Wall clock time and date at job start Wed Apr 1 2020 00:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99769 * 2 1 4 4 C 1.53001 * 109.47090 * 179.97438 * 3 2 1 5 5 C 1.50705 * 109.61536 * 54.22922 * 4 3 2 6 6 O 1.21274 * 120.00047 * 231.75656 * 5 4 3 7 7 N 1.34774 * 119.99727 * 51.75664 * 5 4 3 8 8 C 1.47488 * 127.03560 * 4.13851 * 7 5 4 9 9 C 1.54008 * 107.08162 * 154.52042 * 8 7 5 10 10 H 1.09012 * 110.32644 * 242.41747 * 9 8 7 11 11 C 1.53000 * 110.32719 * 120.20130 * 9 8 7 12 12 C 1.54614 * 105.04434 * 1.30530 * 9 8 7 13 13 H 1.09001 * 110.74470 * 263.51098 * 12 9 8 14 14 C 1.53002 * 110.73727 * 140.18957 * 12 9 8 15 15 N 1.46499 * 109.47154 * 175.00268 * 14 12 9 16 16 C 1.36942 * 120.00120 * 179.97438 * 15 14 12 17 17 H 1.08003 * 119.99652 * 359.97438 * 16 15 14 18 18 C 1.38810 * 120.00202 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99941 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99945 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47367 * 59.99938 * 20 18 16 22 22 H 1.48508 * 109.46952 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47162 * 299.99729 * 20 18 16 24 24 C 1.48114 * 127.03337 * 183.82968 * 7 5 4 25 25 C 1.53180 * 109.54313 * 174.45142 * 4 3 2 26 26 C 1.53085 * 109.16150 * 176.84844 * 25 4 3 27 27 O 1.42904 * 109.41588 * 302.39089 * 26 25 4 28 28 C 1.42899 * 114.09633 * 61.15900 * 27 26 25 29 29 C 1.53092 * 109.41672 * 298.84207 * 28 27 26 30 30 H 1.08997 * 109.47179 * 60.00168 * 1 2 3 31 31 H 1.09000 * 109.46990 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46951 * 299.99947 * 1 2 3 33 33 H 1.09000 * 109.47224 * 59.99817 * 3 2 1 34 34 H 1.09003 * 109.46932 * 300.00175 * 3 2 1 35 35 H 1.08995 * 109.91673 * 273.88223 * 8 7 5 36 36 H 1.08996 * 109.91028 * 34.97279 * 8 7 5 37 37 H 1.08997 * 109.47208 * 61.45491 * 11 9 8 38 38 H 1.09004 * 109.46838 * 181.45055 * 11 9 8 39 39 H 1.08997 * 109.47262 * 301.45132 * 11 9 8 40 40 H 1.09005 * 109.46841 * 294.99962 * 14 12 9 41 41 H 1.09000 * 109.47690 * 54.99818 * 14 12 9 42 42 H 0.96999 * 120.00005 * 359.97438 * 15 14 12 43 43 H 0.96997 * 119.99796 * 180.02562 * 19 18 16 44 44 H 1.09004 * 110.66249 * 337.76685 * 24 7 5 45 45 H 1.09001 * 110.66715 * 100.88371 * 24 7 5 46 46 H 1.09006 * 109.51924 * 56.94149 * 25 4 3 47 47 H 1.08997 * 109.57203 * 296.78993 * 25 4 3 48 48 H 1.09001 * 109.47741 * 182.41032 * 26 25 4 49 49 H 1.09000 * 109.49249 * 62.38116 * 26 25 4 50 50 H 1.08994 * 109.48226 * 58.82860 * 28 27 26 51 51 H 1.09001 * 109.48066 * 178.85813 * 28 27 26 52 52 H 1.09003 * 109.52133 * 297.70361 * 29 28 27 53 53 H 1.08996 * 109.51924 * 177.51723 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 3.9748 0.3174 -1.1508 6 8 4.7190 -0.6198 -0.9545 7 7 3.5406 0.5833 -2.3987 8 6 2.7078 1.7233 -2.8254 9 6 3.0046 1.9672 -4.3168 10 1 3.4361 2.9580 -4.4599 11 6 1.7265 1.8182 -5.1444 12 6 4.0272 0.8749 -4.7063 13 1 5.0444 1.2636 -4.6586 14 6 3.7227 0.3196 -6.0991 15 7 4.7732 -0.6241 -6.4890 16 6 4.7129 -1.2520 -7.7045 17 1 3.8906 -1.0518 -8.3754 18 6 5.7080 -2.1466 -8.0737 19 7 6.7098 -2.3910 -7.2558 20 14 5.6260 -3.0025 -9.7320 21 1 5.6374 -1.9863 -10.8147 22 1 6.7991 -3.9004 -9.8841 23 1 4.3768 -3.8010 -9.8157 24 6 3.8073 -0.2061 -3.6232 25 6 4.1597 2.5766 -0.1389 26 6 5.6835 2.4542 -0.0582 27 8 6.0457 1.8369 1.1786 28 6 5.5294 0.5147 1.3439 29 6 3.9993 0.5591 1.3196 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6885 1.8465 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 1.6530 1.4834 -2.6912 36 1 2.9639 2.6086 -2.2434 37 1 0.9968 2.5613 -4.8230 38 1 1.9571 1.9680 -6.1992 39 1 1.3150 0.8191 -5.0008 40 1 2.7610 -0.1934 -6.0834 41 1 3.6856 1.1390 -6.8169 42 1 5.5115 -0.8042 -5.8862 43 1 7.4054 -3.0158 -7.5139 44 1 4.7033 -0.8147 -3.5009 45 1 2.9490 -0.8295 -3.8736 46 1 3.8026 3.2184 0.6666 47 1 3.8792 3.0079 -1.0998 48 1 6.1313 3.4465 -0.1141 49 1 6.0440 1.8456 -0.8875 50 1 5.8876 -0.1194 0.5330 51 1 5.8662 0.1096 2.2982 52 1 3.6390 1.1602 2.1545 53 1 3.6043 -0.4535 1.4013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716984892.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:25 Heat of formation + Delta-G solvation = -129.303923 kcal Electronic energy + Delta-G solvation = -32569.555320 eV Core-core repulsion = 28440.986022 eV Total energy + Delta-G solvation = -4128.569297 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.26802 -40.22361 -38.73261 -38.66134 -36.49214 -35.39346 -34.19275 -32.86198 -32.12427 -30.60313 -29.17804 -27.81909 -27.16185 -26.68120 -25.30239 -24.70073 -24.08922 -23.25270 -22.30557 -20.34800 -20.05363 -18.94262 -17.96494 -17.64540 -17.29062 -17.10404 -17.01521 -16.66783 -16.59893 -16.38661 -15.92860 -15.79741 -15.40151 -15.21127 -15.16492 -14.76534 -14.57575 -14.39080 -13.86196 -13.77009 -13.56795 -13.46194 -13.25909 -13.17654 -12.98325 -12.92333 -12.82724 -12.70729 -12.65925 -12.35530 -12.26609 -12.16424 -11.86139 -11.72557 -11.64016 -11.57615 -11.47634 -11.30402 -10.90455 -10.79864 -10.50969 -10.32473 -9.71128 -9.00210 -7.95121 -5.24800 1.45616 1.49394 1.55551 1.57799 1.89178 2.55484 2.68846 2.90969 3.23457 3.37927 3.46232 3.55053 3.62942 3.76465 3.84480 3.91038 3.98424 4.07019 4.19149 4.26074 4.29643 4.31879 4.37246 4.41942 4.51921 4.53096 4.57424 4.57791 4.61682 4.62230 4.72614 4.74357 4.80698 4.83331 4.85915 4.88221 4.89227 4.96801 5.01850 5.05523 5.13720 5.19387 5.23925 5.27199 5.38222 5.49255 5.54447 6.18283 6.20931 6.26163 6.57135 7.12955 7.31788 8.08801 8.30111 9.28493 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013642 B = 0.003089 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.991685 B = 9062.413398 C = 9796.541134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.417 6.417 3 C 0.064 3.936 4 C -0.070 4.070 5 C 0.541 3.459 6 O -0.585 6.585 7 N -0.614 5.614 8 C 0.095 3.905 9 C -0.088 4.088 10 H 0.108 0.892 11 C -0.143 4.143 12 C -0.095 4.095 13 H 0.065 0.935 14 C 0.167 3.833 15 N -0.750 5.750 16 C -0.245 4.245 17 H 0.080 0.920 18 C -0.078 4.078 19 N -0.973 5.973 20 Si 0.975 3.025 21 H -0.274 1.274 22 H -0.298 1.298 23 H -0.277 1.277 24 C 0.122 3.878 25 C -0.140 4.140 26 C 0.053 3.947 27 O -0.393 6.393 28 C 0.043 3.957 29 C -0.118 4.118 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.058 0.942 39 H 0.046 0.954 40 H 0.029 0.971 41 H 0.033 0.967 42 H 0.369 0.631 43 H 0.250 0.750 44 H 0.039 0.961 45 H 0.063 0.937 46 H 0.119 0.881 47 H 0.105 0.895 48 H 0.124 0.876 49 H 0.019 0.981 50 H 0.048 0.952 51 H 0.102 0.898 52 H 0.102 0.898 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.838 17.642 18.394 30.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.337 6.337 3 C -0.012 4.012 4 C -0.074 4.074 5 C 0.332 3.668 6 O -0.465 6.465 7 N -0.346 5.346 8 C -0.026 4.026 9 C -0.107 4.107 10 H 0.126 0.874 11 C -0.201 4.201 12 C -0.115 4.115 13 H 0.083 0.917 14 C 0.041 3.959 15 N -0.392 5.392 16 C -0.376 4.376 17 H 0.098 0.902 18 C -0.270 4.270 19 N -0.624 5.624 20 Si 0.804 3.196 21 H -0.200 1.200 22 H -0.225 1.225 23 H -0.203 1.203 24 C -0.001 4.001 25 C -0.177 4.177 26 C -0.023 4.023 27 O -0.312 6.312 28 C -0.033 4.033 29 C -0.156 4.156 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.126 0.874 37 H 0.105 0.895 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.051 0.949 42 H 0.200 0.800 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.137 0.863 47 H 0.123 0.877 48 H 0.142 0.858 49 H 0.037 0.963 50 H 0.066 0.934 51 H 0.121 0.879 52 H 0.120 0.880 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.306 17.024 18.569 29.477 hybrid contribution 0.580 -1.523 -1.118 1.976 sum -14.726 15.501 17.451 27.599 Atomic orbital electron populations 1.22884 0.79185 1.03333 1.01357 1.87941 1.21665 1.28419 1.95665 1.22865 0.89295 0.85435 1.03612 1.20961 0.96811 0.96532 0.93047 1.20641 0.78670 0.84576 0.82922 1.90628 1.38330 1.33564 1.84012 1.48802 1.51921 1.27562 1.06301 1.22835 0.95402 0.89063 0.95305 1.22083 0.95981 0.98962 0.93668 0.87404 1.21895 0.95989 1.02167 1.00009 1.22274 0.99941 0.95709 0.93547 0.91652 1.20866 0.90982 0.91349 0.92691 1.42689 1.27130 1.50812 1.18615 1.19634 1.05858 1.17574 0.94584 0.90203 1.25622 0.97393 1.01793 1.02221 1.69844 1.13985 1.40184 1.38374 0.85189 0.76630 0.78149 0.79669 1.19985 1.22464 1.20299 1.22152 0.99786 0.94369 0.83836 1.22411 0.95544 0.93510 1.06271 1.22706 0.94984 0.99013 0.85645 1.87861 1.75050 1.29803 1.38525 1.22901 0.93731 0.83987 1.02705 1.21929 0.96118 1.01948 0.95604 0.92806 0.89989 0.92094 0.89342 0.90099 0.89563 0.87389 0.89536 0.92262 0.93440 0.95296 0.94932 0.79969 0.94150 0.94218 0.91832 0.86260 0.87743 0.85812 0.96281 0.93404 0.87949 0.87992 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.42 -8.71 9.81 -148.98 -1.46 -10.17 16 3 C 0.06 0.94 4.43 71.98 0.32 1.26 16 4 C -0.07 -1.43 0.34 -52.81 -0.02 -1.44 16 5 C 0.54 16.54 4.88 87.66 0.43 16.97 16 6 O -0.59 -24.05 13.81 -3.01 -0.04 -24.09 16 7 N -0.61 -17.07 3.26 -810.09 -2.64 -19.72 16 8 C 0.10 1.64 4.63 86.53 0.40 2.04 16 9 C -0.09 -1.70 3.53 -9.90 -0.03 -1.74 16 10 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 11 C -0.14 -2.50 7.79 71.98 0.56 -1.94 16 12 C -0.09 -2.97 2.99 -9.70 -0.03 -3.00 16 13 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 14 C 0.17 6.43 4.44 86.38 0.38 6.82 16 15 N -0.75 -39.05 5.52 -343.44 -1.90 -40.95 16 16 C -0.24 -13.90 9.99 84.03 0.84 -13.06 16 17 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 18 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 19 N -0.97 -62.15 13.06 21.65 0.28 -61.87 16 20 Si 0.98 47.11 29.55 68.60 2.03 49.14 16 21 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 22 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 24 C 0.12 4.29 6.45 86.61 0.56 4.85 16 25 C -0.14 -2.01 4.78 30.68 0.15 -1.87 16 26 C 0.05 1.10 6.61 72.01 0.48 1.58 16 27 O -0.39 -9.91 10.77 -148.98 -1.60 -11.51 16 28 C 0.04 1.12 6.56 72.01 0.47 1.60 16 29 C -0.12 -2.59 4.46 30.68 0.14 -2.45 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.53 16 33 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 0.87 4.70 -2.39 -0.01 0.86 16 35 H 0.09 1.23 6.72 -2.39 -0.02 1.21 16 36 H 0.11 1.17 4.45 -2.39 -0.01 1.16 16 37 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.06 1.17 6.76 -2.38 -0.02 1.15 16 39 H 0.05 0.96 7.51 -2.39 -0.02 0.94 16 40 H 0.03 1.11 6.80 -2.38 -0.02 1.09 16 41 H 0.03 1.22 7.37 -2.39 -0.02 1.20 16 42 H 0.37 21.09 7.67 -92.71 -0.71 20.38 16 43 H 0.25 15.54 8.31 -92.71 -0.77 14.77 16 44 H 0.04 1.76 7.82 -2.38 -0.02 1.74 16 45 H 0.06 2.31 7.93 -2.39 -0.02 2.29 16 46 H 0.12 1.03 8.14 -2.38 -0.02 1.02 16 47 H 0.10 1.10 5.02 -2.39 -0.01 1.08 16 48 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.02 0.52 7.38 -2.39 -0.02 0.50 16 50 H 0.05 1.64 5.52 -2.39 -0.01 1.62 16 51 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 52 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 53 H 0.06 1.71 7.93 -2.39 -0.02 1.69 16 Total: -1.00 -80.78 394.76 1.22 -79.56 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 0.20 Total: 32.53 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 6.36 Total: 7.07 kcal Atomic # 7 Polarization: -118.27 SS G_CDS: -4.26 Total: -122.53 kcal Atomic # 8 Polarization: -42.67 SS G_CDS: -3.11 Total: -45.77 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -80.78 1.22 -79.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716984892.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.743 kcal (2) G-P(sol) polarization free energy of solvation -80.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds