3 C 0.065 3.935 4 C -0.071 4.071 5 C 0.542 3.458 6 O -0.575 6.575 7 N -0.607 5.607 8 C 0.107 3.893 9 C -0.092 4.092 10 H 0.098 0.902 11 C -0.135 4.135 12 C -0.109 4.109 13 H 0.078 0.922 14 C 0.170 3.830 15 N -0.753 5.753 16 C -0.227 4.227 17 H 0.055 0.945 18 C -0.061 4.061 19 N -0.986 5.986 20 Si 0.946 3.054 21 H -0.285 1.285 22 H -0.300 1.300 23 H -0.239 1.239 24 C 0.124 3.876 25 C -0.151 4.151 26 C 0.060 3.940 27 O -0.395 6.395 28 C 0.050 3.950 29 C -0.122 4.122 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.042 0.958 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.026 0.974 41 H 0.028 0.972 42 H 0.366 0.634 43 H 0.256 0.744 44 H 0.105 0.895 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.094 0.906 48 H 0.110 0.890 49 H 0.033 0.967 50 H 0.110 0.890 51 H 0.055 0.945 52 H 0.097 0.903 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.907 18.524 3.687 22.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.302 6.302 3 C -0.012 4.012 4 C -0.074 4.074 5 C 0.332 3.668 6 O -0.456 6.456 7 N -0.338 5.338 8 C -0.016 4.016 9 C -0.112 4.112 10 H 0.116 0.884 11 C -0.192 4.192 12 C -0.128 4.128 13 H 0.096 0.904 14 C 0.044 3.956 15 N -0.398 5.398 16 C -0.358 4.358 17 H 0.073 0.927 18 C -0.252 4.252 19 N -0.637 5.637 20 Si 0.774 3.226 21 H -0.211 1.211 22 H -0.227 1.227 23 H -0.163 1.163 24 C 0.003 3.997 25 C -0.188 4.188 26 C -0.017 4.017 27 O -0.314 6.314 28 C -0.027 4.027 29 C -0.160 4.160 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.044 0.956 41 H 0.046 0.954 42 H 0.199 0.801 43 H 0.065 0.935 44 H 0.123 0.877 45 H 0.097 0.903 46 H 0.110 0.890 47 H 0.113 0.887 48 H 0.128 0.872 49 H 0.052 0.948 50 H 0.128 0.872 51 H 0.074 0.926 52 H 0.115 0.885 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.442 18.694 3.956 22.802 hybrid contribution -0.724 -0.003 -0.595 0.937 sum 11.718 18.691 3.360 22.315 Atomic orbital electron populations 1.22797 0.80910 1.02978 1.00859 1.88542 1.20284 1.25993 1.95350 1.22539 0.90299 0.86454 1.01898 1.20924 0.95632 0.97733 0.93151 1.20271 0.80648 0.79660 0.86254 1.90612 1.34637 1.62963 1.57436 1.48927 1.46038 1.15792 1.23039 1.22476 1.01193 0.90701 0.87182 1.22053 0.96311 0.95808 0.97002 0.88365 1.21772 0.94283 1.01552 1.01594 1.22487 0.96467 0.95072 0.98803 0.90390 1.20782 0.91609 0.95712 0.87512 1.42651 1.37786 1.49626 1.09757 1.19004 1.06124 1.14350 0.96307 0.92673 1.25426 0.98230 1.00778 1.00793 1.69885 1.25600 1.41392 1.26868 0.85530 0.76978 0.80365 0.79771 1.21132 1.22730 1.16251 1.22897 0.92022 0.85577 0.99240 1.22519 0.97272 1.01663 0.97315 1.22618 0.92694 0.84233 1.02131 1.87884 1.79125 1.22670 1.41685 1.22856 0.95030 0.95657 0.89117 1.21970 0.96624 0.93503 1.03891 0.90548 0.92918 0.92950 0.92697 0.90111 0.90558 0.90454 0.93862 0.91929 0.91483 0.95557 0.95449 0.80060 0.93545 0.87723 0.90332 0.88994 0.88718 0.87203 0.94819 0.87203 0.92648 0.88451 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.72 113.37 1.22 1.65 16 2 O -0.38 -8.77 4.24 -148.98 -0.63 -9.40 16 3 C 0.06 1.24 4.82 71.98 0.35 1.58 16 4 C -0.07 -1.51 0.50 -52.81 -0.03 -1.53 16 5 C 0.54 14.14 5.30 87.66 0.46 14.61 16 6 O -0.58 -17.79 14.05 -3.05 -0.04 -17.84 16 7 N -0.61 -15.16 3.28 -807.94 -2.65 -17.81 16 8 C 0.11 2.43 6.61 86.54 0.57 3.01 16 9 C -0.09 -2.01 3.31 -9.89 -0.03 -2.04 16 10 H 0.10 2.00 7.71 -2.39 -0.02 1.98 16 11 C -0.13 -2.70 8.90 71.98 0.64 -2.06 16 12 C -0.11 -2.89 2.75 -9.89 -0.03 -2.92 16 13 H 0.08 2.12 7.71 -2.38 -0.02 2.10 16 14 C 0.17 5.83 5.38 86.38 0.46 6.30 16 15 N -0.75 -32.37 5.28 -343.46 -1.81 -34.19 16 16 C -0.23 -12.32 10.47 84.03 0.88 -11.44 16 17 H 0.06 3.32 8.06 -2.91 -0.02 3.29 16 18 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 19 N -0.99 -61.73 13.97 21.65 0.30 -61.43 16 20 Si 0.95 43.20 27.73 68.60 1.90 45.10 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 23 H -0.24 -9.42 6.52 99.48 0.65 -8.77 16 24 C 0.12 3.23 3.72 86.53 0.32 3.55 16 25 C -0.15 -3.17 4.55 30.68 0.14 -3.03 16 26 C 0.06 1.33 6.62 72.01 0.48 1.81 16 27 O -0.39 -9.41 10.77 -148.98 -1.60 -11.01 16 28 C 0.05 1.06 6.55 72.02 0.47 1.53 16 29 C -0.12 -2.27 4.56 30.69 0.14 -2.13 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.05 1.03 8.13 -2.38 -0.02 1.01 16 34 H 0.08 1.23 8.13 -2.39 -0.02 1.21 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.08 1.81 7.57 -2.38 -0.02 1.79 16 37 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.03 0.93 8.14 -2.39 -0.02 0.92 16 41 H 0.03 0.96 7.98 -2.39 -0.02 0.94 16 42 H 0.37 14.98 5.47 -92.71 -0.51 14.48 16 43 H 0.26 15.33 8.31 -92.71 -0.77 14.55 16 44 H 0.11 2.81 3.01 -2.39 -0.01 2.80 16 45 H 0.08 2.26 6.28 -2.38 -0.01 2.24 16 46 H 0.09 2.13 4.45 -2.39 -0.01 2.12 16 47 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 48 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 49 H 0.03 0.84 7.38 -2.39 -0.02 0.82 16 50 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 51 H 0.06 1.45 5.75 -2.39 -0.01 1.44 16 52 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 53 H 0.08 1.52 8.05 -2.39 -0.02 1.50 16 Total: -1.00 -68.20 391.99 2.31 -65.89 By element: Atomic # 1 Polarization: 34.46 SS G_CDS: 0.33 Total: 34.79 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 6.51 Total: 5.90 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -4.16 Total: -113.43 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -2.28 Total: -38.24 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.90 Total: 45.10 kcal Total: -68.20 2.31 -65.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716984890.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.374 kcal (2) G-P(sol) polarization free energy of solvation -68.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds